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Xu Y, Kaste JAM, Weise SE, Shachar-Hill Y, Sharkey TD. The effects of photosynthetic rate on respiration in light, starch/sucrose partitioning, and other metabolic fluxes within photosynthesis. Sci Rep 2025; 15:8389. [PMID: 40069307 PMCID: PMC11897357 DOI: 10.1038/s41598-025-88574-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 01/29/2025] [Indexed: 03/15/2025] Open
Abstract
In the future, plants may encounter increased light and elevated CO2 levels. How consequent alterations in photosynthetic rates will impact fluxes in photosynthetic carbon metabolism remains uncertain. Respiration in light (RL) is pivotal in plant carbon balance and a key parameter in photosynthesis models. Understanding the dynamics of photosynthetic metabolism and RL under varying environmental conditions is essential for optimizing plant growth and agricultural productivity. However, measuring RL under high light and high CO2 (HLHC) conditions poses challenges using traditional gas exchange methods. In this study, we employed isotopically nonstationary metabolic flux analysis (INST-MFA) to estimate RL and investigate photosynthetic carbon flux, unveiling nuanced adjustments in Camelina sativa under HLHC. Despite numerous flux alterations in HLHC, RL remained stable. HLHC affects several factors influencing RL, such as starch and sucrose partitioning, vo/vc ratio, triose phosphate partitioning, and hexose kinase activity. Analysis of A/Ci curve operational points reveals that HLHC's major changes primarily stem from CO2 suppressing photorespiration. Integration of these fluxes into a simplified model predicts changes in CBC labeling under HLHC. This study extends our prior discovery that incomplete CBC labeling is due to unlabeled carbon reimported during RL, offering insights into manipulating labeling through adjustments in photosynthetic rates.
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Affiliation(s)
- Yuan Xu
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
| | - Joshua A M Kaste
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
- Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, 205 N Matthews Ave, Urbana, IL, 61801, USA
| | - Sean E Weise
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Yair Shachar-Hill
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Thomas D Sharkey
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA.
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA.
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Hu H, Jiang W, Fan X. Estimating CO 2 response in a mixed broadleaf forest using the dynamic assimilation technique. BMC PLANT BIOLOGY 2025; 25:79. [PMID: 39838287 PMCID: PMC11748533 DOI: 10.1186/s12870-024-05912-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Accepted: 12/02/2024] [Indexed: 01/23/2025]
Abstract
BACKGROUND Estimating the CO2 response of forest trees is of great significance in plant photosynthesis research. CO2 response measurement is traditionally employed under steady state conditions. With the development of open-path gas exchange systems, the Dynamic Assimilation Technique (DAT), allows measurement under non-steady state conditions. This greatly improves the efficiency and data density of CO2 response measurement. This study aims to assess the accuracy and effectiveness of different models in fitting DAT data, addressing the current gap in verification of model performance. RESULTS This research was conducted for three common broadleaf tree species (Ulmus macrocarpa, Fraxinus mandshurica, and Tilia amurensis) in North Eastern China. Among the three species, Fraxinus mandshurica is the most adapted to high CO2 concentration conditions. Four models were compared, the rectangular hyperbola (RH) model, the Michaelis-Menten (MM) model, the modified rectangular hyperbola (MRH) model and a non-rectangular hyperbola (NRH) model. CONCLUSIONS Considering the model parsimony and parameter accuracy, the NRH model emerged as the best choice (R2 = 0.9966, RMSE = 0.1862, AIC=-199.86). This study provides a reference for the further application of DAT in the field of photosynthesis.
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Affiliation(s)
- Huiting Hu
- College of Science, Beijing Forestry University, Beijing, China
| | - Wei Jiang
- College of Science, Beijing Forestry University, Beijing, China
| | - Xiuhua Fan
- College of Science, Beijing Forestry University, Beijing, China.
