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Rasmussen A, Vidoz ML, Sparks EE. Stem-borne roots as a framework to study trans-organogenesis and uncover fundamental insights in developmental biology. CURRENT OPINION IN PLANT BIOLOGY 2024; 81:102604. [PMID: 39033716 DOI: 10.1016/j.pbi.2024.102604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 06/19/2024] [Accepted: 07/01/2024] [Indexed: 07/23/2024]
Abstract
Plants have a remarkable ability to generate organs with a different identity to the parent organ, called 'trans-organogenesis'. An example of trans-organogenesis is the formation of roots from stems (a type of adventitious root), which is the first type of root that arose during plant evolution. Despite being ancestral, stem-borne roots are often contextualised through lateral root research, implying that lateral roots precede adventitious roots. In this review we challenge that idea, highlight what is known about stem-borne root development across the plant kingdom, the remarkable diversity in form and function, and the many remaining evolutionary questions. Exploring stem-borne root evolutionary development can enhance our understanding of developmental decision making and the processes by which cells acquire their fates.
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Affiliation(s)
- Amanda Rasmussen
- School of Biosciences, Division of Agriculture and Environmental Sciences, University of Nottingham, Sutton Bonington, LE12 5RD, UK
| | - Maria Laura Vidoz
- Facultad de Ciencias Agrarias, Universidad Nacional del Nordeste (UNNE), Corrientes, Argentina; Instituto de Botánica del Nordeste (IBONE), UNNE-CONICET, Corrientes, Argentina
| | - Erin E Sparks
- Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19713, USA.
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Yadav AS, Hong L, Klees PM, Kiss A, Petit M, He X, Barrios IM, Heeney M, Galang AMD, Smith RS, Boudaoud A, Roeder AH. Growth directions and stiffness across cell layers determine whether tissues stay smooth or buckle. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.07.22.549953. [PMID: 37546730 PMCID: PMC10401922 DOI: 10.1101/2023.07.22.549953] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Abstract
From smooth to buckled, nature exhibits organs of various shapes and forms. How cellular growth patterns produce smooth organ shapes such as leaves and sepals remains unclear. Here we show that unidirectional growth and comparable stiffness across both epidermal layers of Arabidopsis sepals are essential for smoothness. We identified a mutant with ectopic ASYMMETRIC LEAVES 2 (AS2) expression on the outer epidermis. Our analysis reveals that ectopic AS2 expression causes outer epidermal buckling at early stages of sepal development, due to conflicting growth directions and unequal epidermal stiffnesses. Aligning growth direction and increasing stiffness of the outer epidermis restores smoothness. Furthermore, buckling influences auxin efflux transporter protein PIN-FORMED 1 polarity to generate outgrowth in the later stages, suggesting that buckling is sufficient to initiate outgrowths. Our findings suggest that in addition to molecular cues influencing tissue mechanics, tissue mechanics can also modulate molecular signals, giving rise to well-defined shapes.
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Affiliation(s)
- Avilash S. Yadav
- Weill Institute for Cell and Molecular Biology and Section of Plant Biology, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853, USA
| | - Lilan Hong
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Patrick M. Klees
- Weill Institute for Cell and Molecular Biology and Section of Plant Biology, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853, USA
| | - Annamaria Kiss
- Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon1, CNRS, INRAE, INRIA, F-69342 Lyon, France
| | - Manuel Petit
- Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon1, CNRS, INRAE, INRIA, F-69342 Lyon, France
| | - Xi He
- Institute of Nuclear Agricultural Sciences, Key Laboratory of Nuclear Agricultural Sciences of Ministry of Agriculture and Zhejiang Province, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Iselle M. Barrios
- Weill Institute for Cell and Molecular Biology and Section of Plant Biology, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853, USA
| | - Michelle Heeney
- Weill Institute for Cell and Molecular Biology and Section of Plant Biology, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853, USA
| | - Anabella Maria D. Galang
- Weill Institute for Cell and Molecular Biology and Section of Plant Biology, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853, USA
| | | | - Arezki Boudaoud
- LadHyX, Ecole Polytechnique, CNRS, IP Paris, 91128 Palaiseau Cedex, France
| | - Adrienne H.K. Roeder
- Weill Institute for Cell and Molecular Biology and Section of Plant Biology, School of Integrative Plant Sciences, Cornell University, Ithaca, NY 14853, USA
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Amaral C, Poulter B, Lagomasino D, Fatoyinbo T, Taillie P, Lizcano G, Canty S, Silveira JAH, Teutli-Hernández C, Cifuentes-Jara M, Charles SP, Moreno CS, González-Trujillo JD, Roman-Cuesta RM. Drivers of mangrove vulnerability and resilience to tropical cyclones in the North Atlantic Basin. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 898:165413. [PMID: 37429480 DOI: 10.1016/j.scitotenv.2023.165413] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 07/05/2023] [Accepted: 07/07/2023] [Indexed: 07/12/2023]
Abstract
