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For: Newaz K, Wright G, Piland J, Li J, Clark PL, Emrich SJ, Milenković T. Network analysis of synonymous codon usage. Bioinformatics 2020;36:4876-4884. [PMID: 32609328 DOI: 10.1093/bioinformatics/btaa603] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 05/05/2020] [Accepted: 06/22/2020] [Indexed: 12/25/2022]  Open
Number Cited by Other Article(s)
1
Newaz K, Schaefers C, Weisel K, Baumbach J, Frishman D. Prognostic importance of splicing-triggered aberrations of protein complex interfaces in cancer. NAR Genom Bioinform 2024;6:lqae133. [PMID: 39328266 PMCID: PMC11426328 DOI: 10.1093/nargab/lqae133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Revised: 08/30/2024] [Accepted: 09/13/2024] [Indexed: 09/28/2024]  Open
2
Xiao Y, Huang H, Chen Y, Zheng S, Chen J, Zou Z, Mehmood N, Ullah I, Liao X, Wang J. Insight on genetic features prevalent in five Ipomoea species using comparative codon pattern analysis reveals differences in major codons and reduced GC content at the 5’ end of CDS. Biochem Biophys Res Commun 2023;657:92-99. [PMID: 37001285 DOI: 10.1016/j.bbrc.2023.03.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 03/10/2023] [Accepted: 03/10/2023] [Indexed: 03/30/2023]
3
Li Q, Newaz K, Milenković T. Towards future directions in data-integrative supervised prediction of human aging-related genes. BIOINFORMATICS ADVANCES 2022;2:vbac081. [PMID: 36699345 PMCID: PMC9710570 DOI: 10.1093/bioadv/vbac081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 09/23/2022] [Accepted: 10/31/2022] [Indexed: 11/13/2022]
4
Newaz K, Piland J, Clark PL, Emrich SJ, Li J, Milenković T. Multi-layer sequential network analysis improves protein 3D structural classification. Proteins 2022;90:1721-1731. [PMID: 35441395 PMCID: PMC9356989 DOI: 10.1002/prot.26349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 03/04/2022] [Accepted: 03/30/2022] [Indexed: 11/08/2022]
5
Komar AA. A Code Within a Code: How Codons Fine-Tune Protein Folding in the Cell. BIOCHEMISTRY (MOSCOW) 2021;86:976-991. [PMID: 34488574 DOI: 10.1134/s0006297921080083] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
6
Brysbaert G, Lensink MF. Centrality Measures in Residue Interaction Networks to Highlight Amino Acids in Protein–Protein Binding. FRONTIERS IN BIOINFORMATICS 2021;1:684970. [PMID: 36303777 PMCID: PMC9581030 DOI: 10.3389/fbinf.2021.684970] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 05/17/2021] [Indexed: 12/21/2022]  Open
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