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Gregory LM, Scott KF, Sharpe LA, Roze LV, Schmiege SC, Hammer JM, Way DA, Walker BJ. Rubisco activity and activation state dictate photorespiratory plasticity in Betula papyrifera acclimated to future climate conditions. Sci Rep 2024; 14:26340. [PMID: 39487181 PMCID: PMC11530445 DOI: 10.1038/s41598-024-77049-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 10/17/2024] [Indexed: 11/04/2024] Open
Abstract
Plant metabolism faces a challenge of investing enough enzymatic capacity to a pathway without overinvestment. As it takes energy and resources to build, operate, and maintain enzymes, there are benefits and drawbacks to accurately matching capacity to the pathway influx. The relationship between functional capacity and physiological load could be explained through symmorphosis, which would quantitatively match enzymatic capacity to pathway influx. Alternatively, plants could maintain excess enzymatic capacity to manage unpredictable pathway influx. In this study, we use photorespiration as a case study to investigate these two hypotheses in Betula papyrifera. This involves altering photorespiratory influx by manipulating the growth environment, via changes in CO2 concentration and temperature, to determine how photorespiratory capacity acclimates to environmental treatments. Surprisingly, the results from these measurements indicate that there is no plasticity in photorespiratory capacity in B. papyrifera, and that a fixed capacity is maintained under each growth condition. The fixed capacity is likely due to the existence of reserve capacity in the pathway that manages unpredictable photorespiratory influx in dynamic environments. Additionally, we found that B. papyrifera had a constant net carbon assimilation under each growth condition due to an adjustment of functional rubisco activity driven by changes in activation state. These results provide insight into the acclimation ability and limitations of B. papyrifera to future climate scenarios currently predicted in the next century.
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Affiliation(s)
- Luke M Gregory
- Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Kate F Scott
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Luke A Sharpe
- Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Ludmila V Roze
- Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
| | - Stephanie C Schmiege
- Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biology, The University of Western Ontario, London, ON, Canada
| | - Julia M Hammer
- Department of Biology, The University of Western Ontario, London, ON, Canada
| | - Danielle A Way
- Department of Biology, The University of Western Ontario, London, ON, Canada
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Berkley J Walker
- Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA.
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.
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Leverett A, Kromdijk J. The long and tortuous path towards improving photosynthesis by engineering elevated mesophyll conductance. PLANT, CELL & ENVIRONMENT 2024; 47:3411-3427. [PMID: 38804598 DOI: 10.1111/pce.14940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 03/13/2024] [Accepted: 04/29/2024] [Indexed: 05/29/2024]
Abstract
The growing demand for global food production is likely to be a defining issue facing humanity over the next 50 years. To tackle this challenge, there is a desire to bioengineer crops with higher photosynthetic efficiencies, to increase yields. Recently, there has been a growing interest in engineering leaves with higher mesophyll conductance (gm), which would allow CO2 to move more efficiently from the substomatal cavities to the chloroplast stroma. However, if crop yield gains are to be realised through this approach, it is essential that the methodological limitations associated with estimating gm are fully appreciated. In this review, we summarise these limitations, and outline the uncertainties and assumptions that can affect the final estimation of gm. Furthermore, we critically assess the predicted quantitative effect that elevating gm will have on assimilation rates in crop species. We highlight the need for more theoretical modelling to determine whether altering gm is truly a viable route to improve crop performance. Finally, we offer suggestions to guide future research on gm, which will help mitigate the uncertainty inherently associated with estimating this parameter.
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Affiliation(s)
- Alistair Leverett
- Department of Plant Sciences, University of Cambridge, Cambridge, UK
| | - Johannes Kromdijk
- Department of Plant Sciences, University of Cambridge, Cambridge, UK
- Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
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Tcherkez G, Abadie C, Dourmap C, Lalande J, Limami AM. Leaf day respiration: More than just catabolic CO 2 production in the light. PLANT, CELL & ENVIRONMENT 2024; 47:2631-2639. [PMID: 38528759 DOI: 10.1111/pce.14904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 02/08/2024] [Accepted: 03/18/2024] [Indexed: 03/27/2024]
Abstract
Summary statementDay respiration is a net flux resulting from several CO2‐generating and CO2‐fixing reactions, not only related to catabolism but also to anabolism. We review pieces of evidence that decarboxylating reactions are partly fed by carbon sources disconnected from current photosynthesis and how they reflect various metabolic pathways.