The North Atlantic Basin (NAB) has seen an increase in the frequency and intensity of tropical cyclones since the 1980s, with record-breaking seasons in 2017 and 2020. However, little is known about how coastal ecosystems, particularly mangroves in the Gulf of Mexico and the Caribbean, respond to these new "climate normals" at regional and subregional scales. Wind speed, rainfall, pre-cyclone forest height, and hydro-geomorphology are known to influence mangrove damage and recovery following cyclones in the NAB. However, previous studies have focused on local-scale responses and individual cyclonic events. Here, we analyze 25 years (1996-2020) of mangrove vulnerability (damage after a cyclone) and 24 years (1996-2019) of short-term resilience (recovery after damage) for the NAB and subregions, using multi-annual, remote sensing-derived databases. We used machine learning to characterize the influence of 22 potential variables on mangrove responses, including human development and long-term climate trends. Our results document variability in the rates and drivers of mangrove vulnerability and resilience, highlighting hotspots of cyclone impacts, mangrove damage, and loss of resilience. Cyclone characteristics mainly drove vulnerability at the regional level. In contrast, resilience was driven by site-specific conditions, including long-term climate trends, pre-cyclone forest structure, soil organic carbon stock, and coastal development (i.e., proximity to human infrastructure). Coastal development is associated with both vulnerability and resilience at the subregional level. Further, we highlight that loss of resilience occurs mostly in areas experiencing long-term drought across the NAB. The impacts of increasing cyclone activity on mangroves and their coastal protection service must be framed in the context of compound climate change effects and continued coastal development. Our work offers descriptive and spatial information to support the restoration and adaptive management of NAB mangroves, which need adequate health, structure, and density to protect coasts and serve as Nature-based Solutions against climate change and extreme weather events.
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Affiliation(s)
- Cibele Amaral
- Earth Lab, Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, Boulder, CO 80303, United States; Universidade Federal de Viçosa, Department of Forest Engineering, Viçosa, MG 36570-900, Brazil; NASA Goddard Space Flight Center, Biospheric Sciences Laboratory, Greenbelt, MD 20771, United States.
| | - Benjamin Poulter
- NASA Goddard Space Flight Center, Biospheric Sciences Laboratory, Greenbelt, MD 20771, United States
| | - David Lagomasino
- East Carolina University, Department of Coastal Studies, Greenville, NC 27858-4353, United States
| | - Temilola Fatoyinbo
- NASA Goddard Space Flight Center, Biospheric Sciences Laboratory, Greenbelt, MD 20771, United States
| | - Paul Taillie
- University of Florida, Department of Wildlife Ecology and Conservation, Gainesville, FL 32611, United States
| | - Gil Lizcano
- Climate Scale, Parc Barcelona Activa, 08402 Barcelona, Spain
| | - Steven Canty
- Smithsonian Environmental Research Center, 647 Contees Wharf Road, Edgewater, MD 21037, United States; Working Land and Seascapes, Smithsonian Institution, Washington, DC 20013, United States
| | | | | | - Miguel Cifuentes-Jara
- Conservation International, Arlington, VA 22202, United States; Centro Agronómico Tropical de Investigación y Enseñanza, 30501 Turrialba, Costa Rica
| | - Sean Patrick Charles
- East Carolina University, Department of Coastal Studies, Greenville, NC 27858-4353, United States
| | - Claudia Shantal Moreno
- Chair of Land Management, Technical University of Munich, Arcisstraße 21, D-80333 Munich, Germany
| | - Juan David González-Trujillo
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, CSIC, JoseGutierrez Abascal, 2, 28006 Madrid, Spain; Rui Nabeiro Biodiversity Chair, MED Institute, Universidade de Évora, Largo dos Colegiais, 7000 Évora, Portugal
| | - Rosa Maria Roman-Cuesta
- Wageningen University & Research, Laboratory of Geo-Information Science and Remote Sensing, 6708PB Wageningen, the Netherlands; Technical University of Munich, School of Life Sciences, Institute of Forest Management, 85354 Fresing, Germany
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Qian Z, Wu L, Tang L. Effects of Flooding and Endogenous Hormone on the Formation of Knee Roots in Taxodium ascendens. FRONTIERS IN PLANT SCIENCE 2022; 13:803619. [PMID: 35185981 PMCID: PMC8850469 DOI: 10.3389/fpls.2022.803619] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
Taxodium ascendens is a typical tree species with high flood tolerance, and it can generate knee roots in the wetlands. This study investigated the number and size of knee roots and the soil flooding conditions. Furthermore, we also measured physiology, biochemical responses, and the anatomical structure of knee roots and underground roots at different developmental stages. This study aimed to understand the adaptation mechanism of T. ascendens to flooding stress and the formation mechanism of the knee roots. The results showed that the formation of knee roots was significantly affected by the soil water table (P < 0.05). The middle water table was more conducive to the formation of knee roots. In the middle water table, the 1-aminocyclopropane-1-carboxylic acid (ACC) content and ACC synthase activity were significantly lower in the knee roots than in the underground roots. The knee roots at the young-aged stage showed the highest ACC oxidase activity among the development stages of the knee roots. The ethylene release rate was significantly higher in the knee roots than in the underground roots (P < 0.05). Indole-3-acetic acid (IAA) content first increased, then decreased with knee root development. The periderm cells at the apex of the knee roots were dead and had many intercellular spaces, which was beneficial for the growth of T. ascendens. In conclusion, the middle water table induced the ethylene and IAA production, which promoted the formation of knee roots, which improved roots ventilation and flooding tolerance of T. ascendens. The results obtained can provide information about mechanisms of knee roots formation and provide scientific evidence for the afforestation and management under wetland conditions.
