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For: Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM. Neuroconductor: an R platform for medical imaging analysis. Biostatistics 2019;20:218-239. [PMID: 29325029 DOI: 10.1093/biostatistics/kxx068] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 11/12/2017] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Butler M, Shah P, Ozgen B, Michals EA, Geraghty JR, Testai FD, Maharathi B, Loeb JA. Automated segmentation of ventricular volumes and subarachnoid hemorrhage from computed tomography images: Evaluation of a rule-based pipeline approach. Neuroradiol J 2025;38:30-43. [PMID: 38869365 PMCID: PMC11571338 DOI: 10.1177/19714009241260791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]  Open
2
Manning AR, Beck ES, Schindler MK, Nair G, Clark KA, Parvathaneni P, Reich DS, Shinohara RT, Solomon AJ. T1 /T2 ratio from 3T MRI improves multiple sclerosis cortical lesion contrast. J Neuroimaging 2023;33:434-445. [PMID: 36715449 PMCID: PMC10175128 DOI: 10.1111/jon.13088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 01/11/2023] [Accepted: 01/12/2023] [Indexed: 01/31/2023]  Open
3
Bush KA, Calvert ML, Kilts CD. Lessons learned: A neuroimaging research center's transition to open and reproducible science. Front Big Data 2022;5:988084. [PMID: 36105538 PMCID: PMC9464934 DOI: 10.3389/fdata.2022.988084] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 08/10/2022] [Indexed: 11/13/2022]  Open
4
Earth Mover’s Distance-Based Tool for Rapid Screening of Cervical Cancer Using Cervigrams. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094661] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
5
Li Q, Yuan Y, Song G, Liu Y. Nursing Analysis Based on Medical Imaging Technology before and after Coronary Angiography in Cardiovascular Medicine. Appl Bionics Biomech 2022;2022:3279068. [PMID: 35465185 PMCID: PMC9033406 DOI: 10.1155/2022/3279068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 03/19/2022] [Accepted: 03/29/2022] [Indexed: 11/17/2022]  Open
6
Fatania K, Clark A, Frood R, Scarsbrook A, Al-Qaisieh B, Currie S, Nix M. Harmonisation of scanner-dependent contrast variations in magnetic resonance imaging for radiation oncology, using style-blind auto-encoders. Phys Imaging Radiat Oncol 2022;22:115-122. [PMID: 35619643 PMCID: PMC9127401 DOI: 10.1016/j.phro.2022.05.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 05/06/2022] [Accepted: 05/09/2022] [Indexed: 11/20/2022]  Open
7
Persson S, Pownall M. Can Open Science be a Tool to Dismantle Claims of Hardwired Brain Sex Differences? Opportunities and Challenges for Feminist Researchers. PSYCHOLOGY OF WOMEN QUARTERLY 2021. [DOI: 10.1177/03616843211037613] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
8
Radiomics complements clinical, radiological, and technical features to assess local control of colorectal cancer lung metastases treated with radiofrequency ablation. Eur Radiol 2021;31:8302-8314. [PMID: 33954806 DOI: 10.1007/s00330-021-07998-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 03/21/2021] [Accepted: 04/13/2021] [Indexed: 02/06/2023]
9
Tustison NJ, Cook PA, Holbrook AJ, Johnson HJ, Muschelli J, Devenyi GA, Duda JT, Das SR, Cullen NC, Gillen DL, Yassa MA, Stone JR, Gee JC, Avants BB. The ANTsX ecosystem for quantitative biological and medical imaging. Sci Rep 2021;11:9068. [PMID: 33907199 PMCID: PMC8079440 DOI: 10.1038/s41598-021-87564-6] [Citation(s) in RCA: 112] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 03/25/2021] [Indexed: 02/02/2023]  Open
10
Lamballais S, Muetzel RL. QDECR: A Flexible, Extensible Vertex-Wise Analysis Framework in R. Front Neuroinform 2021;15:561689. [PMID: 33967730 PMCID: PMC8100226 DOI: 10.3389/fninf.2021.561689] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 03/29/2021] [Indexed: 11/17/2022]  Open
11
Marcon Y, Bishop T, Avraam D, Escriba-Montagut X, Ryser-Welch P, Wheater S, Burton P, González JR. Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD. PLoS Comput Biol 2021;17:e1008880. [PMID: 33784300 PMCID: PMC8034722 DOI: 10.1371/journal.pcbi.1008880] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 04/09/2021] [Accepted: 03/17/2021] [Indexed: 01/31/2023]  Open
12
Crombé A, Buy X, Han F, Toupin S, Kind M. Assessment of Repeatability, Reproducibility, and Performances of T2 Mapping-Based Radiomics Features: A Comparative Study. J Magn Reson Imaging 2021;54:537-548. [PMID: 33594768 DOI: 10.1002/jmri.27558] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 01/26/2021] [Accepted: 01/26/2021] [Indexed: 12/20/2022]  Open
13
Avants BB, Tustison NJ, Stone JR. Similarity-driven multi-view embeddings from high-dimensional biomedical data. NATURE COMPUTATIONAL SCIENCE 2021;1:143-152. [PMID: 33796865 PMCID: PMC8009088 DOI: 10.1038/s43588-021-00029-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 01/19/2021] [Indexed: 12/31/2022]
14
Automatic segmentation of white matter hyperintensities from brain magnetic resonance images in the era of deep learning and big data - A systematic review. Comput Med Imaging Graph 2021;88:101867. [PMID: 33508567 DOI: 10.1016/j.compmedimag.2021.101867] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 12/23/2020] [Accepted: 12/31/2020] [Indexed: 11/20/2022]
15
Sörös P, Wölk L, Bantel C, Bräuer A, Klawonn F, Witt K. Replicability, Repeatability, and Long-term Reproducibility of Cerebellar Morphometry. THE CEREBELLUM 2021;20:439-453. [PMID: 33421018 PMCID: PMC8213608 DOI: 10.1007/s12311-020-01227-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Accepted: 12/15/2020] [Indexed: 01/09/2023]
16
Mowinckel AM, Vidal-Piñeiro D. Visualization of Brain Statistics With R Packages ggseg and ggseg3d. ADVANCES IN METHODS AND PRACTICES IN PSYCHOLOGICAL SCIENCE 2020. [DOI: 10.1177/2515245920928009] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
17
Gherman A, Muschelli J, Caffo B, Crainiceanu C. Rxnat: An Open-Source R Package for XNAT-Based Repositories. Front Neuroinform 2020;14:572068. [PMID: 33240070 PMCID: PMC7680896 DOI: 10.3389/fninf.2020.572068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 10/07/2020] [Indexed: 11/13/2022]  Open
18
Tustison NJ, Holbrook AJ, Avants BB, Roberts JM, Cook PA, Reagh ZM, Duda JT, Stone JR, Gillen DL, Yassa MA. Longitudinal Mapping of Cortical Thickness Measurements: An Alzheimer's Disease Neuroimaging Initiative-Based Evaluation Study. J Alzheimers Dis 2020;71:165-183. [PMID: 31356207 DOI: 10.3233/jad-190283] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
19
Crombé A, Kind M, Fadli D, Le Loarer F, Italiano A, Buy X, Saut O. Intensity harmonization techniques influence radiomics features and radiomics-based predictions in sarcoma patients. Sci Rep 2020;10:15496. [PMID: 32968131 PMCID: PMC7511974 DOI: 10.1038/s41598-020-72535-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Accepted: 08/24/2020] [Indexed: 12/12/2022]  Open
20
Deep Volumetric Feature Encoding for Biomedical Images. BIOMEDICAL IMAGE REGISTRATION 2020;12120. [PMCID: PMC7279929 DOI: 10.1007/978-3-030-50120-4_9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
21
A Publicly Available, High Resolution, Unbiased CT Brain Template. INFORMATION PROCESSING AND MANAGEMENT OF UNCERTAINTY IN KNOWLEDGE-BASED SYSTEMS 2020. [PMCID: PMC7274757 DOI: 10.1007/978-3-030-50153-2_27] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
22
Muschelli J. Recommendations for Processing Head CT Data. Front Neuroinform 2019;13:61. [PMID: 31551745 PMCID: PMC6738271 DOI: 10.3389/fninf.2019.00061] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Accepted: 08/22/2019] [Indexed: 11/13/2022]  Open
23
Vandekar SN, Satterthwaite TD, Xia CH, Adebimpe A, Ruparel K, Gur RC, Gur RE, Shinohara RT. Robust spatial extent inference with a semiparametric bootstrap joint inference procedure. Biometrics 2019;75:1145-1155. [PMID: 31282994 DOI: 10.1111/biom.13114] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2018] [Accepted: 06/24/2019] [Indexed: 11/28/2022]
24
Antonelli L, Guarracino MR, Maddalena L, Sangiovanni M. Integrating imaging and omics data: A review. Biomed Signal Process Control 2019. [DOI: 10.1016/j.bspc.2019.04.032] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
25
Valcarcel AM, Linn KA, Khalid F, Vandekar SN, Tauhid S, Satterthwaite TD, Muschelli J, Martin ML, Bakshi R, Shinohara RT. A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis. Neuroimage Clin 2018;20:1211-1221. [PMID: 30391859 PMCID: PMC6224321 DOI: 10.1016/j.nicl.2018.10.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Revised: 08/26/2018] [Accepted: 10/15/2018] [Indexed: 11/25/2022]
26
Maag JLV. gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2. F1000Res 2018;7:1576. [PMID: 30467523 DOI: 10.12688/f1000research.16409.1] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/24/2018] [Indexed: 11/20/2022]  Open
27
Maag JLV. gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2. F1000Res 2018;7:1576. [PMID: 30467523 PMCID: PMC6208569 DOI: 10.12688/f1000research.16409.2] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 11/05/2018] [Indexed: 11/20/2022]  Open
28
Smirnova E, Ivanescu A, Bai J, Crainiceanu CM. A practical guide to big data. Stat Probab Lett 2018;136:25-29. [PMID: 29977100 PMCID: PMC6028050 DOI: 10.1016/j.spl.2018.02.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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