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For: Zhang XD, Heyse JF. Determination of sample size in genome-scale RNAi screens. Bioinformatics 2009;25:841-4. [PMID: 19223447 DOI: 10.1093/bioinformatics/btp082] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Mohr SE. RNAi screening in Drosophila cells and in vivo. Methods 2014;68:82-8. [PMID: 24576618 DOI: 10.1016/j.ymeth.2014.02.018] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Revised: 02/07/2014] [Accepted: 02/13/2014] [Indexed: 12/31/2022]  Open
2
Zhang XD, Heyse JF. Contrast Variable for Group Comparisons in Biopharmaceutical Research. Stat Biopharm Res 2012. [DOI: 10.1080/19466315.2011.646905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
3
Buchser WJ, Smith RP, Pardinas JR, Haddox CL, Hutson T, Moon L, Hoffman SR, Bixby JL, Lemmon VP. Peripheral nervous system genes expressed in central neurons induce growth on inhibitory substrates. PLoS One 2012;7:e38101. [PMID: 22701605 PMCID: PMC3368946 DOI: 10.1371/journal.pone.0038101] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2012] [Accepted: 05/03/2012] [Indexed: 11/28/2022]  Open
4
Grover D, Nunez-Iglesias J. Betamax: Towards Optimal Sampling Strategies for High-Throughput Screens. J Comput Biol 2012;19:776-84. [DOI: 10.1089/cmb.2012.0036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
5
Yu D, Danku J, Baxter I, Kim S, Vatamaniuk OK, Salt DE, Vitek O. Noise reduction in genome-wide perturbation screens using linear mixed-effect models. Bioinformatics 2011;27:2173-80. [PMID: 21685046 PMCID: PMC3150043 DOI: 10.1093/bioinformatics/btr359] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2011] [Revised: 05/31/2011] [Accepted: 06/08/2011] [Indexed: 11/12/2022]  Open
6
Jiang M, Instrell R, Saunders B, Berven H, Howell M. Tales from an academic RNAi screening facility; FAQs. Brief Funct Genomics 2011;10:227-37. [PMID: 21527443 DOI: 10.1093/bfgp/elr016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
7
Zhang XD. Illustration of SSMD, z score, SSMD*, z* score, and t statistic for hit selection in RNAi high-throughput screens. ACTA ACUST UNITED AC 2011;16:775-85. [PMID: 21515799 DOI: 10.1177/1087057111405851] [Citation(s) in RCA: 130] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
8
Booker M, Samsonova AA, Kwon Y, Flockhart I, Mohr SE, Perrimon N. False negative rates in Drosophila cell-based RNAi screens: a case study. BMC Genomics 2011;12:50. [PMID: 21251254 PMCID: PMC3036618 DOI: 10.1186/1471-2164-12-50] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2010] [Accepted: 01/20/2011] [Indexed: 01/13/2023]  Open
9
Jain S, Heutink P. From single genes to gene networks: high-throughput-high-content screening for neurological disease. Neuron 2010;68:207-17. [PMID: 20955929 DOI: 10.1016/j.neuron.2010.10.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/04/2010] [Indexed: 11/30/2022]
10
Zhang XD, Lacson R, Yang R, Marine SD, McCampbell A, Toolan DM, Hare TR, Kajdas J, Berger JP, Holder DJ, Heyse JF, Ferrer M. The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens. ACTA ACUST UNITED AC 2010;15:1123-31. [PMID: 20852024 DOI: 10.1177/1087057110381919] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
11
Maynard ND, Gutschow MV, Birch EW, Covert MW. The virus as metabolic engineer. Biotechnol J 2010;5:686-94. [PMID: 20665642 PMCID: PMC3004434 DOI: 10.1002/biot.201000080] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
12
Zhang XD. Assessing the size of gene or RNAi effects in multifactor high-throughput experiments. Pharmacogenomics 2010;11:199-213. [PMID: 20136359 DOI: 10.2217/pgs.09.136] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
13
Zhang XD. Strictly Standardized Mean Difference, Standardized Mean Difference and Classicalt-test for the Comparison of Two Groups. Stat Biopharm Res 2010. [DOI: 10.1198/sbr.2009.0074] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
14
Mohr S, Bakal C, Perrimon N. Genomic screening with RNAi: results and challenges. Annu Rev Biochem 2010;79:37-64. [PMID: 20367032 PMCID: PMC3564595 DOI: 10.1146/annurev-biochem-060408-092949] [Citation(s) in RCA: 220] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
15
Klinghoffer RA, Frazier J, Annis J, Berndt JD, Roberts BS, Arthur WT, Lacson R, Zhang XD, Ferrer M, Moon RT, Cleary MA. A lentivirus-mediated genetic screen identifies dihydrofolate reductase (DHFR) as a modulator of beta-catenin/GSK3 signaling. PLoS One 2009;4:e6892. [PMID: 19727391 PMCID: PMC2731218 DOI: 10.1371/journal.pone.0006892] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2009] [Accepted: 08/06/2009] [Indexed: 11/18/2022]  Open
16
Birmingham A, Selfors LM, Forster T, Wrobel D, Kennedy CJ, Shanks E, Santoyo-Lopez J, Dunican DJ, Long A, Kelleher D, Smith Q, Beijersbergen RL, Ghazal P, Shamu CE. Statistical methods for analysis of high-throughput RNA interference screens. Nat Methods 2009;6:569-75. [PMID: 19644458 PMCID: PMC2789971 DOI: 10.1038/nmeth.1351] [Citation(s) in RCA: 451] [Impact Index Per Article: 28.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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