• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5078129)   Today's Articles (443)
For: Gromiha MM, Suwa M. A simple statistical method for discriminating outer membrane proteins with better accuracy. Bioinformatics 2004;21:961-8. [PMID: 15531602 DOI: 10.1093/bioinformatics/bti126] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Roterman I, Stapor K, Konieczny L. Transmembrane proteins-Different anchoring systems. Proteins 2024;92:593-609. [PMID: 38062872 DOI: 10.1002/prot.26646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 11/03/2023] [Accepted: 11/17/2023] [Indexed: 04/13/2024]
2
Ou YY, Ho QT, Chang HT. Recent advances in features generation for membrane protein sequences: From multiple sequence alignment to pre-trained language models. Proteomics 2023;23:e2200494. [PMID: 37863817 DOI: 10.1002/pmic.202200494] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 09/19/2023] [Accepted: 09/20/2023] [Indexed: 10/22/2023]
3
Su W, Qian X, Yang K, Ding H, Huang C, Zhang Z. Recognition of outer membrane proteins using multiple feature fusion. Front Genet 2023;14:1211020. [PMID: 37351347 PMCID: PMC10284346 DOI: 10.3389/fgene.2023.1211020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 05/24/2023] [Indexed: 06/24/2023]  Open
4
Mejias-Gomez O, Madsen AV, Skovgaard K, Pedersen LE, Morth JP, Jenkins TP, Kristensen P, Goletz S. A window into the human immune system: comprehensive characterization of the complexity of antibody complementary-determining regions in functional antibodies. MAbs 2023;15:2268255. [PMID: 37876265 PMCID: PMC10601506 DOI: 10.1080/19420862.2023.2268255] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 10/04/2023] [Indexed: 10/26/2023]  Open
5
Jiang M, Zhao B, Luo S, Wang Q, Chu Y, Chen T, Mao X, Liu Y, Wang Y, Jiang X, Wei DQ, Xiong Y. NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Brief Bioinform 2021;22:6350884. [PMID: 34396388 DOI: 10.1093/bib/bbab310] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 07/01/2021] [Accepted: 07/18/2021] [Indexed: 12/13/2022]  Open
6
Ho QT, Nguyen TTD, Khanh Le NQ, Ou YY. FAD-BERT: Improved prediction of FAD binding sites using pre-training of deep bidirectional transformers. Comput Biol Med 2021;131:104258. [PMID: 33601085 DOI: 10.1016/j.compbiomed.2021.104258] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/16/2021] [Accepted: 02/03/2021] [Indexed: 02/07/2023]
7
Jeon J, Yau WM, Tycko R. Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase. J Am Chem Soc 2020;142:21220-21232. [PMID: 33280387 DOI: 10.1021/jacs.0c11156] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
8
MFSC: Multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components. J Theor Biol 2019;463:99-109. [DOI: 10.1016/j.jtbi.2018.12.017] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 12/02/2018] [Accepted: 12/14/2018] [Indexed: 12/29/2022]
9
Kikuchi N, Fujiwara K, Ikeguchi M. β‐Strand twisting/bending in soluble and transmembrane β‐barrel structures. Proteins 2018;86:1231-1241. [DOI: 10.1002/prot.25576] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2018] [Revised: 06/05/2018] [Accepted: 06/22/2018] [Indexed: 01/03/2023]
10
An in silico structural and physicochemical characterization of TonB-dependent copper receptor in A. baumannii. Microb Pathog 2018. [DOI: 10.1016/j.micpath.2018.03.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
11
Bersimis S, Sachlas A, Bagos PG. Discriminating membrane proteins using the joint distribution of length sums of success and failure runs. STAT METHOD APPL-GER 2017. [DOI: 10.1007/s10260-016-0370-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
12
Le NQK, Nguyen TTD, Ou YY. Identifying the molecular functions of electron transport proteins using radial basis function networks and biochemical properties. J Mol Graph Model 2017;73:166-178. [DOI: 10.1016/j.jmgm.2017.01.003] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Revised: 12/26/2016] [Accepted: 01/04/2017] [Indexed: 10/20/2022]
13
Ofer D, Linial M. ProFET: Feature engineering captures high-level protein functions. Bioinformatics 2015;31:3429-36. [DOI: 10.1093/bioinformatics/btv345] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 05/29/2015] [Indexed: 11/13/2022]  Open
14
Yamamoto-Tamura K, Kawagishi I, Ogawa N, Fujii T. A putative porin gene of Burkholderia sp. NK8 involved in chemotaxis toward β-ketoadipate. Biosci Biotechnol Biochem 2015;79:926-36. [PMID: 25649919 DOI: 10.1080/09168451.2015.1006571] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
15
Haake DA, Zückert WR. The leptospiral outer membrane. Curr Top Microbiol Immunol 2015;387:187-221. [PMID: 25388136 DOI: 10.1007/978-3-662-45059-8_8] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
16
Tripathi V, Tripathi P, Gupta D. Statistical approach for lysosomal membrane proteins (LMPs) identification. SYSTEMS AND SYNTHETIC BIOLOGY 2014;8:313-9. [PMID: 26396655 PMCID: PMC4571724 DOI: 10.1007/s11693-014-9153-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Revised: 06/11/2014] [Accepted: 07/26/2014] [Indexed: 10/25/2022]
17
RETRACTED: Identifying halophilic proteins based on random forests with preprocessing of the pseudo-amino acid composition. J Theor Biol 2014;361:175-81. [DOI: 10.1016/j.jtbi.2014.07.017] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Revised: 07/14/2014] [Accepted: 07/15/2014] [Indexed: 01/07/2023]
18
Guilvout I, Chami M, Disconzi E, Bayan N, Pugsley AP, Huysmans GHM. Independent domain assembly in a trapped folding intermediate of multimeric outer membrane secretins. Structure 2014;22:582-9. [PMID: 24657091 DOI: 10.1016/j.str.2014.02.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Revised: 01/27/2014] [Accepted: 02/11/2014] [Indexed: 11/28/2022]
19
Saravanan K, Krishnaswamy S. Analysis of dihedral angle preferences for alanine and glycine residues in alpha and beta transmembrane regions. J Biomol Struct Dyn 2014;33:552-62. [DOI: 10.1080/07391102.2014.895678] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
20
Ni Q, Zou L. Accurate discrimination of outer membrane proteins using secondary structure element alignment and support vector machine. J Bioinform Comput Biol 2014;12:1450003. [PMID: 24467761 DOI: 10.1142/s0219720014500036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
21
Ru B, 't Hoen PAC, Nie F, Lin H, Guo FB, Huang J. PhD7Faster: predicting clones propagating faster from the Ph.D.-7 phage display peptide library. J Bioinform Comput Biol 2014;12:1450005. [PMID: 24467763 DOI: 10.1142/s021972001450005x] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
22
Yan R, Lin J, Chen Z, Wang X, Huang L, Cai W, Zhang Z. Prediction of outer membrane proteins by combining the position- and composition-based features of sequence profiles. MOLECULAR BIOSYSTEMS 2014;10:1004-13. [DOI: 10.1039/c3mb70435a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
23
AcalPred: a sequence-based tool for discriminating between acidic and alkaline enzymes. PLoS One 2013;8:e75726. [PMID: 24130738 PMCID: PMC3794003 DOI: 10.1371/journal.pone.0075726] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2013] [Accepted: 08/16/2013] [Indexed: 11/19/2022]  Open
24
Feher VA, Randall A, Baldi P, Bush RM, de la Maza LM, Amaro RE. A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins. PLoS One 2013;8:e68934. [PMID: 23935908 PMCID: PMC3723809 DOI: 10.1371/journal.pone.0068934] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Accepted: 06/04/2013] [Indexed: 01/17/2023]  Open
25
Ou YY, Chen SA, Chang YM, Velmurugan D, Fukui K, Michael Gromiha M. Identification of efflux proteins using efficient radial basis function networks with position-specific scoring matrices and biochemical properties. Proteins 2013;81:1634-43. [DOI: 10.1002/prot.24322] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2013] [Revised: 04/11/2013] [Accepted: 04/19/2013] [Indexed: 11/11/2022]
26
Thangakani AM, Kumar S, Velmurugan D, Gromiha MM. Distinct position-specific sequence features of hexa-peptides that form amyloid-fibrils: application to discriminate between amyloid fibril and amorphous β-aggregate forming peptide sequences. BMC Bioinformatics 2013;14 Suppl 8:S6. [PMID: 23815227 PMCID: PMC3654898 DOI: 10.1186/1471-2105-14-s8-s6] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
27
Gromiha MM, Ou YY. Bioinformatics approaches for functional annotation of membrane proteins. Brief Bioinform 2013;15:155-68. [DOI: 10.1093/bib/bbt015] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
28
MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2012;1824:1425-33. [PMID: 22705560 DOI: 10.1016/j.bbapap.2012.05.018] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Revised: 05/20/2012] [Accepted: 05/31/2012] [Indexed: 12/29/2022]
29
CHEN YUEHUI, CHEN FENG, YANG JACKY, YANG MARYQU. ENSEMBLE VOTING SYSTEM FOR MULTICLASS PROTEIN FOLD RECOGNITION. INT J PATTERN RECOGN 2011. [DOI: 10.1142/s0218001408006454] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
30
Liang GZ, Ma XY, Li YC, Lv FL, Yang L. Toward an improved discrimination of outer membrane proteins using a sequence-based approach. Biosystems 2011;105:101-6. [PMID: 21440034 DOI: 10.1016/j.biosystems.2011.03.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2010] [Revised: 03/16/2011] [Accepted: 03/16/2011] [Indexed: 11/26/2022]
31
Outer membrane proteins can be simply identified using secondary structure element alignment. BMC Bioinformatics 2011;12:76. [PMID: 21414186 PMCID: PMC3072342 DOI: 10.1186/1471-2105-12-76] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2010] [Accepted: 03/17/2011] [Indexed: 02/04/2023]  Open
32
Lin H, Ding H. Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition. J Theor Biol 2011;269:64-9. [DOI: 10.1016/j.jtbi.2010.10.019] [Citation(s) in RCA: 110] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2010] [Revised: 08/31/2010] [Accepted: 10/15/2010] [Indexed: 12/11/2022]
33
Mizianty MJ, Kurgan L. Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information. Proteins 2010;79:294-303. [DOI: 10.1002/prot.22882] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
34
Tanaka T, Niwa H, Yutani K, Kuramitsu S, Yokoyama S, Kumarevel T. Crystal structure of TTHA0061, an uncharacterized protein from Thermus thermophilus HB8, reveals a novel fold. Biochem Biophys Res Commun 2010;400:258-264. [PMID: 20728427 DOI: 10.1016/j.bbrc.2010.08.054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2010] [Accepted: 08/17/2010] [Indexed: 05/29/2023]
35
iFC²: an integrated web-server for improved prediction of protein structural class, fold type, and secondary structure content. Amino Acids 2010;40:963-73. [PMID: 20730460 DOI: 10.1007/s00726-010-0721-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2010] [Accepted: 08/06/2010] [Indexed: 10/19/2022]
36
Classifying proteins using gapped Markov feature pairs. Neurocomputing 2010. [DOI: 10.1016/j.neucom.2009.12.038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
37
Ou YY, Chen SA, Gromiha MM. Classification of transporters using efficient radial basis function networks with position-specific scoring matrices and biochemical properties. Proteins 2010;78:1789-97. [DOI: 10.1002/prot.22694] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
38
Mizianty MJ, Kurgan L. Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences. BMC Bioinformatics 2009;10:414. [PMID: 20003388 PMCID: PMC2805645 DOI: 10.1186/1471-2105-10-414] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2009] [Accepted: 12/13/2009] [Indexed: 11/13/2022]  Open
39
Gao QB, Ye XF, Jin ZC, He J. Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition. Anal Biochem 2009;398:52-9. [PMID: 19874797 DOI: 10.1016/j.ab.2009.10.040] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2009] [Revised: 10/21/2009] [Accepted: 10/22/2009] [Indexed: 10/20/2022]
40
Using auto covariance method for functional discrimination of membrane proteins based on evolution information. Amino Acids 2009;38:1497-503. [DOI: 10.1007/s00726-009-0362-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2009] [Accepted: 09/24/2009] [Indexed: 11/29/2022]
41
Díaz-Mejía JJ, Babu M, Emili A. Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome. FEMS Microbiol Rev 2008;33:66-97. [PMID: 19054114 PMCID: PMC2704936 DOI: 10.1111/j.1574-6976.2008.00141.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
42
Waldispühl J, O'Donnell CW, Devadas S, Clote P, Berger B. Modeling ensembles of transmembrane beta-barrel proteins. Proteins 2008;71:1097-112. [PMID: 18004792 DOI: 10.1002/prot.21788] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
43
Chen K, Kurgan LA, Ruan J. Prediction of protein structural class using novel evolutionary collocation-based sequence representation. J Comput Chem 2008;29:1596-604. [PMID: 18293306 DOI: 10.1002/jcc.20918] [Citation(s) in RCA: 116] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
44
Ou YY, Gromiha M, Chen SA, Suwa M. TMBETADISC-RBF: Discrimination of -barrel membrane proteins using RBF networks and PSSM profiles. Comput Biol Chem 2008;32:227-31. [DOI: 10.1016/j.compbiolchem.2008.03.002] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2007] [Revised: 03/11/2008] [Accepted: 03/11/2008] [Indexed: 10/22/2022]
45
Kurgan LA, Zhang T, Zhang H, Shen S, Ruan J. Secondary structure-based assignment of the protein structural classes. Amino Acids 2008;35:551-64. [DOI: 10.1007/s00726-008-0080-3] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2008] [Accepted: 02/27/2008] [Indexed: 11/24/2022]
46
Martin J, de Brevern AG, Camproux AC. In silico local structure approach: a case study on outer membrane proteins. Proteins 2008;71:92-109. [PMID: 17932925 DOI: 10.1002/prot.21659] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
47
Sadovskaya NS, Gelfand MS. Benchmarking of programs that predict the position of transmembrane segments in beta-barrel proteins. Biophysics (Nagoya-shi) 2008. [DOI: 10.1134/s0006350908020036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
48
Gromiha MM, Suresh MX. Discrimination of mesophilic and thermophilic proteins using machine learning algorithms. Proteins 2008;70:1274-9. [PMID: 17876820 DOI: 10.1002/prot.21616] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
49
Gromiha MM, Yabuki Y. Functional discrimination of membrane proteins using machine learning techniques. BMC Bioinformatics 2008;9:135. [PMID: 18312695 PMCID: PMC2375119 DOI: 10.1186/1471-2105-9-135] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2007] [Accepted: 03/03/2008] [Indexed: 11/30/2022]  Open
50
Lin H. The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J Theor Biol 2008;252:350-6. [PMID: 18355838 DOI: 10.1016/j.jtbi.2008.02.004] [Citation(s) in RCA: 182] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2007] [Revised: 12/02/2007] [Accepted: 02/04/2008] [Indexed: 11/15/2022]
PrevPage 1 of 2 12Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA