• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5074186)   Today's Articles (190)
For: Smolander J, Junttila S, Venäläinen MS, Elo LL. scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data. Bioinformatics 2021;38:1328-1335. [PMID: 34888622 PMCID: PMC8825760 DOI: 10.1093/bioinformatics/btab831] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 11/30/2021] [Accepted: 12/03/2021] [Indexed: 01/05/2023]  Open
Number Cited by Other Article(s)
1
Liarou M, Matthes T, Marchand-Maillet S. TimeFlow: A Density-Driven Pseudotime Method for Flow Cytometry Data Analysis. Cytometry A 2025;107:233-247. [PMID: 40111028 DOI: 10.1002/cyto.a.24928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 01/15/2025] [Accepted: 02/27/2025] [Indexed: 03/22/2025]
2
Chen X, Ma Y, Shi Y, Zhang B, Wu H, Gao J. Fuzzy-Based Identification of Transition Cells to Infer Cell Trajectory for Single-Cell Transcriptomics. J Comput Biol 2025;32:253-273. [PMID: 39670822 DOI: 10.1089/cmb.2023.0432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2024]  Open
3
Ren J, Zhou Y, Hu Y, Yang J, Fang H, Lyu X, Guo J, Shi X, Li Q. A model-based factorization method for scRNA data unveils bifurcating transcriptional modules underlying cell fate determination. eLife 2025;13:RP97424. [PMID: 39907554 PMCID: PMC11798574 DOI: 10.7554/elife.97424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2025]  Open
4
Yin QZ, Liu YJ, Zhang Q, Xi SY, Yang TB, Li JP, Gao J. Overexpression of Basonuclin Zinc Finger Protein 2 in stromal cell is related to mesenchymal phenotype and immunosuppression of mucinous colorectal adenocarcinoma. Int Immunopharmacol 2024;142:113184. [PMID: 39306894 DOI: 10.1016/j.intimp.2024.113184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 09/02/2024] [Accepted: 09/13/2024] [Indexed: 10/12/2024]
5
Shi Y, Wan J, Zhang X, Liang T, Yin Y. scCRT: a contrastive-based dimensionality reduction model for scRNA-seq trajectory inference. Brief Bioinform 2024;25:bbae204. [PMID: 38701412 PMCID: PMC11066919 DOI: 10.1093/bib/bbae204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 03/28/2024] [Accepted: 04/15/2024] [Indexed: 05/05/2024]  Open
6
Pan X, Zhang X. Studying temporal dynamics of single cells: expression, lineage and regulatory networks. Biophys Rev 2024;16:57-67. [PMID: 38495440 PMCID: PMC10937865 DOI: 10.1007/s12551-023-01090-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 06/27/2023] [Indexed: 03/19/2024]  Open
7
Islam MT, Xing L. Leveraging cell-cell similarity for high-performance spatial and temporal cellular mappings from gene expression data. PATTERNS (NEW YORK, N.Y.) 2023;4:100840. [PMID: 37876896 PMCID: PMC10591141 DOI: 10.1016/j.patter.2023.100840] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 06/29/2023] [Accepted: 08/10/2023] [Indexed: 10/26/2023]
8
Smolander J, Junttila S, Elo LL. Cell-connectivity-guided trajectory inference from single-cell data. Bioinformatics 2023;39:btad515. [PMID: 37624916 PMCID: PMC10474950 DOI: 10.1093/bioinformatics/btad515] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 07/24/2023] [Accepted: 08/23/2023] [Indexed: 08/27/2023]  Open
9
Nie X, Qin D, Zhou X, Duo H, Hao Y, Li B, Liang G. Clustering ensemble in scRNA-seq data analysis: Methods, applications and challenges. Comput Biol Med 2023;159:106939. [PMID: 37075602 DOI: 10.1016/j.compbiomed.2023.106939] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 03/31/2023] [Accepted: 04/14/2023] [Indexed: 04/21/2023]
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA