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Das Choudhury S, Guadagno CR, Bashyam S, Mazis A, Ewers BE, Samal A, Awada T. Stress phenotyping analysis leveraging autofluorescence image sequences with machine learning. FRONTIERS IN PLANT SCIENCE 2024; 15:1353110. [PMID: 38708393 PMCID: PMC11066247 DOI: 10.3389/fpls.2024.1353110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 03/14/2024] [Indexed: 05/07/2024]
Abstract
Background Autofluorescence-based imaging has the potential to non-destructively characterize the biochemical and physiological properties of plants regulated by genotypes using optical properties of the tissue. A comparative study of stress tolerant and stress susceptible genotypes of Brassica rapa with respect to newly introduced stress-based phenotypes using machine learning techniques will contribute to the significant advancement of autofluorescence-based plant phenotyping research. Methods Autofluorescence spectral images have been used to design a stress detection classifier with two classes, stressed and non-stressed, using machine learning algorithms. The benchmark dataset consisted of time-series image sequences from three Brassica rapa genotypes (CC, R500, and VT), extreme in their morphological and physiological traits captured at the high-throughput plant phenotyping facility at the University of Nebraska-Lincoln, USA. We developed a set of machine learning-based classification models to detect the percentage of stressed tissue derived from plant images and identified the best classifier. From the analysis of the autofluorescence images, two novel stress-based image phenotypes were computed to determine the temporal variation in stressed tissue under progressive drought across different genotypes, i.e., the average percentage stress and the moving average percentage stress. Results The study demonstrated that both the computed phenotypes consistently discriminated against stressed versus non-stressed tissue, with oilseed type (R500) being less prone to drought stress relative to the other two Brassica rapa genotypes (CC and VT). Conclusion Autofluorescence signals from the 365/400 nm excitation/emission combination were able to segregate genotypic variation during a progressive drought treatment under a controlled greenhouse environment, allowing for the exploration of other meaningful phenotypes using autofluorescence image sequences with significance in the context of plant science.
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Affiliation(s)
- Sruti Das Choudhury
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, United States
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE, United States
| | | | - Srinidhi Bashyam
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Anastasios Mazis
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Brent E. Ewers
- Department of Botany, University of Wyoming, Laramie, WY, United States
| | - Ashok Samal
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Tala Awada
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, United States
- Agricultural Research Division, University of Nebraska-Lincoln, Lincoln, NE, United States
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2
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Li X, Zheng X, Yadav N, Saha S, Salama ES, Li X, Wang L, Jeon BH. Rational management of the plant microbiome for the Second Green Revolution. PLANT COMMUNICATIONS 2024; 5:100812. [PMID: 38213028 PMCID: PMC11009158 DOI: 10.1016/j.xplc.2024.100812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 11/06/2023] [Accepted: 01/05/2024] [Indexed: 01/13/2024]
Abstract
The Green Revolution of the mid-20th century transformed agriculture worldwide and has resulted in environmental challenges. A new approach, the Second Green Revolution, seeks to enhance agricultural productivity while minimizing negative environmental impacts. Plant microbiomes play critical roles in plant growth and stress responses, and understanding plant-microbiome interactions is essential for developing sustainable agricultural practices that meet food security and safety challenges, which are among the United Nations Sustainable Development Goals. This review provides a comprehensive exploration of key deterministic processes crucial for developing microbiome management strategies, including the host effect, the facilitator effect, and microbe-microbe interactions. A hierarchical framework for plant microbiome modulation is proposed to bridge the gap between basic research and agricultural applications. This framework emphasizes three levels of modulation: single-strain, synthetic community, and in situ microbiome modulation. Overall, rational management of plant microbiomes has wide-ranging applications in agriculture and can potentially be a core technology for the Second Green Revolution.
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Affiliation(s)
- Xiaofang Li
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang 050021, China
| | - Xin Zheng
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang 050021, China
| | - Nikita Yadav
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Shouvik Saha
- Natural Resources Research Institute, University of Minnesota Duluth, Hermantown, MN 55811, USA; Department of Biotechnology, Brainware University, Barasat, Kolkata 700125, West Bengal, India
| | - El-Sayed Salama
- Department of Occupational and Environmental Health, School of Public Health, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Xiangkai Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Science, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Likun Wang
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang 050021, China.
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea.
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3
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Wang L, Chang C. Stomatal improvement for crop stress resistance. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1823-1833. [PMID: 38006251 DOI: 10.1093/jxb/erad477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 11/23/2023] [Indexed: 11/26/2023]
Abstract
The growth and yield of crop plants are threatened by environmental challenges such as water deficit, soil flooding, high salinity, and extreme temperatures, which are becoming increasingly severe under climate change. Stomata contribute greatly to plant adaptation to stressful environments by governing transpirational water loss and photosynthetic gas exchange. Increasing evidence has revealed that stomata formation is shaped by transcription factors, signaling peptides, and protein kinases, which could be exploited to improve crop stress resistance. The past decades have seen unprecedented progress in our understanding of stomata formation, but most of these advances have come from research on model plants. This review highlights recent research in stomata formation in crops and its multifaceted functions in abiotic stress tolerance. Current strategies, limitations, and future directions for harnessing stomatal development to improve crop stress resistance are discussed.
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Affiliation(s)
- Lu Wang
- College of Life Sciences, Qingdao University, Qingdao, Shandong, China
| | - Cheng Chang
- College of Life Sciences, Qingdao University, Qingdao, Shandong, China
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4
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Liu S, Zenda T, Tian Z, Huang Z. Metabolic pathways engineering for drought or/and heat tolerance in cereals. FRONTIERS IN PLANT SCIENCE 2023; 14:1111875. [PMID: 37810398 PMCID: PMC10557149 DOI: 10.3389/fpls.2023.1111875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 09/04/2023] [Indexed: 10/10/2023]
Abstract
Drought (D) and heat (H) are the two major abiotic stresses hindering cereal crop growth and productivity, either singly or in combination (D/+H), by imposing various negative impacts on plant physiological and biochemical processes. Consequently, this decreases overall cereal crop production and impacts global food availability and human nutrition. To achieve global food and nutrition security vis-a-vis global climate change, deployment of new strategies for enhancing crop D/+H stress tolerance and higher nutritive value in cereals is imperative. This depends on first gaining a mechanistic understanding of the mechanisms underlying D/+H stress response. Meanwhile, functional genomics has revealed several stress-related genes that have been successfully used in target-gene approach to generate stress-tolerant cultivars and sustain crop productivity over the past decades. However, the fast-changing climate, coupled with the complexity and multigenic nature of D/+H tolerance suggest that single-gene/trait targeting may not suffice in improving such traits. Hence, in this review-cum-perspective, we advance that targeted multiple-gene or metabolic pathway manipulation could represent the most effective approach for improving D/+H stress tolerance. First, we highlight the impact of D/+H stress on cereal crops, and the elaborate plant physiological and molecular responses. We then discuss how key primary metabolism- and secondary metabolism-related metabolic pathways, including carbon metabolism, starch metabolism, phenylpropanoid biosynthesis, γ-aminobutyric acid (GABA) biosynthesis, and phytohormone biosynthesis and signaling can be modified using modern molecular biotechnology approaches such as CRISPR-Cas9 system and synthetic biology (Synbio) to enhance D/+H tolerance in cereal crops. Understandably, several bottlenecks hinder metabolic pathway modification, including those related to feedback regulation, gene functional annotation, complex crosstalk between pathways, and metabolomics data and spatiotemporal gene expressions analyses. Nonetheless, recent advances in molecular biotechnology, genome-editing, single-cell metabolomics, and data annotation and analysis approaches, when integrated, offer unprecedented opportunities for pathway engineering for enhancing crop D/+H stress tolerance and improved yield. Especially, Synbio-based strategies will accelerate the development of climate resilient and nutrient-dense cereals, critical for achieving global food security and combating malnutrition.
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Affiliation(s)
- Songtao Liu
- Hebei Key Laboratory of Quality & Safety Analysis-Testing for Agro-Products and Food, Hebei North University, Zhangjiakou, China
| | - Tinashe Zenda
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
| | - Zaimin Tian
- Hebei Key Laboratory of Quality & Safety Analysis-Testing for Agro-Products and Food, Hebei North University, Zhangjiakou, China
| | - Zhihong Huang
- Hebei Key Laboratory of Quality & Safety Analysis-Testing for Agro-Products and Food, Hebei North University, Zhangjiakou, China
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5
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Jahan E, Sharwood RE, Tissue DT. Effects of leaf age during drought and recovery on photosynthesis, mesophyll conductance and leaf anatomy in wheat leaves. FRONTIERS IN PLANT SCIENCE 2023; 14:1091418. [PMID: 37409304 PMCID: PMC10318540 DOI: 10.3389/fpls.2023.1091418] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 04/28/2023] [Indexed: 07/07/2023]
Abstract
statement: Mesophyll conductance (g m) was negatively correlated with wheat leaf age but was positively correlated with the surface area of chloroplasts exposed to intercellular airspaces (S c). The rate of decline in photosynthetic rate and g m as leaves aged was slower for water-stressed than well-watered plants. Upon rewatering, the degree of recovery from water-stress depended on the age of the leaves, with the strongest recovery for mature leaves, rather than young or old leaves. Diffusion of CO2 from the intercellular airspaces to the site of Rubisco within C3 plant chloroplasts (gm) governs photosynthetic CO2 assimilation (A). However, variation in g m in response to environmental stress during leaf development remains poorly understood. Age-dependent changes in leaf ultrastructure and potential impacts on g m, A, and stomatal conductance to CO2 (g sc) were investigated for wheat (Triticum aestivum L.) in well-watered and water-stressed plants, and after recovery by re-watering of droughted plants. Significant reductions in A and g m were found as leaves aged. The oldest plants (15 days and 22 days) in water-stressed conditions showed higher A and gm compared to irrigated plants. The rate of decline in A and g m as leaves aged was slower for water-stressed compared to well-watered plants. When droughted plants were rewatered, the degree of recovery depended on the age of the leaves, but only for g m. The surface area of chloroplasts exposed to intercellular airspaces (S c) and the size of individual chloroplasts declined as leaves aged, resulting in a positive correlation between g m and S c. Leaf age significantly affected cell wall thickness (t cw), which was higher in old leaves compared to mature/young leaves. Greater knowledge of leaf anatomical traits associated with g m partially explained changes in physiology with leaf age and plant water status, which in turn should create more possibilities for improving photosynthesis using breeding/biotechnological strategies.
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Affiliation(s)
- Eisrat Jahan
- School of Life and Environmental Sciences, The University of Sydney, Camden, NSW, Australia
| | - Robert Edward Sharwood
- Hawkesbury Institute for the Environment, Western Sydney University, Hawksbury, Penrith, NSW, Australia
- School of Science, Western Sydney University, Hawksbury, Penrith, NSW, Australia
| | - David T. Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Hawksbury, Penrith, NSW, Australia
- Global Centre for Land-Based Innovation, Western Sydney University, Hawksbury, Penrith, NSW, Australia
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6
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Zhou Y, Gunn LH, Birch R, Andersson I, Whitney SM. Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth. NATURE PLANTS 2023; 9:978-986. [PMID: 37291398 DOI: 10.1038/s41477-023-01436-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Accepted: 05/10/2023] [Indexed: 06/10/2023]
Abstract
Improving the carboxylation properties of Rubisco has primarily arisen from unforeseen amino acid substitutions remote from the catalytic site. The unpredictability has frustrated rational design efforts to enhance plant Rubisco towards the prized growth-enhancing carboxylation properties of red algae Griffithsia monilis GmRubisco. To address this, we determined the crystal structure of GmRubisco to 1.7 Å. Three structurally divergent domains were identified relative to the red-type bacterial Rhodobacter sphaeroides RsRubisco that, unlike GmRubisco, are expressed in Escherichia coli and plants. Kinetic comparison of 11 RsRubisco chimaeras revealed that incorporating C329A and A332V substitutions from GmRubisco Loop 6 (corresponding to plant residues 328 and 331) into RsRubisco increased the carboxylation rate (kcatc) by 60%, the carboxylation efficiency in air by 22% and the CO2/O2 specificity (Sc/o) by 7%. Plastome transformation of this RsRubisco Loop 6 mutant into tobacco enhanced photosynthesis and growth up to twofold over tobacco producing wild-type RsRubisco. Our findings demonstrate the utility of RsRubisco for the identification and in planta testing of amino acid grafts from algal Rubisco that can enhance the enzyme's carboxylase potential.
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Affiliation(s)
- Yu Zhou
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Laura H Gunn
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
| | - Rosemary Birch
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Inger Andersson
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
- Norwegian College of Fisheries Sciences, UiT Arctic University of Norway, Tromsø, Norway
- Institute of Biotechnology, Academy of Sciences of the Czech Republic, Biocev, Vestec, Czech Republic
| | - Spencer M Whitney
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.
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7
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Wu A. Modelling plants across scales of biological organisation for guiding crop improvement. FUNCTIONAL PLANT BIOLOGY : FPB 2023; 50:435-454. [PMID: 37105931 DOI: 10.1071/fp23010] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 04/06/2023] [Indexed: 06/07/2023]
Abstract
Grain yield improvement in globally important staple crops is critical in the coming decades if production is to keep pace with growing demand; so there is increasing interest in understanding and manipulating plant growth and developmental traits for better crop productivity. However, this is confounded by complex cross-scale feedback regulations and a limited ability to evaluate the consequences of manipulation on crop production. Plant/crop modelling could hold the key to deepening our understanding of dynamic trait-crop-environment interactions and predictive capabilities for supporting genetic manipulation. Using photosynthesis and crop growth as an example, this review summarises past and present experimental and modelling work, bringing about a model-guided crop improvement thrust, encompassing research into: (1) advancing cross-scale plant/crop modelling that connects across biological scales of organisation using a trait dissection-integration modelling principle; (2) improving the reliability of predicted molecular-trait-crop-environment system dynamics with experimental validation; and (3) innovative model application in synergy with cross-scale experimentation to evaluate G×M×E and predict yield outcomes of genetic intervention (or lack of it) for strategising further molecular and breeding efforts. The possible future roles of cross-scale plant/crop modelling in maximising crop improvement are discussed.
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Affiliation(s)
- Alex Wu
- Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, Qld, Australia
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8
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Gao JG, Zhu XG. The legacies of the "Father of Hybrid Rice" and the seven representative achievements of Chinese rice research: A pioneering perspective towards sustainable development. FRONTIERS IN PLANT SCIENCE 2023; 14:1087768. [PMID: 37025150 PMCID: PMC10070957 DOI: 10.3389/fpls.2023.1087768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 03/13/2023] [Indexed: 06/19/2023]
Abstract
The "Father of Hybrid Rice", Yuan Longping, created high-yield hybrid rice that can feed tens of millions of people annually. The research achievements of Yuan and his team on low cadmium-accumulating rice and sea rice, in addition to hybrid rice, as well as those of a large number of Chinese scientists engaged in rice research in other six areas, including the rice genome, purple endosperm rice, de novo domestication of tetraploid rice, perennial rice, rice blast disease, and key genes for high nitrogen use efficiency, play an important role in promoting the realization of the United Nations Sustainable Development Goals 2 and 12. The purpose of this review is not to elaborate on the details of each research, but to innovatively summarize the significance and inspiration of these achievements to ensure global food security and achieve sustainable agriculture. In the future, cultivating new rice varieties through modern biotechnology, such as genome editing, will not only reduce hunger, but potentially reduce human-land conflicts, improve the environment, and mitigate climate change.
