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For: Dührkop K. OUP accepted manuscript. Bioinformatics 2022;38:i342-i349. [PMID: 35758813 PMCID: PMC9235503 DOI: 10.1093/bioinformatics/btac260] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]  Open
Number Cited by Other Article(s)
1
Chau HYK, Zhang X, Ressom HW. Deep Learning-Based Molecular Fingerprint Prediction for Metabolite Annotation. Metabolites 2025;15:132. [PMID: 39997757 PMCID: PMC11857613 DOI: 10.3390/metabo15020132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2025] [Revised: 02/07/2025] [Accepted: 02/10/2025] [Indexed: 02/26/2025]  Open
2
Adduri AK, McNutt AT, Ellington CN, Suraparaju K, Fang N, Yan D, Krummenacher B, Li S, Bodden C, Xing EP, Behsaz B, Koes D, Mohimani H. Interpretable adenylation domain specificity prediction using protein language models. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.01.13.632878. [PMID: 39868251 PMCID: PMC11761653 DOI: 10.1101/2025.01.13.632878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2025]
3
Bui-Thi D, Liu Y, Lippens JL, Laukens K, De Vijlder T. TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry. J Cheminform 2024;16:61. [PMID: 38807166 PMCID: PMC11134763 DOI: 10.1186/s13321-024-00858-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 05/12/2024] [Indexed: 05/30/2024]  Open
4
Heid E, Greenman KP, Chung Y, Li SC, Graff DE, Vermeire FH, Wu H, Green WH, McGill CJ. Chemprop: A Machine Learning Package for Chemical Property Prediction. J Chem Inf Model 2024;64:9-17. [PMID: 38147829 PMCID: PMC10777403 DOI: 10.1021/acs.jcim.3c01250] [Citation(s) in RCA: 94] [Impact Index Per Article: 94.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 12/04/2023] [Accepted: 12/05/2023] [Indexed: 12/28/2023]
5
Rutz A, Wolfender JL. Automated Composition Assessment of Natural Extracts: Untargeted Mass Spectrometry-Based Metabolite Profiling Integrating Semiquantitative Detection. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023;71:18010-18023. [PMID: 37949451 PMCID: PMC10683005 DOI: 10.1021/acs.jafc.3c03099] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 09/19/2023] [Accepted: 09/22/2023] [Indexed: 11/12/2023]
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