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For: Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM. WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database (Oxford) 2017;2017:3084697. [PMID: 28365742 PMCID: PMC5467579 DOI: 10.1093/database/bax025] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Accepted: 03/06/2017] [Indexed: 11/25/2022]
Number Cited by Other Article(s)
1
Seah BKB. Paying it forward: Crowdsourcing the harmonisation and linking of taxon names and biodiversity identifiers. Biodivers Data J 2023;11:e114076. [PMID: 38312332 PMCID: PMC10838036 DOI: 10.3897/bdj.11.e114076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 11/06/2023] [Indexed: 02/06/2024]  Open
2
Evenstein Sigalov S, Nachmias R. Investigating the potential of the semantic web for education: Exploring Wikidata as a learning platform. EDUCATION AND INFORMATION TECHNOLOGIES 2023:1-50. [PMID: 37361737 PMCID: PMC10009355 DOI: 10.1007/s10639-023-11664-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 02/07/2023] [Indexed: 06/28/2023]
3
Obregón Sierra Á. Inserción de metadatos de las bibliotecas españolas en Wikidata: un modelo de datos abiertos enlazados. REVISTA ESPANOLA DE DOCUMENTACION CIENTIFICA 2022. [DOI: 10.3989/redc.2022.3.1870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]  Open
4
Bundhoo E, Ghoorah AW, Jaufeerally-Fakim Y. TAGOPSIN: collating taxa-specific gene and protein functional and structural information. BMC Bioinformatics 2021;22:517. [PMID: 34688246 PMCID: PMC8541804 DOI: 10.1186/s12859-021-04429-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 10/06/2021] [Indexed: 11/25/2022]  Open
5
Ruiz-Saavedra S, García-González H, Arboleya S, Salazar N, Emilio Labra-Gayo J, Díaz I, Gueimonde M, González S, de los Reyes-Gavilán CG. Intestinal microbiota alterations by dietary exposure to chemicals from food cooking and processing. Application of data science for risk prediction. Comput Struct Biotechnol J 2021;19:1081-1091. [PMID: 33680352 PMCID: PMC7892627 DOI: 10.1016/j.csbj.2021.01.037] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 01/22/2021] [Accepted: 01/22/2021] [Indexed: 01/07/2023]  Open
6
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, Pico AR, Putman T, Riutta A, Queralt-Rosinach N, Schriml LM, Shafee T, Slenter D, Stephan R, Thornton K, Tsueng G, Tu R, Ul-Hasan S, Willighagen E, Wu C, Su AI. Wikidata as a knowledge graph for the life sciences. eLife 2020;9:e52614. [PMID: 32180547 PMCID: PMC7077981 DOI: 10.7554/elife.52614] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Accepted: 02/28/2020] [Indexed: 12/22/2022]  Open
7
Manske M, Böhme U, Püthe C, Berriman M. GeneDB and Wikidata. Wellcome Open Res 2019;4:114. [PMID: 31723674 PMCID: PMC6823904 DOI: 10.12688/wellcomeopenres.15355.2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/10/2019] [Indexed: 11/20/2022]  Open
8
Slenter DN, Kutmon M, Hanspers K, Riutta A, Windsor J, Nunes N, Mélius J, Cirillo E, Coort SL, Digles D, Ehrhart F, Giesbertz P, Kalafati M, Martens M, Miller R, Nishida K, Rieswijk L, Waagmeester A, Eijssen LMT, Evelo CT, Pico AR, Willighagen EL. WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. Nucleic Acids Res 2019;46:D661-D667. [PMID: 29136241 PMCID: PMC5753270 DOI: 10.1093/nar/gkx1064] [Citation(s) in RCA: 634] [Impact Index Per Article: 105.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 10/25/2017] [Indexed: 02/06/2023]  Open
9
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. ChlamBase: a curated model organism database for the Chlamydia research community. Database (Oxford) 2019;2019:baz041. [PMID: 30985891 PMCID: PMC6463448 DOI: 10.1093/database/baz041] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 02/22/2019] [Accepted: 03/07/2019] [Indexed: 02/06/2023]
10
Mignone A, Grand A, Fiori A, Medico E, Bertotti A. Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2019;2019:5529975. [PMID: 31287543 PMCID: PMC6615453 DOI: 10.1093/database/baz080] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 05/06/2019] [Accepted: 05/29/2019] [Indexed: 12/26/2022]
11
Combinatorial Interactions of Biotic and Abiotic Stresses in Plants and Their Molecular Mechanisms: Systems Biology Approach. Mol Biotechnol 2018;60:636-650. [PMID: 29943149 DOI: 10.1007/s12033-018-0100-9] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
12
Mietchen D, Wodak S, Wasik S, Szostak N, Dessimoz C. Submit a Topic Page to PLOS Computational Biology and Wikipedia. PLoS Comput Biol 2018;14:e1006137. [PMID: 29851950 PMCID: PMC5978877 DOI: 10.1371/journal.pcbi.1006137] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Stroehlein AJ, Young ND, Gasser RB. Improved strategy for the curation and classification of kinases, with broad applicability to other eukaryotic protein groups. Sci Rep 2018;8:6808. [PMID: 29717207 PMCID: PMC5931623 DOI: 10.1038/s41598-018-25020-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 04/12/2018] [Indexed: 12/20/2022]  Open
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