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For: Lake JA, Rivera MC. Deriving the Genomic Tree of Life in the Presence of Horizontal Gene Transfer: Conditioned Reconstruction. Mol Biol Evol 2004;21:681-90. [PMID: 14739244 DOI: 10.1093/molbev/msh061] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Patané JSL, Martins J, Setubal JC. A Guide to Phylogenomic Inference. Methods Mol Biol 2024;2802:267-345. [PMID: 38819564 DOI: 10.1007/978-1-0716-3838-5_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
2
Gu X. Genome distance and phylogenetic inference accommodating gene duplication, loss and new gene input. Mol Phylogenet Evol 2023;189:107916. [PMID: 37742882 DOI: 10.1016/j.ympev.2023.107916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 08/06/2023] [Accepted: 09/04/2023] [Indexed: 09/26/2023]
3
Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Göker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 2020;11:468. [PMID: 32373076 PMCID: PMC7179689 DOI: 10.3389/fmicb.2020.00468] [Citation(s) in RCA: 296] [Impact Index Per Article: 59.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 03/04/2020] [Indexed: 11/13/2022]  Open
4
Pett W, Adamski M, Adamska M, Francis WR, Eitel M, Pisani D, Wörheide G. The Role of Homology and Orthology in the Phylogenomic Analysis of Metazoan Gene Content. Mol Biol Evol 2019;36:643-649. [PMID: 30690573 DOI: 10.1093/molbev/msz013] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
5
Patané JSL, Martins J, Setubal JC. Phylogenomics. Methods Mol Biol 2018;1704:103-187. [PMID: 29277865 DOI: 10.1007/978-1-4939-7463-4_5] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
6
Spencer M, Susko E, Roger AJ. Modelling Prokaryote Gene Content. Evol Bioinform Online 2017. [DOI: 10.1177/117693430600200029] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
7
McInerney J, Pisani D, O'Connell MJ. The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data. Philos Trans R Soc Lond B Biol Sci 2016;370:20140323. [PMID: 26323755 DOI: 10.1098/rstb.2014.0323] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
8
Rosenfeld JA, Foox J, DeSalle R. Insect genome content phylogeny and functional annotation of core insect genomes. Mol Phylogenet Evol 2016;97:224-232. [DOI: 10.1016/j.ympev.2015.10.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Revised: 09/02/2015] [Accepted: 10/13/2015] [Indexed: 10/22/2022]
9
Murray GGR, Weinert LA, Rhule EL, Welch JJ. The Phylogeny of Rickettsia Using Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution? Syst Biol 2015;65:265-79. [PMID: 26559010 PMCID: PMC4748751 DOI: 10.1093/sysbio/syv084] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Accepted: 11/04/2015] [Indexed: 11/14/2022]  Open
10
Origins of major archaeal clades correspond to gene acquisitions from bacteria. Nature 2014;517:77-80. [PMID: 25317564 PMCID: PMC4285555 DOI: 10.1038/nature13805] [Citation(s) in RCA: 169] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Accepted: 08/28/2014] [Indexed: 01/28/2023]
11
Grant JR, Katz LA. Phylogenomic study indicates widespread lateral gene transfer in Entamoeba and suggests a past intimate relationship with parabasalids. Genome Biol Evol 2014;6:2350-60. [PMID: 25146649 PMCID: PMC4217692 DOI: 10.1093/gbe/evu179] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/14/2014] [Indexed: 12/13/2022]  Open
12
Shifman A, Ninyo N, Gophna U, Snir S. Phylo SI: a new genome-wide approach for prokaryotic phylogeny. Nucleic Acids Res 2013;42:2391-404. [PMID: 24243847 PMCID: PMC3936750 DOI: 10.1093/nar/gkt1138] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
13
Romance of the three domains: how cladistics transformed the classification of cellular organisms. Protein Cell 2013;4:664-76. [PMID: 23873078 PMCID: PMC4875529 DOI: 10.1007/s13238-013-3050-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2013] [Accepted: 07/01/2013] [Indexed: 11/23/2022]  Open
14
[Phylogenetic application and analysis of horizontal transfer based on the prokaryote eno gene]. YI CHUAN = HEREDITAS 2012;34:907-18. [PMID: 22805218 DOI: 10.3724/sp.j.1005.2012.00907] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
15
Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR. Novel Distances for Dollo Data. Syst Biol 2012;62:62-77. [DOI: 10.1093/sysbio/sys071] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
16
Meinel T, Krause A. Meta-analysis of general bacterial subclades in whole-genome phylogenies using tree topology profiling. Evol Bioinform Online 2012;8:489-525. [PMID: 22915837 PMCID: PMC3422217 DOI: 10.4137/ebo.s9642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]  Open