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Affiliation(s)
- Jian-Guo Gao
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, China
- Department of Ecology, Peking University, Beijing, China
| | - Xin-Guang Zhu
- National Key Laboratory for Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China
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9
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High yield with efficient nutrient use: Opportunities and challenges for wheat. iScience 2023; 26:106135. [PMID: 36994185 PMCID: PMC10040891 DOI: 10.1016/j.isci.2023.106135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/18/2022] [Accepted: 01/31/2023] [Indexed: 02/24/2023] Open
Abstract
Understanding yield formation and nutrient use are essential for wheat breeding and management. This study combined 76 field trials and literature data with scenario analysis to explore the potential of high yield, nutritional quality, and nutrient efficiency in wheat production in China. Currently, the high yield is achieved with high grain N and S but low Zn concentration, and low N efficiency. To improve the grain yield by 10% in 2035, the grain number needs to increase from 31.8 to 38.5 grain spike-1, and the harvest index from 46.6% to 48.6%, with a reduction in spike number by 10%, when the grain N, Fe, Zn, and S, the nutrient removal efficiency, and the fertilizer efficiency of N, P, and K could all be increased. Our study provides strategies and ideas for promoting wheat production with high nutritional quality and high nutrient efficiency in China and other countries.
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10
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Buck S, Rhodes T, Gionfriddo M, Skinner T, Yuan D, Birch R, Kapralov MV, Whitney SM. Escherichia coli expressing chloroplast chaperones as a proxy to test heterologous Rubisco production in leaves. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:664-676. [PMID: 36322613 DOI: 10.1093/jxb/erac435] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 10/31/2022] [Indexed: 06/16/2023]
Abstract
Rubisco is a fundamental enzyme in photosynthesis and therefore for life. Efforts to improve plant Rubisco performance have been hindered by the enzymes' complex chloroplast biogenesis requirements. New Synbio approaches, however, now allow the production of some plant Rubisco isoforms in Escherichia coli. While this enhances opportunities for catalytic improvement, there remain limitations in the utility of the expression system. Here we generate, optimize, and test a robust Golden Gate cloning E. coli expression system incorporating the protein folding machinery of tobacco chloroplasts. By comparing the expression of different plant Rubiscos in both E. coli and plastome-transformed tobacco, we show that the E. coli expression system can accurately predict high level Rubisco production in chloroplasts but poorly forecasts the biogenesis potential of isoforms with impaired production in planta. We reveal that heterologous Rubisco production in E. coli and tobacco plastids poorly correlates with Rubisco large subunit phylogeny. Our findings highlight the need to fully understand the factors governing Rubisco biogenesis if we are to deliver an efficient, low-cost screening tool that can accurately emulate chloroplast expression.
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Affiliation(s)
- Sally Buck
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
| | - Tim Rhodes
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
| | - Matteo Gionfriddo
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
| | - Tanya Skinner
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
| | - Ding Yuan
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
| | - Rosemary Birch
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
| | - Maxim V Kapralov
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, UK
| | - Spencer M Whitney
- ARC Centre of Excellence in Translational Photosynthesis, Australian National University, Canberra 2000, Australia
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Kumar A, Pandey SS, Kumar D, Tripathi BN. Genetic manipulation of photosynthesis to enhance crop productivity under changing environmental conditions. PHOTOSYNTHESIS RESEARCH 2023; 155:1-21. [PMID: 36319887 DOI: 10.1007/s11120-022-00977-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
Current global agricultural production needs to be increased to feed the unconstrained growing population. The changing climatic condition due to anthropogenic activities also makes the conditions more challenging to meet the required crop productivity in the future. The increase in crop productivity in the post green revolution era most likely became stagnant, or no major enhancement in crop productivity observed. In this review article, we discuss the emerging approaches for the enhancement of crop production along with dealing to the future climate changes like rise in temperature, increase in precipitation and decrease in snow and ice level, etc. At first, we discuss the efforts made for the genetic manipulation of chlorophyll metabolism, antenna engineering, electron transport chain, carbon fixation, and photorespiratory processes to enhance the photosynthesis of plants and to develop tolerance in plants to cope with changing environmental conditions. The application of CRISPR to enhance the crop productivity and develop abiotic stress-tolerant plants to face the current changing climatic conditions is also discussed.
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Affiliation(s)
- Abhishek Kumar
- Biotechnology Division, Council of Scientific and Industrial Research (CSIR)-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| | - Shiv Shanker Pandey
- Biotechnology Division, Council of Scientific and Industrial Research (CSIR)-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.
| | - Dhananjay Kumar
- Laboratory of Algal Biotechnology, Department of Botany and Microbiology, School of Life Sciences, H.N.B. Garhwal University, Srinagar, Garhwal, 246 174, India.
| | - Bhumi Nath Tripathi
- Department of Biotechnology, Indira Gandhi National Tribal University, Amarkantak, 484886, India
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Adler L, Díaz-Ramos A, Mao Y, Pukacz KR, Fei C, McCormick AJ. New horizons for building pyrenoid-based CO2-concentrating mechanisms in plants to improve yields. PLANT PHYSIOLOGY 2022; 190:1609-1627. [PMID: 35961043 PMCID: PMC9614477 DOI: 10.1093/plphys/kiac373] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 07/06/2022] [Indexed: 05/06/2023]
Abstract
Many photosynthetic species have evolved CO2-concentrating mechanisms (CCMs) to improve the efficiency of CO2 assimilation by Rubisco and reduce the negative impacts of photorespiration. However, the majority of plants (i.e. C3 plants) lack an active CCM. Thus, engineering a functional heterologous CCM into important C3 crops, such as rice (Oryza sativa) and wheat (Triticum aestivum), has become a key strategic ambition to enhance yield potential. Here, we review recent advances in our understanding of the pyrenoid-based CCM in the model green alga Chlamydomonas reinhardtii and engineering progress in C3 plants. We also discuss recent modeling work that has provided insights into the potential advantages of Rubisco condensation within the pyrenoid and the energetic costs of the Chlamydomonas CCM, which, together, will help to better guide future engineering approaches. Key findings include the potential benefits of Rubisco condensation for carboxylation efficiency and the need for a diffusional barrier around the pyrenoid matrix. We discuss a minimal set of components for the CCM to function and that active bicarbonate import into the chloroplast stroma may not be necessary for a functional pyrenoid-based CCM in planta. Thus, the roadmap for building a pyrenoid-based CCM into plant chloroplasts to enhance the efficiency of photosynthesis now appears clearer with new challenges and opportunities.
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Affiliation(s)
| | | | - Yuwei Mao
- Institute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK
| | - Krzysztof Robin Pukacz
- Institute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK
| | - Chenyi Fei
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544, USA
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13
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Metabolic, physiological and anatomical responses of soybean plants under water deficit and high temperature condition. Sci Rep 2022; 12:16467. [PMID: 36183028 PMCID: PMC9526742 DOI: 10.1038/s41598-022-21035-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Accepted: 09/22/2022] [Indexed: 11/30/2022] Open
Abstract
Water deficit (WD) combined with high temperature (HT) is the major factor limiting agriculture worldwide, and it is predicted to become worse according to the current climate change scenario. It is thus important to understand how current cultivated crops respond to these stress conditions. Here we investigated how four soybean cultivars respond to WD and HT isolated or in combination at metabolic, physiological, and anatomical levels. The WD + HT increased the level of stress in soybean plants when compared to plants under well-watered (WW), WD, or HT conditions. WD + HT exacerbates the increases in ascorbate peroxidase activity, which was associated with the greater photosynthetic rate in two cultivars under WD + HT. The metabolic responses to WD + HT diverge substantially from plants under WW, WD, or HT conditions. Myo-inositol and maltose were identified as WD + HT biomarkers and were connected to subnetworks composed of catalase, amino acids, and both root and leaf osmotic potentials. Correlation-based network analyses highlight that the network heterogeneity increased and a higher integration among metabolic, physiological, and morphological nodes is observed under stress conditions. Beyond unveiling biochemical and metabolic WD + HT biomarkers, our results collectively highlight that the mechanisms behind the acclimation to WD + HT cannot be understood by investigating WD or HT stress separately.