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Bauer U, Poppinga S, Müller UK. Mechanical Ecology-Taking Biomechanics to the Field. Integr Comp Biol 2020; 60:820-828. [PMID: 32275745 DOI: 10.1093/icb/icaa018] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Synopsis Interdisciplinary research can have strong and surprising synergistic effects, leading to rapid knowledge gains. Equally important, it can help to reintegrate fragmented fields across increasingly isolated specialist sub-disciplines. However, the lack of a common identifier for research "in between fields" can make it difficult to find relevant research outputs and network effectively. We illustrate and address this issue for the emerging interdisciplinary hotspot of "mechanical ecology," which we define here as the intersection of quantitative biomechanics and field ecology at the organism level. We show that an integrative approach crucially advances our understanding in both disciplines by (1) putting biomechanical mechanisms into a biologically meaningful ecological context and (2) addressing the largely neglected influence of mechanical factors in organismal and behavioral ecology. We call for the foundation of knowledge exchange platforms such as meeting symposia, special issues in journals, and focus groups dedicated to mechanical ecology.
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Affiliation(s)
- Ulrike Bauer
- School of Biological Sciences, University of Bristol, Bristol, UK
| | - Simon Poppinga
- Plant Biomechanics Group, Botanic Garden, University of Freiburg, Freiburg im Breisgau, Germany.,Freiburg Materials Research Center (FMF), University of Freiburg, Freiburg im Breisgau, Germany
| | - Ulrike K Müller
- Department of Biology, California State University Fresno, Fresno, CA, USA
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Stubbs CJ, Cook DD, Niklas KJ. A general review of the biomechanics of root anchorage. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3439-3451. [PMID: 30698795 DOI: 10.1093/jxb/ery451] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 12/11/2018] [Indexed: 05/08/2023]
Abstract
With few exceptions, terrestrial plants are anchored to substrates by roots that experience bending and twisting forces resulting from gravity- and wind-induced forces. Mechanical failure occurs when these forces exceed the flexural or torsional tolerance limits of stems or roots, or when roots are dislodged from their substrate. The emphasis of this review is on the general principles of anchorage, how the mechanical failure of root anchorage can be averted, and recommendations for future research.
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Affiliation(s)
| | - Douglas D Cook
- Department of Mechanical Engineering, Brigham Young University, Provo, UT, USA
| | - Karl J Niklas
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
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Shtein I, Bar-On B, Popper ZA. Plant and algal structure: from cell walls to biomechanical function. PHYSIOLOGIA PLANTARUM 2018; 164:56-66. [PMID: 29572853 DOI: 10.1111/ppl.12727] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 03/04/2018] [Accepted: 03/16/2018] [Indexed: 06/08/2023]
Abstract
Plant and algal cell walls are complex biomaterials composed of stiff cellulose microfibrils embedded in a soft matrix of polysaccharides, proteins and phenolic compounds. Cell wall composition differs between taxonomic groups and different tissue types (or even at the sub-cellular level) within a plant enabling specific biomechanical properties important for cell/tissue function. Moreover, cell wall composition changes may be induced in response to environmental conditions. Plant structure, habit, morphology and internal anatomy are also dependent on the taxonomic group as well as abiotic and biotic factors. This review aims to examine the complex and incompletely understood interactions of cell wall composition, plant form and biomechanical function.
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Affiliation(s)
- Ilana Shtein
- Department of Mechanical Engineering, Ben Gurion University of the Negev, Beer Sheva, 84105, Israel
- Botany and Plant Science, Ryan Institute for Environmental, Marine and Energy Research, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
- Eastern Region Research and Development Center, Ariel, Israel
| | - Benny Bar-On
- Department of Mechanical Engineering, Ben Gurion University of the Negev, Beer Sheva, 84105, Israel
| | - Zoë A Popper
- Botany and Plant Science, Ryan Institute for Environmental, Marine and Energy Research, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
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