17
Sinsheimer JS, Little RJA, Lake JA. Rooting gene trees without outgroups: EP rooting. Genome Biol Evol 2012;4:709-19. [PMID: 22593551 PMCID: PMC3509888 DOI: 10.1093/gbe/evs047] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
18
Rosenfeld JA, DeSalle R. E value cutoff and eukaryotic genome content phylogenetics. Mol Phylogenet Evol 2012;63:342-50. [PMID: 22306824 DOI: 10.1016/j.ympev.2012.01.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2011] [Revised: 01/02/2012] [Accepted: 01/03/2012] [Indexed: 10/14/2022]
19
Anderson CNK, Liu L, Pearl D, Edwards SV. Tangled trees: the challenge of inferring species trees from coalescent and noncoalescent genes. Methods Mol Biol 2012;856:3-28. [PMID: 22399453 DOI: 10.1007/978-1-61779-585-5_1] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
20
McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM. Planctomycetes and eukaryotes: a case of analogy not homology. Bioessays 2011;33:810-7. [PMID: 21858844 PMCID: PMC3795523 DOI: 10.1002/bies.201100045] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2011] [Revised: 07/13/2011] [Accepted: 07/15/2011] [Indexed: 11/11/2022]
21
Kumar S, Filipski AJ, Battistuzzi FU, Kosakovsky Pond SL, Tamura K. Statistics and truth in phylogenomics. Mol Biol Evol 2011;29:457-72. [PMID: 21873298 DOI: 10.1093/molbev/msr202] [Citation(s) in RCA: 176] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
22
McInerney JO, Pisani D, Bapteste E, O'Connell MJ. The Public Goods Hypothesis for the evolution of life on Earth. Biol Direct 2011;6:41. [PMID: 21861918 PMCID: PMC3179745 DOI: 10.1186/1745-6150-6-41] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2011] [Accepted: 08/23/2011] [Indexed: 02/01/2023]  Open
23
Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life. Cladistics 2011;27:417-427. [PMID: 34875790 DOI: 10.1111/j.1096-0031.2010.00337.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
24
Beiko RG. Telling the whole story in a 10,000-genome world. Biol Direct 2011;6:34. [PMID: 21714939 PMCID: PMC3158115 DOI: 10.1186/1745-6150-6-34] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2011] [Accepted: 06/30/2011] [Indexed: 01/07/2023]  Open
25
Leigh JW, Lapointe FJ, Lopez P, Bapteste E. Evaluating phylogenetic congruence in the post-genomic era. Genome Biol Evol 2011;3:571-87. [PMID: 21712432 PMCID: PMC3156567 DOI: 10.1093/gbe/evr050] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/27/2011] [Indexed: 12/04/2022]  Open
26
Sangaralingam A, Susko E, Bryant D, Spencer M. On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations. BMC Evol Biol 2010;10:343. [PMID: 21062453 PMCID: PMC2992526 DOI: 10.1186/1471-2148-10-343] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2010] [Accepted: 11/09/2010] [Indexed: 11/10/2022]  Open
27
Gribaldo S, Poole AM, Daubin V, Forterre P, Brochier-Armanet C. The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? Nat Rev Microbiol 2010;8:743-52. [PMID: 20844558 DOI: 10.1038/nrmicro2426] [Citation(s) in RCA: 114] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
28
En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 2010;33:175-82. [PMID: 20409658 DOI: 10.1016/j.syapm.2010.03.003] [Citation(s) in RCA: 250] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2009] [Revised: 03/10/2010] [Accepted: 03/17/2010] [Indexed: 11/23/2022]
29
Cavalier-Smith T. Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution. Biol Direct 2010;5:7. [PMID: 20132544 PMCID: PMC2837639 DOI: 10.1186/1745-6150-5-7] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2009] [Accepted: 02/04/2010] [Indexed: 12/18/2022]  Open
30
Cohen O, Pupko T. Inference and characterization of horizontally transferred gene families using stochastic mapping. Mol Biol Evol 2009;27:703-13. [PMID: 19808865 PMCID: PMC2822287 DOI: 10.1093/molbev/msp240] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
31
Lake JA. Evidence for an early prokaryotic endosymbiosis. Nature 2009;460:967-71. [PMID: 19693078 DOI: 10.1038/nature08183] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
32
Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T. A likelihood framework to analyse phyletic patterns. Philos Trans R Soc Lond B Biol Sci 2009;363:3903-11. [PMID: 18852099 DOI: 10.1098/rstb.2008.0177] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
33
New methods for selective isolation of bacterial DNA from human clinical specimens. Anaerobe 2009;16:47-53. [PMID: 19463963 DOI: 10.1016/j.anaerobe.2009.04.009] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2008] [Revised: 04/20/2009] [Accepted: 04/30/2009] [Indexed: 11/23/2022]
34
Spencer M, Sangaralingam A. A phylogenetic mixture model for gene family loss in parasitic bacteria. Mol Biol Evol 2009;26:1901-8. [PMID: 19435739 DOI: 10.1093/molbev/msp102] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
35
Creevey CJ, McInerney JO. Trees from trees: construction of phylogenetic supertrees using clann. Methods Mol Biol 2009;537:139-161. [PMID: 19378143 DOI: 10.1007/978-1-59745-251-9_7] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
36
Beiko RG, Doolittle WF, Charlebois RL. The Impact of Reticulate Evolution on Genome Phylogeny. Syst Biol 2008;57:844-56. [DOI: 10.1080/10635150802559265] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
37
McCann A, Cotton JA, McInerney JO. The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods. BMC Evol Biol 2008;8:312. [PMID: 19014489 PMCID: PMC2592249 DOI: 10.1186/1471-2148-8-312] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2008] [Accepted: 11/12/2008] [Indexed: 11/10/2022]  Open
38
Ding G, Yu Z, Zhao J, Wang Z, Li Y, Xing X, Wang C, Liu L, Li Y. Tree of life based on genome context networks. PLoS One 2008;3:e3357. [PMID: 18852873 PMCID: PMC2566592 DOI: 10.1371/journal.pone.0003357] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2008] [Accepted: 09/11/2008] [Indexed: 11/18/2022]  Open
39
[Methods for the identification of horizontal gene transfer (HGT) events and progress in related fields]. YI CHUAN = HEREDITAS 2008;30:1108-14. [PMID: 18779166 DOI: 10.3724/sp.j.1005.2008.01108] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
40
Lake JA. Reconstructing evolutionary graphs: 3D parsimony. Mol Biol Evol 2008;25:1677-82. [PMID: 18492661 DOI: 10.1093/molbev/msn117] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
41
Rivera MC. Genomic analyses and the origin of the eukaryotes. Chem Biodivers 2007;4:2631-8. [PMID: 18027376 DOI: 10.1002/cbdv.200790215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
42
Egel R, Penny D. On the Origin of Meiosis in Eukaryotic Evolution: Coevolution of Meiosis and Mitosis from Feeble Beginnings. RECOMBINATION AND MEIOSIS 2007. [DOI: 10.1007/7050_2007_036] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
43
Struck TH. Data congruence, paedomorphosis and salamanders. Front Zool 2007;4:22. [PMID: 17974010 PMCID: PMC2234405 DOI: 10.1186/1742-9994-4-22] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2006] [Accepted: 10/31/2007] [Indexed: 12/20/2022]  Open
44
Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution. Nat Genet 2007;39:1361-8. [PMID: 17922013 DOI: 10.1038/ng.2007.9] [Citation(s) in RCA: 143] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2007] [Accepted: 08/07/2007] [Indexed: 01/22/2023]
45
Spencer M, Bryant D, Susko E. Conditioned genome reconstruction: how to avoid choosing the conditioning genome. Syst Biol 2007;56:25-43. [PMID: 17366135 DOI: 10.1080/10635150601156313] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]  Open
46
Gupta RS, Sneath PHA. Application of the character compatibility approach to generalized molecular sequence data: branching order of the proteobacterial subdivisions. J Mol Evol 2006;64:90-100. [PMID: 17160641 DOI: 10.1007/s00239-006-0082-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2006] [Accepted: 08/28/2006] [Indexed: 10/23/2022]
47
Dohm JC, Vingron M, Staub E. Horizontal Gene Transfer in Aminoacyl-tRNA Synthetases Including Leucine-Specific Subtypes. J Mol Evol 2006;63:437-47. [PMID: 16955236 DOI: 10.1007/s00239-005-0094-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2005] [Accepted: 04/19/2006] [Indexed: 10/24/2022]
48
Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Reciprocal illumination in the gene content tree of life. Syst Biol 2006;55:441-53. [PMID: 16861208 DOI: 10.1080/10635150600697416] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]  Open
49
Hao W, Golding GB. The fate of laterally transferred genes: life in the fast lane to adaptation or death. Genome Res 2006;16:636-43. [PMID: 16651664 PMCID: PMC1457040 DOI: 10.1101/gr.4746406] [Citation(s) in RCA: 128] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
50
Lester L, Meade A, Pagel M. The slow road to the eukaryotic genome. Bioessays 2006;28:57-64. [PMID: 16369937 DOI: 10.1002/bies.20344] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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