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14
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OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield. Int J Mol Sci 2022; 23:ijms231810795. [PMID: 36142708 PMCID: PMC9503026 DOI: 10.3390/ijms231810795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 09/06/2022] [Accepted: 09/08/2022] [Indexed: 11/30/2022] Open
Abstract
The OsNRT2.3a and OsNRT2.3b isoforms play important roles in the uptake and transport of nitrate during rice growth. However, it is unclear which cis-acting element controls the transcription of OsNRT2.3 into these specific isoforms. In this study, we used a yeast one-hybrid assay to obtain the TATA-box binding protein OsTBP2.1, which binds to the TATA-box of OsNRT2.3, and verified its important role through transient expression and RNA-seq. We found that the TATA-box of OsNRT2.3 mutants and binding protein OsTBP2.1 together increased the transcription ratio of OsNRT2.3b to OsNRT2.3a. The overexpression of OsTBP2.1 promoted nitrogen uptake and increased rice yield compared with the wild-type; however, the OsTBP2.1 T-DNA mutant lines exhibited the opposite trend. Detailed analyses demonstrated that the TATA-box was the key cis-regulatory element for OsNRT2.3 to be transcribed into OsNRT2.3a and OsNRT2.3b. Additionally, this key cis-regulatory element, together with the binding protein OsTBP2.1, promoted the development of rice and increased grain yield.
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15
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Zannini E, Sahin AW, Arendt EK. Resistant Protein: Forms and Functions. Foods 2022; 11:foods11182759. [PMID: 36140887 PMCID: PMC9498059 DOI: 10.3390/foods11182759] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 08/30/2022] [Accepted: 09/02/2022] [Indexed: 11/16/2022] Open
Abstract
Several global health risks are related to our dietary lifestyle. As a consequence of the overconsumption of ultra-processed and highly digestible protein (150–200% of the recommended value), excess dietary proteins reach the colon, are hydrolysed to peptides and amino acids by bacterial proteases and fermented to various potentially toxic end products. A diet reformulation strategy with reduced protein content in food products appears to be the most effective approach. A potential approach to this challenge is to reduce food digestibility by introducing resistant protein into the diet that could positively influence human health and gut microbiome functionality. Resistant protein is a dietary constituent not hydrolysed by digestive enzymes or absorbed in the human small intestine. The chemical conformation and the amino acid composition strictly influence its structural stability and resistance to in vivo proteolysis and denaturation. Responding to the important gap in our knowledge regarding the digestibility performance of alternative proteins, we hypothesise that resistant proteins can beneficially alter food functionality via their role in improving metabolic properties and health benefits in human nutrition, similar to fibres and resistant starches. A multidisciplinary investigation of resistant protein will generate tremendous scientific impact for other interlinked societal, economic, technological and health and wellbeing aspects of human life.
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Affiliation(s)
- Emanuele Zannini
- School of Food and Nutritional Sciences, University College Cork, College Road, T12 K8AF Cork, Ireland
- Correspondence: ; Tel.: +353-21-490-2388; Fax: +353-21-427-0213
| | - Aylin W. Sahin
- School of Food and Nutritional Sciences, University College Cork, College Road, T12 K8AF Cork, Ireland
| | - Elke K. Arendt
- School of Food and Nutritional Sciences, University College Cork, College Road, T12 K8AF Cork, Ireland
- APC Microbiome Institute, T12 K8AF Cork, Ireland
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16
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Arbuscular mycorrhizae: natural modulators of plant–nutrient relation and growth in stressful environments. Arch Microbiol 2022; 204:264. [DOI: 10.1007/s00203-022-02882-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 03/20/2022] [Accepted: 03/28/2022] [Indexed: 11/02/2022]
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17
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Robles-Zazueta CA, Pinto F, Molero G, Foulkes MJ, Reynolds MP, Murchie EH. Prediction of Photosynthetic, Biophysical, and Biochemical Traits in Wheat Canopies to Reduce the Phenotyping Bottleneck. FRONTIERS IN PLANT SCIENCE 2022; 13:828451. [PMID: 35481146 PMCID: PMC9036448 DOI: 10.3389/fpls.2022.828451] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 01/25/2022] [Indexed: 06/14/2023]
Abstract
To achieve food security, it is necessary to increase crop radiation use efficiency (RUE) and yield through the enhancement of canopy photosynthesis to increase the availability of assimilates for the grain, but its study in the field is constrained by low throughput and the lack of integrative measurements at canopy level. In this study, partial least squares regression (PLSR) was used with high-throughput phenotyping (HTP) data in spring wheat to build predictive models of photosynthetic, biophysical, and biochemical traits for the top, middle, and bottom layers of wheat canopies. The combined layer model predictions performed better than individual layer predictions with a significance as follows for photosynthesis R 2 = 0.48, RMSE = 5.24 μmol m-2 s-1 and stomatal conductance: R 2 = 0.36, RMSE = 0.14 mol m-2 s-1. The predictions of these traits from PLSR models upscaled to canopy level compared to field observations were statistically significant at initiation of booting (R 2 = 0.3, p < 0.05; R 2 = 0.29, p < 0.05) and at 7 days after anthesis (R 2 = 0.15, p < 0.05; R 2 = 0.65, p < 0.001). Using HTP allowed us to increase phenotyping capacity 30-fold compared to conventional phenotyping methods. This approach can be adapted to screen breeding progeny and genetic resources for RUE and to improve our understanding of wheat physiology by adding different layers of the canopy to physiological modeling.
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Affiliation(s)
- Carlos A. Robles-Zazueta
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire, United Kingdom
- Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico
| | - Francisco Pinto
- Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico
| | - Gemma Molero
- Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico
| | - M. John Foulkes
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire, United Kingdom
| | - Matthew P. Reynolds
- Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico
| | - Erik H. Murchie
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire, United Kingdom
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18
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Ganguly DR, Hickey LT, Crisp PA. Harnessing genetic variation at regulatory regions to fine-tune traits for climate-resilient crops. MOLECULAR PLANT 2022; 15:222-224. [PMID: 34968735 DOI: 10.1016/j.molp.2021.12.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 12/21/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Affiliation(s)
- Diep R Ganguly
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Canberra, ACT 2601, Australia; CSIRO Synthetic Biology Future Science Platform, Canberra, ACT, Australia
| | - Lee T Hickey
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Peter A Crisp
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane, QLD 4072, Australia.
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19
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Yan Y, Hou P, Duan F, Niu L, Dai T, Wang K, Zhao M, Li S, Zhou W. Improving photosynthesis to increase grain yield potential: an analysis of maize hybrids released in different years in China. PHOTOSYNTHESIS RESEARCH 2021; 150:295-311. [PMID: 34032983 PMCID: PMC8556214 DOI: 10.1007/s11120-021-00847-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 05/11/2021] [Indexed: 05/07/2023]
Abstract
In this work, we sought to understand how breeding has affected photosynthesis and to identify key photosynthetic indices that are important for increasing maize yield in the field. Our 2-year (2017-2018) field experiment used five high-yielding hybrid maize cultivars (generated in the 1970s, 2000s, and 2010s) and was conducted in the Xinjiang Autonomous Region of China. We investigated the effects of planting density on maize grain yield, photosynthetic parameters, respiration, and chlorophyll content, under three planting density regimens: 75,000, 105,000, and 135,000 plants ha-1. Our results showed that increasing planting density to the medium level (105,000 plants ha-1) significantly increased grain yield (Y) up to 20.32% compared to the low level (75,000 plants ha-1). However, further increasing planting density to 135,000 plants ha-1 did not lead to an additional increase in yield, with some cultivars actually exhibiting an opposite trend. Interestingly, no significant changes in photosynthetic rate, dark respiration, stomatal density, and aperture were observed upon increasing planting density. Moreover, our experiments revealed a positive correlation between grain yield and the net photosynthetic rate (Pn) upon the hybrid release year. Compared to other cultivars, the higher grain yield obtained in DH618 resulted from a higher 1000-kernel weight (TKW), which can be explained by a longer photosynthetic duration, a higher chlorophyll content, and a lower ratio of chlorophyll a/b. Moreover, we found that a higher leaf area per plant and the leaf area index (HI) do not necessarily result in an improvement in maize yield. Taken together, we demonstrated that higher photosynthetic capacity, longer photosynthetic duration, suitable LAI, and higher chlorophyll content with lower chlorophyll a/b ratio are important factors for obtaining high-yielding maize cultivars and can be used for the improvement of maize crop yield.
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Affiliation(s)
- Yanyan Yan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- Key Laboratory of Crop Physiology Ecology and Production Management of Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Peng Hou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Fengying Duan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Li Niu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Tingbo Dai
- Key Laboratory of Crop Physiology Ecology and Production Management of Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Keru Wang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Ming Zhao
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Shaokun Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Wenbin Zhou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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20
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Yan Y, Hou P, Duan F, Niu L, Dai T, Wang K, Zhao M, Li S, Zhou W. Improving photosynthesis to increase grain yield potential: an analysis of maize hybrids released in different years in China. PHOTOSYNTHESIS RESEARCH 2021. [PMID: 34032983 DOI: 10.100/s11120-021-00847-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
In this work, we sought to understand how breeding has affected photosynthesis and to identify key photosynthetic indices that are important for increasing maize yield in the field. Our 2-year (2017-2018) field experiment used five high-yielding hybrid maize cultivars (generated in the 1970s, 2000s, and 2010s) and was conducted in the Xinjiang Autonomous Region of China. We investigated the effects of planting density on maize grain yield, photosynthetic parameters, respiration, and chlorophyll content, under three planting density regimens: 75,000, 105,000, and 135,000 plants ha-1. Our results showed that increasing planting density to the medium level (105,000 plants ha-1) significantly increased grain yield (Y) up to 20.32% compared to the low level (75,000 plants ha-1). However, further increasing planting density to 135,000 plants ha-1 did not lead to an additional increase in yield, with some cultivars actually exhibiting an opposite trend. Interestingly, no significant changes in photosynthetic rate, dark respiration, stomatal density, and aperture were observed upon increasing planting density. Moreover, our experiments revealed a positive correlation between grain yield and the net photosynthetic rate (Pn) upon the hybrid release year. Compared to other cultivars, the higher grain yield obtained in DH618 resulted from a higher 1000-kernel weight (TKW), which can be explained by a longer photosynthetic duration, a higher chlorophyll content, and a lower ratio of chlorophyll a/b. Moreover, we found that a higher leaf area per plant and the leaf area index (HI) do not necessarily result in an improvement in maize yield. Taken together, we demonstrated that higher photosynthetic capacity, longer photosynthetic duration, suitable LAI, and higher chlorophyll content with lower chlorophyll a/b ratio are important factors for obtaining high-yielding maize cultivars and can be used for the improvement of maize crop yield.
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Affiliation(s)
- Yanyan Yan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- Key Laboratory of Crop Physiology Ecology and Production Management of Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Peng Hou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Fengying Duan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Li Niu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Tingbo Dai
- Key Laboratory of Crop Physiology Ecology and Production Management of Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Keru Wang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Ming Zhao
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Shaokun Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Wenbin Zhou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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21
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Zenda T, Liu S, Dong A, Li J, Wang Y, Liu X, Wang N, Duan H. Omics-Facilitated Crop Improvement for Climate Resilience and Superior Nutritive Value. FRONTIERS IN PLANT SCIENCE 2021; 12:774994. [PMID: 34925418 PMCID: PMC8672198 DOI: 10.3389/fpls.2021.774994] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 11/08/2021] [Indexed: 05/17/2023]
Abstract
Novel crop improvement approaches, including those that facilitate for the exploitation of crop wild relatives and underutilized species harboring the much-needed natural allelic variation are indispensable if we are to develop climate-smart crops with enhanced abiotic and biotic stress tolerance, higher nutritive value, and superior traits of agronomic importance. Top among these approaches are the "omics" technologies, including genomics, transcriptomics, proteomics, metabolomics, phenomics, and their integration, whose deployment has been vital in revealing several key genes, proteins and metabolic pathways underlying numerous traits of agronomic importance, and aiding marker-assisted breeding in major crop species. Here, citing several relevant examples, we appraise our understanding on the recent developments in omics technologies and how they are driving our quest to breed climate resilient crops. Large-scale genome resequencing, pan-genomes and genome-wide association studies are aiding the identification and analysis of species-level genome variations, whilst RNA-sequencing driven transcriptomics has provided unprecedented opportunities for conducting crop abiotic and biotic stress response studies. Meanwhile, single cell transcriptomics is slowly becoming an indispensable tool for decoding cell-specific stress responses, although several technical and experimental design challenges still need to be resolved. Additionally, the refinement of the conventional techniques and advent of modern, high-resolution proteomics technologies necessitated a gradual shift from the general descriptive studies of plant protein abundances to large scale analysis of protein-metabolite interactions. Especially, metabolomics is currently receiving special attention, owing to the role metabolites play as metabolic intermediates and close links to the phenotypic expression. Further, high throughput phenomics applications are driving the targeting of new research domains such as root system architecture analysis, and exploration of plant root-associated microbes for improved crop health and climate resilience. Overall, coupling these multi-omics technologies to modern plant breeding and genetic engineering methods ensures an all-encompassing approach to developing nutritionally-rich and climate-smart crops whose productivity can sustainably and sufficiently meet the current and future food, nutrition and energy demands.
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Affiliation(s)
- Tinashe Zenda
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
- Department of Crop Science, Faculty of Agriculture and Environmental Science, Bindura University of Science Education, Bindura, Zimbabwe
| | - Songtao Liu
- Academy of Agriculture and Forestry Sciences, Hebei North University, Zhangjiakou, China
| | - Anyi Dong
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Jiao Li
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Yafei Wang
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Xinyue Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Nan Wang
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Huijun Duan
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
- Department of Crop Genetics and Breeding, College of Agronomy, Hebei Agricultural University, Baoding, China
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22
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Sott MK, Nascimento LDS, Foguesatto CR, Furstenau LB, Faccin K, Zawislak PA, Mellado B, Kong JD, Bragazzi NL. A Bibliometric Network Analysis of Recent Publications on Digital Agriculture to Depict Strategic Themes and Evolution Structure. SENSORS 2021; 21:s21237889. [PMID: 34883903 PMCID: PMC8659853 DOI: 10.3390/s21237889] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 11/17/2021] [Accepted: 11/24/2021] [Indexed: 12/21/2022]
Abstract
The agriculture sector is one of the backbones of many countries’ economies. Its processes have been changing to enable technology adoption to increase productivity, quality, and sustainable development. In this research, we present a scientific mapping of the adoption of precision techniques and breakthrough technologies in agriculture, so-called Digital Agriculture. To do this, we used 4694 documents from the Web of Science database to perform a Bibliometric Performance and Network Analysis of the literature using SciMAT software with the support of the PICOC protocol. Our findings presented 22 strategic themes related to Digital Agriculture, such as Internet of Things (IoT), Unmanned Aerial Vehicles (UAV) and Climate-smart Agriculture (CSA), among others. The thematic network structure of the nine most important clusters (motor themes) was presented and an in-depth discussion was performed. The thematic evolution map provides a broad perspective of how the field has evolved over time from 1994 to 2020. In addition, our results discuss the main challenges and opportunities for research and practice in the field of study. Our findings provide a comprehensive overview of the main themes related to Digital Agriculture. These results show the main subjects analyzed on this topic and provide a basis for insights for future research.
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Affiliation(s)
- Michele Kremer Sott
- Business School, Unisinos University, Porto Alegre 91330-002, RS, Brazil; (C.R.F.); (K.F.)
- Correspondence: (M.K.S.); (N.L.B.)
| | - Leandro da Silva Nascimento
- School of Management, Federal University of Rio Grande do Sul, Porto Alegre 90040-060, RS, Brazil; (L.d.S.N.); (P.A.Z.)
| | | | - Leonardo B. Furstenau
- Department of Industrial Engineering, Federal University of Rio Grande do Sul, Porto Alegre 90040-060, RS, Brazil;
| | - Kadígia Faccin
- Business School, Unisinos University, Porto Alegre 91330-002, RS, Brazil; (C.R.F.); (K.F.)
| | - Paulo Antônio Zawislak
- School of Management, Federal University of Rio Grande do Sul, Porto Alegre 90040-060, RS, Brazil; (L.d.S.N.); (P.A.Z.)
| | - Bruce Mellado
- School of Physics and Institute for Collider Particle Physics, University of the Witwatersrand, Johannesburg 2050, South Africa;
| | - Jude Dzevela Kong
- Department of Mathematics and Statistics, York University, Toronto, ON M3J 1P3, Canada;
| | - Nicola Luigi Bragazzi
- Department of Mathematics and Statistics, York University, Toronto, ON M3J 1P3, Canada;
- Correspondence: (M.K.S.); (N.L.B.)
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Poutanen KS, Kårlund AO, Gómez-Gallego C, Johansson DP, Scheers NM, Marklinder IM, Eriksen AK, Silventoinen PC, Nordlund E, Sozer N, Hanhineva KJ, Kolehmainen M, Landberg R. Grains - a major source of sustainable protein for health. Nutr Rev 2021; 80:1648-1663. [PMID: 34741520 PMCID: PMC9086769 DOI: 10.1093/nutrit/nuab084] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Cereal grains are the main dietary source of energy, carbohydrates, and plant proteins world-wide. Currently, only 41% of grains are used for human consumption, and up to 35% are used for animal feed. Cereals have been overlooked as a source of environmentally sustainable and healthy plant proteins and could play a major role in transitioning towards a more sustainable food system for healthy diets. Cereal plant proteins are of good nutritional quality, but lysine is often the limiting amino acid. When consumed as whole grains, cereals provide health-protecting components such as dietary fiber and phytochemicals. Shifting grain use from feed to traditional foods and conceptually new foods and ingredients could improve protein security and alleviate climate change. Rapid development of new grain-based food ingredients and use of grains in new food contexts, such as dairy replacements and meat analogues, could accelerate the transition. This review discusses recent developments and outlines future perspectives for cereal grain use.
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Affiliation(s)
| | - Anna O Kårlund
- Faculty of Health Sciences, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
| | - Carlos Gómez-Gallego
- Faculty of Health Sciences, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
| | - Daniel P Johansson
- Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Nathalie M Scheers
- Division of Food and Nutrition Science, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Ingela M Marklinder
- Department of Food Studies, Nutrition and Dietetics, Uppsala University, Uppsala, Sweden. A.K. Eriksen is with the Unit of Diet, Genes and Environment, Danish Cancer Society Research Center, Copenhagen, Denmark
| | - Anne K Eriksen
- Department of Food Studies, Nutrition and Dietetics, Uppsala University, Uppsala, Sweden. A.K. Eriksen is with the Unit of Diet, Genes and Environment, Danish Cancer Society Research Center, Copenhagen, Denmark
| | | | | | - Nesli Sozer
- VTT Technical Research Centre of Finland, Espoo, Finland
| | - Kati J Hanhineva
- Faculty of Health Sciences, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland.,Division of Food and Nutrition Science, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.,Food Chemistry and Food Development Unit, Department of Biochemistry, University of Turku, Turku, Finland
| | - Marjukka Kolehmainen
- Faculty of Health Sciences, Institute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland
| | - Rikard Landberg
- Division of Food and Nutrition Science, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
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24
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de Sousa T, Ribeiro M, Sabença C, Igrejas G. The 10,000-Year Success Story of Wheat! Foods 2021; 10:2124. [PMID: 34574233 PMCID: PMC8467621 DOI: 10.3390/foods10092124] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2021] [Revised: 09/04/2021] [Accepted: 09/06/2021] [Indexed: 12/13/2022] Open
Abstract
Wheat is one of the most important cereal crops in the world as it is used in the production of a diverse range of traditional and modern processed foods. The ancient varieties einkorn, emmer, and spelt not only played an important role as a source of food but became the ancestors of the modern varieties currently grown worldwide. Hexaploid wheat (Triticum aestivum L.) and tetraploid wheat (Triticum durum Desf.) now account for around 95% and 5% of the world production, respectively. The success of this cereal is inextricably associated with the capacity of its grain proteins, the gluten, to form a viscoelastic dough that allows the transformation of wheat flour into a wide variety of staple forms of food in the human diet. This review aims to give a holistic view of the temporal and proteogenomic evolution of wheat from its domestication to the massively produced high-yield crop of our day.
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Affiliation(s)
- Telma de Sousa
- Department of Genetics and Biotechnology, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (T.d.S.); (M.R.); (C.S.)
- Functional Genomics and Proteomics Unity, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
- LAQV-REQUIMTE, Faculty of Science and Technology, University Nova of Lisbon, 2825-149 Lisbon, Caparica, Portugal
| | - Miguel Ribeiro
- Department of Genetics and Biotechnology, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (T.d.S.); (M.R.); (C.S.)
- Functional Genomics and Proteomics Unity, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
- LAQV-REQUIMTE, Faculty of Science and Technology, University Nova of Lisbon, 2825-149 Lisbon, Caparica, Portugal
| | - Carolina Sabença
- Department of Genetics and Biotechnology, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (T.d.S.); (M.R.); (C.S.)
- Functional Genomics and Proteomics Unity, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
- LAQV-REQUIMTE, Faculty of Science and Technology, University Nova of Lisbon, 2825-149 Lisbon, Caparica, Portugal
| | - Gilberto Igrejas
- Department of Genetics and Biotechnology, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal; (T.d.S.); (M.R.); (C.S.)
- Functional Genomics and Proteomics Unity, University of Trás-os-Montes and Alto Douro, 5000-801 Vila Real, Portugal
- LAQV-REQUIMTE, Faculty of Science and Technology, University Nova of Lisbon, 2825-149 Lisbon, Caparica, Portugal
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25
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Iqbal WA, Miller IG, Moore RL, Hope IJ, Cowan-Turner D, Kapralov MV. Rubisco substitutions predicted to enhance crop performance through carbon uptake modelling. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:6066-6075. [PMID: 34115846 PMCID: PMC8411856 DOI: 10.1093/jxb/erab278] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 06/09/2021] [Indexed: 05/03/2023]
Abstract
Improving the performance of the CO2-fixing enzyme Rubisco is among the targets for increasing crop yields. Here, Earth system model (ESM) representations of canopy C3 and C4 photosynthesis were combined with species-specific Rubisco parameters to quantify the consequences of bioengineering foreign Rubiscos into C3 and C4 crops under field conditions. The 'two big leaf' (sunlit/shaded) model for canopy photosynthesis was used together with species-specific Rubisco kinetic parameters including maximum rate (Kcat), Michaelis-Menten constant for CO2 at ambient atmospheric O2 (Kc21%O2), specificity for CO2 to O2 (Sc/o), and associated heat activation (Ha) values. Canopy-scale consequences of replacing native Rubiscos in wheat, maize, and sugar beet with foreign enzymes from 27 species were modelled using data from Ameriflux and Fluxnet databases. Variation among the included Rubisco kinetics differentially affected modelled carbon uptake rates, and Rubiscos from several species of C4 grasses showed the greatest potential of >50% carbon uptake improvement in wheat, and >25% improvement in sugar beet and maize. This study also reaffirms the need for data on fully characterized Rubiscos from more species, and for better parameterization of 'Vcmax' and temperature response of 'Jmax' in ESMs.
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Affiliation(s)
- Wasim A Iqbal
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
- Correspondence:
| | - Isabel G Miller
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
| | - Rebecca L Moore
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
| | - Iain J Hope
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
| | - Daniel Cowan-Turner
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
| | - Maxim V Kapralov
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
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26
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Stringlis IA, Teixeira PJPL, Berendsen RL, Pieterse CMJ, Zamioudis C. Editorial: Beneficial Microbiota Interacting With the Plant Immune System. FRONTIERS IN PLANT SCIENCE 2021; 12:698902. [PMID: 34239532 PMCID: PMC8258401 DOI: 10.3389/fpls.2021.698902] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 05/14/2021] [Indexed: 05/28/2023]
Affiliation(s)
- Ioannis A. Stringlis
- Plant-Microbe Interactions, Department of Biology, Science for Life, Utrecht University, Utrecht, Netherlands
| | - Paulo J. P. L. Teixeira
- Department of Biology, 'Luiz de Queiroz' College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, Brazil
| | - Roeland L. Berendsen
- Plant-Microbe Interactions, Department of Biology, Science for Life, Utrecht University, Utrecht, Netherlands
| | - Corné M. J. Pieterse
- Plant-Microbe Interactions, Department of Biology, Science for Life, Utrecht University, Utrecht, Netherlands
| | - Christos Zamioudis
- Laboratory of Plant Pathology, Department of Agricultural Development, Democritus University of Thrace, Orestiada, Greece
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27
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González FG, Manavella PA. Prospects for plant productivity: from the canopy to the nucleus. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:3931-3935. [PMID: 34003934 DOI: 10.1093/jxb/erab147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Population growth has been closely associated with agricultural production, since the first famine predicted by Malthus (1798) up to the Green Revolution of the past century. Today, we continue to face increasing demand for food and crop production (Tilman et al., 2011). Considering the combined caloric or protein content of the 275 major crops used directly as human foods or as livestock and fish feeds, Tilman et al. (2011) forecast a 100% increase in global demand for crops from 2005 to 2050. Meeting this demand with the lowest impact on the environment could be achieved by sustainable intensification of existing cropland with reduced land clearing (Tilman et al., 2011; Fischer and Connor, 2018).
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Affiliation(s)
- Fernanda G González
- Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires (CITNOBA, CONICET- UNNOBA-UNSADA), 2700 Pergamino, Buenos Aires, Argentina
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA 2700 Pergamino, Buenos Aires, Argentina
| | - Pablo A Manavella
- Instituto de Agrobiotecnología del Litoral (CONICET-UNL), Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, 3000 Santa Fe, Argentina
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28
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Araus JL, Sanchez-Bragado R, Vicente R. Improving crop yield and resilience through optimization of photosynthesis: panacea or pipe dream? JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:3936-3955. [PMID: 33640973 DOI: 10.1093/jxb/erab097] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 02/24/2021] [Indexed: 05/21/2023]
Abstract
Increasing the speed of breeding to enhance crop productivity and adaptation to abiotic stresses is urgently needed. The perception that a second Green Revolution should be implemented is widely established within the scientific community and among stakeholders. In recent decades, different alternatives have been proposed for increasing crop yield through manipulation of leaf photosynthetic efficiency. However, none of these has delivered practical or relevant outputs. Indeed, the actual increases in photosynthetic rates are not expected to translate into yield increases beyond 10-15%. Furthermore, instantaneous rates of leaf photosynthesis are not necessarily the reference target for research. Yield is the result of canopy photosynthesis, understood as the contribution of laminar and non-laminar organs over time, within which concepts such as canopy architecture, stay-green, or non-laminar photosynthesis need to be taken into account. Moreover, retrospective studies show that photosynthetic improvements have been more common at the canopy level. Nevertheless, it is crucial to place canopy photosynthesis in the context of whole-plant functioning, which includes sink-source balance and transport of photoassimilates, and the availability and uptake of nutrients, such as nitrogen in particular. Overcoming this challenge will only be feasible if a multiscale crop focus combined with a multidisciplinary scientific approach is adopted.
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Affiliation(s)
- José L Araus
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of Barcelona, Barcelona, and AGROTECNIO Center, Lleida, Spain
| | - Ruth Sanchez-Bragado
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of Barcelona, Barcelona, and AGROTECNIO Center, Lleida, Spain
| | - Rubén Vicente
- Plant Ecophysiology and Metabolism Group, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal
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29
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Cooney LJ, Beechey-Gradwell Z, Winichayakul S, Richardson KA, Crowther T, Anderson P, Scott RW, Bryan G, Roberts NJ. Changes in Leaf-Level Nitrogen Partitioning and Mesophyll Conductance Deliver Increased Photosynthesis for Lolium perenne Leaves Engineered to Accumulate Lipid Carbon Sinks. FRONTIERS IN PLANT SCIENCE 2021; 12:641822. [PMID: 33897730 PMCID: PMC8063613 DOI: 10.3389/fpls.2021.641822] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 02/11/2021] [Indexed: 06/12/2023]
Abstract
Diacylglycerol acyl-transferase (DGAT) and cysteine oleosin (CO) expression confers a novel carbon sink (of encapsulated lipid droplets) in leaves of Lolium perenne and has been shown to increase photosynthesis and biomass. However, the physiological mechanism by which DGAT + CO increases photosynthesis remains unresolved. To evaluate the relationship between sink strength and photosynthesis, we examined fatty acids (FA), water-soluble carbohydrates (WSC), gas exchange parameters and leaf nitrogen for multiple DGAT + CO lines varying in transgene accumulation. To identify the physiological traits which deliver increased photosynthesis, we assessed two important determinants of photosynthetic efficiency, CO2 conductance from atmosphere to chloroplast, and nitrogen partitioning between different photosynthetic and non-photosynthetic pools. We found that DGAT + CO accumulation increased FA at the expense of WSC in leaves of L. perenne and for those lines with a significant reduction in WSC, we also observed an increase in photosynthesis and photosynthetic nitrogen use efficiency. DGAT + CO L. perenne displayed no change in rubisco content or Vcmax but did exhibit a significant increase in specific leaf area (SLA), stomatal and mesophyll conductance, and leaf nitrogen allocated to photosynthetic electron transport. Collectively, we showed that increased carbon demand via DGAT+CO lipid sink accumulation can induce leaf-level changes in L. perenne which deliver increased rates of photosynthesis and growth. Carbon sinks engineered within photosynthetic cells provide a promising new strategy for increasing photosynthesis and crop productivity.
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30
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Machado Filho JA, Rodrigues WP, Baroni DF, Pireda S, Campbell G, de Souza GAR, Verdin Filho AC, Arantes SD, de Oliveira Arantes L, da Cunha M, Gambetta GA, Rakocevic M, Ramalho JC, Campostrini E. Linking root and stem hydraulic traits to leaf physiological parameters in Coffea canephora clones with contrasting drought tolerance. JOURNAL OF PLANT PHYSIOLOGY 2021; 258-259:153355. [PMID: 33581558 DOI: 10.1016/j.jplph.2020.153355] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Revised: 12/01/2020] [Accepted: 12/21/2020] [Indexed: 06/12/2023]
Abstract
Knowing the key hydraulic traits of different genotypes at early seedling stages can potentially provide crucial information and save time for breeding programs. In the current study we investigated: (1) how root, stem and whole plant conductivities are linked to xylem traits, and (2) how the integrated hydraulic system impacts leaf water potential, gas exchange, chlorophyll a fluorescence and the growth of three coffee cultivars (clones of Coffea canephora Pierre ex Froehner cv. Conilon) with known differences in drought tolerance. The Conilon clones CL 14, CL 5 V and CL 109A, classified as tolerant, moderately tolerant, and sensitive to drought respectively, were grown under non-limiting soil-water supply but high atmospheric demand (i.e., high VPDair). CL 14 and CL 5 V displayed higher root and stem hydraulic conductance and conductivity, and higher whole plant conductivity than CL 109A, and these differences were associated with higher root growth traits. In addition, CL 109A exhibited a non-significant trend towards wider vessels. Collectively, these responses likely contributed to reduce leaf water potential in CL 109A, and in turn, reduced leaf gas exchange, especially during elevated VPDair. Even when grown under well-watered conditions, the elevated VPDair observed during this study resulted in key differences in the hydraulic traits between the cultivars corresponding to differences in plant water status, gas exchange, and photochemical activity. Together these results suggest that coffee hydraulic traits, even when grown under non-water stress conditions, can be considered in breeding programs targeting more productive and efficient genotypes under drought and high atmospheric demand.
