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For: Zhang NR, Senbabaoglu Y, Li JZ. Joint estimation of DNA copy number from multiple platforms. Bioinformatics 2010;26:153-60. [PMID: 19933593 PMCID: PMC2852203 DOI: 10.1093/bioinformatics/btp653] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2009] [Revised: 10/19/2009] [Accepted: 11/09/2009] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Wang J, Gui L, Su WJ, Sabatti C, Owen AB. DETECTING MULTIPLE REPLICATING SIGNALS USING ADAPTIVE FILTERING PROCEDURES. Ann Stat 2022;50:1890-1909. [PMID: 39421244 PMCID: PMC11486506 DOI: 10.1214/21-aos2139] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2024]
2
Synthesis, structure and properties of tris(1-ethyl-4-isopropyl-imidazolyl-κN)phosphine copper(II). Inorganica Chim Acta 2015. [DOI: 10.1016/j.ica.2015.05.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
3
Subramanian A, Shackney S, Schwartz R. Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2013;10:1422-1431. [PMID: 24407301 PMCID: PMC3830698 DOI: 10.1109/tcbb.2013.33] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
4
McCallum KJ, Wang JP. Quantifying copy number variations using a hidden Markov model with inhomogeneous emission distributions. Biostatistics 2013;14:600-11. [PMID: 23428932 DOI: 10.1093/biostatistics/kxt003] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
5
Nilsen G, Liestøl K, Van Loo P, Moen Vollan HK, Eide MB, Rueda OM, Chin SF, Russell R, Baumbusch LO, Caldas C, Børresen-Dale AL, Lingjaerde OC. Copynumber: Efficient algorithms for single- and multi-track copy number segmentation. BMC Genomics 2012;13:591. [PMID: 23442169 PMCID: PMC3582591 DOI: 10.1186/1471-2164-13-591] [Citation(s) in RCA: 212] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2012] [Accepted: 10/15/2012] [Indexed: 12/15/2022]  Open
6
Yang TY. Simple binary segmentation frameworks for identifying variation in DNA copy number. BMC Bioinformatics 2012;13:277. [PMID: 23107320 PMCID: PMC3571941 DOI: 10.1186/1471-2105-13-277] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2012] [Accepted: 10/22/2012] [Indexed: 11/25/2022]  Open
7
Zhang Z, Lange K, Sabatti C. Reconstructing DNA copy number by joint segmentation of multiple sequences. BMC Bioinformatics 2012;13:205. [PMID: 22897923 PMCID: PMC3534631 DOI: 10.1186/1471-2105-13-205] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2012] [Accepted: 07/27/2012] [Indexed: 12/19/2022]  Open
8
Levy RJ, Xu B, Gogos JA, Karayiorgou M. Copy number variation and psychiatric disease risk. Methods Mol Biol 2012;838:97-113. [PMID: 22228008 DOI: 10.1007/978-1-61779-507-7_4] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
9
A meta-analysis of array-CGH studies implicates antiviral immunity pathways in the development of hepatocellular carcinoma. PLoS One 2011;6:e28404. [PMID: 22174799 PMCID: PMC3236189 DOI: 10.1371/journal.pone.0028404] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2011] [Accepted: 11/07/2011] [Indexed: 12/20/2022]  Open
10
Morganella S, Pagnotta SM, Ceccarelli M. Finding recurrent copy number alterations preserving within-sample homogeneity. ACTA ACUST UNITED AC 2011;27:2949-56. [PMID: 21873327 DOI: 10.1093/bioinformatics/btr488] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
11
Siegmund D, Yakir B, Zhang NR. Detecting simultaneous variant intervals in aligned sequences. Ann Appl Stat 2011. [DOI: 10.1214/10-aoas400] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
12
Teo SM, Pawitan Y, Kumar V, Thalamuthu A, Seielstad M, Chia KS, Salim A. Multi-platform segmentation for joint detection of copy number variants. Bioinformatics 2011;27:1555-61. [PMID: 21471018 DOI: 10.1093/bioinformatics/btr162] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Picard F, Lebarbier E, Hoebeke M, Rigaill G, Thiam B, Robin S. Joint segmentation, calling, and normalization of multiple CGH profiles. Biostatistics 2011;12:413-28. [PMID: 21209153 DOI: 10.1093/biostatistics/kxq076] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
14
Bengtsson H, Neuvial P, Speed TP. TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays. BMC Bioinformatics 2010;11:245. [PMID: 20462408 PMCID: PMC2894037 DOI: 10.1186/1471-2105-11-245] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2009] [Accepted: 05/12/2010] [Indexed: 12/15/2022]  Open
15
Zhang NR. DNA Copy Number Profiling in Normal and Tumor Genomes. FRONTIERS IN COMPUTATIONAL AND SYSTEMS BIOLOGY 2010. [DOI: 10.1007/978-1-84996-196-7_14] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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