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Affiliation(s)
- José Altino Machado Filho
- Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural, 29052-010, Vitória, ES, Brazil
| | - Weverton Pereira Rodrigues
- Centro de Ciências Agrárias, Naturais e Letras, Universidade Estadual da Região Tocantina do Maranhão, Avenida Brejo do Pinto, S/N, 65975-000, Estreito, Maranhão, Brazil.
| | - Danilo Força Baroni
- Setor de Fisiologia Vegetal, LMGV, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego, 2000, CEP: 28013620, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | - Saulo Pireda
- Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense (UENF), Av. Alberto Lamego 2000, Campos dos Goytacazes, 28013-602, Rio de Janeiro, Brazil
| | - Glaziele Campbell
- Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense (UENF), Av. Alberto Lamego 2000, Campos dos Goytacazes, 28013-602, Rio de Janeiro, Brazil
| | - Guilherme Augusto Rodrigues de Souza
- Setor de Fisiologia Vegetal, LMGV, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Av. Alberto Lamego, 2000, CEP: 28013620, Campos dos Goytacazes, Rio de Janeiro, Brazil
| | | | - Sara Dousseau Arantes
- Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural, 29052-010, Vitória, ES, Brazil
| | - Lúcio de Oliveira Arantes
- Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural, 29052-010, Vitória, ES, Brazil
| | - Maura da Cunha
- Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense (UENF), Av. Alberto Lamego 2000, Campos dos Goytacazes, 28013-602, Rio de Janeiro, Brazil
| | - Gregory A Gambetta
- EGFV (UMR 1287), Bordeaux-Sciences Agro, INRAE, Université de Bordeaux, ISVV, 210 chemin de Leysotte, 33882 Villenave d'Ornon, France
| | - Miroslava Rakocevic
- Centro de Ciências Agrárias, Naturais e Letras, Universidade Estadual da Região Tocantina do Maranhão, Avenida Brejo do Pinto, S/N, 65975-000, Estreito, Maranhão, Brazil
| | - José Cochicho Ramalho
- Lab. Interações Planta-Ambiente & Biodiversidade (PlantStress&Biodiversity), Centro de Estudos Florestais (CEF), Departamento de Recursos Naturais, Ambiente e Território (DRAT), Instituto Superior de Agronomia (ISA), Universidade de Lisboa (ULisboa), Av. República, 2784-505, Oeiras, Portugal; GeoBioSciences, GeoTechnologies and GeoEngineering (GeoBioTec), Faculdade de Ciências Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Eliemar Campostrini
- Centro de Ciências Agrárias, Naturais e Letras, Universidade Estadual da Região Tocantina do Maranhão, Avenida Brejo do Pinto, S/N, 65975-000, Estreito, Maranhão, Brazil.
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31
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McAusland L, Vialet-Chabrand S, Jauregui I, Burridge A, Hubbart-Edwards S, Fryer MJ, King IP, King J, Pyke K, Edwards KJ, Carmo-Silva E, Lawson T, Murchie EH. Variation in key leaf photosynthetic traits across wheat wild relatives is accession dependent not species dependent. THE NEW PHYTOLOGIST 2020; 228:1767-1780. [PMID: 32910841 DOI: 10.1111/nph.16832] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 07/03/2020] [Indexed: 05/26/2023]
Abstract
The wild relatives of modern wheat represent an underutilized source of genetic and phenotypic diversity and are of interest in breeding owing to their wide adaptation to diverse environments. Leaf photosynthetic traits underpin the rate of production of biomass and yield and have not been systematically explored in the wheat relatives. This paper identifies and quantifies the phenotypic variation in photosynthetic, stomatal, and morphological traits in up to 88 wheat wild relative accessions across five genera. Both steady-state measurements and dynamic responses to step changes in light intensity are assessed. A 2.3-fold variation for flag leaf light and CO2 -saturated rates of photosynthesis Amax was observed. Many accessions showing higher and more variable Amax , maximum rates of carboxylation, electron transport, and Rubisco activity when compared with modern genotypes. Variation in dynamic traits was also significant; with distinct genus-specific trends in rates of induction of nonphotochemical quenching and rate of stomatal opening. We conclude that utilization of wild relatives for improvement of photosynthesis is supported by the existence of a high degree of natural variation in key traits and should consider not only genus-level properties but variation between individual accessions.
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Affiliation(s)
- Lorna McAusland
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK
| | | | - Iván Jauregui
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | | | - Stella Hubbart-Edwards
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK
| | - Michael J Fryer
- School of Life Science, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, UK
| | - Ian P King
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK
| | - Julie King
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK
| | - Kevin Pyke
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK
| | | | | | - Tracy Lawson
- School of Life Science, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, UK
| | - Erik H Murchie
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK
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32
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Gunn LH, Martin Avila E, Birch R, Whitney SM. The dependency of red Rubisco on its cognate activase for enhancing plant photosynthesis and growth. Proc Natl Acad Sci U S A 2020; 117:25890-25896. [PMID: 32989135 PMCID: PMC7568259 DOI: 10.1073/pnas.2011641117] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Plant photosynthesis and growth are often limited by the activity of the CO2-fixing enzyme Rubisco. The broad kinetic diversity of Rubisco in nature is accompanied by differences in the composition and compatibility of the ancillary proteins needed for its folding, assembly, and metabolic regulation. Variations in the protein folding needs of catalytically efficient red algae Rubisco prevent their production in plants. Here, we show this impediment does not extend to Rubisco from Rhodobacter sphaeroides (RsRubisco)-a red-type Rubisco able to assemble in plant chloroplasts. In transplastomic tobRsLS lines expressing a codon optimized Rs-rbcLS operon, the messenger RNA (mRNA) abundance was ∼25% of rbcL transcript and RsRubisco ∼40% the Rubisco content in WT tobacco. To mitigate the low activation status of RsRubisco in tobRsLS (∼23% sites active under ambient CO2), the metabolic repair protein RsRca (Rs-activase) was introduced via nuclear transformation. RsRca production in the tobRsLS::X progeny matched endogenous tobacco Rca levels (∼1 µmol protomer·m2) and enhanced RsRubisco activation to 75% under elevated CO2 (1%, vol/vol) growth. Accordingly, the rate of photosynthesis and growth in the tobRsLS::X lines were improved >twofold relative to tobRsLS. Other tobacco lines producing RsRubisco containing alternate diatom and red algae S-subunits were nonviable as CO2-fixation rates (kcatc) were reduced >95% and CO2/O2 specificity impaired 30-50%. We show differences in hybrid and WT RsRubisco biogenesis in tobacco correlated with assembly in Escherichia coli advocating use of this bacterium to preevaluate the kinetic and chloroplast compatibility of engineered RsRubisco, an isoform amenable to directed evolution.
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Affiliation(s)
- Laura H Gunn
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Elena Martin Avila
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Rosemary Birch
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Spencer M Whitney
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
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