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Affiliation(s)
- Guillaume Tcherkez
- Institut de recherche en horticulture et semences, Université d'Angers, INRAe, Beaucouzé, France
- Research school of biology, ANU College of Science, Australian National University, Canberra, Australia
| | - Cyril Abadie
- Institut de recherche en horticulture et semences, Université d'Angers, INRAe, Beaucouzé, France
- Ecophysiologie et génomique fonctionnelle de la vigne, Institut des Sciences de la Vigne et du Vin, INRAe, Université de Bordeaux, Villenave-d'Ornon, France
| | - Corentin Dourmap
- Institut de recherche en horticulture et semences, Université d'Angers, INRAe, Beaucouzé, France
| | - Julie Lalande
- Institut de recherche en horticulture et semences, Université d'Angers, INRAe, Beaucouzé, France
| | - Anis M Limami
- Institut de recherche en horticulture et semences, Université d'Angers, INRAe, Beaucouzé, France
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Xu Y, Schmiege SC, Sharkey TD. The oxidative pentose phosphate pathway in photosynthesis: a tale of two shunts. THE NEW PHYTOLOGIST 2024; 242:2453-2463. [PMID: 38567702 DOI: 10.1111/nph.19730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 03/17/2024] [Indexed: 05/24/2024]
Abstract
CO2 release in the light (RL) and its presumed source, oxidative pentose phosphate pathways, were found to be insensitive to CO2 concentration. The oxidative pentose phosphate pathways form glucose 6-phosphate (G6P) shunts that bypass the nonoxidative pentose phosphate reactions of the Calvin-Benson cycle. Using adenosine diphosphate glucose and uridine diphosphate glucose as proxies for labeling of G6P in the stroma and cytosol respectively, it was found that only the cytosolic shunt was active. Uridine diphosphate glucose, a proxy for cytosolic G6P, and 6-phosphogluconate (6PG) were significantly less labeled than Calvin-Benson cycle intermediates in the light. But ADP glucose, a proxy for stromal G6P, is labeled to the same degree as Calvin-Benson cycle intermediates and much greater than 6PG. A metabolically inert pool of sedoheptulose bisphosphate can slowly equilibrate keeping the label in sedoheptulose lower than in other stromal metabolites. Finally, phosphorylation of fructose 6-phosphate (F6P) in the cytosol can allow some unlabeled carbon in cytosolic F6P to dilute label in phosphenolpyruvate. The results clearly show that there is oxidative pentose phosphate pathway activity in the cytosol that provides a shunt around the nonoxidative pentose phosphate pathway reactions of the Calvin-Benson cycle and is not strongly CO2-sensitive.
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Affiliation(s)
- Yuan Xu
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
| | - Stephanie C Schmiege
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biology, Western University, London, ON, N6A 5B7, Canada
| | - Thomas D Sharkey
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
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Sharkey TD. The end game(s) of photosynthetic carbon metabolism. PLANT PHYSIOLOGY 2024; 195:67-78. [PMID: 38163636 PMCID: PMC11060661 DOI: 10.1093/plphys/kiad601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 10/27/2023] [Indexed: 01/03/2024]
Abstract
The year 2024 marks 70 years since the general outline of the carbon pathway in photosynthesis was published. Although several alternative pathways are now known, it is remarkable how many organisms use the reaction sequence described 70 yrs ago, which is now known as the Calvin-Benson cycle or variants such as the Calvin-Benson-Bassham cycle or Benson-Calvin cycle. However, once the carbon has entered the Calvin-Benson cycle and is converted to a 3-carbon sugar, it has many potential fates. This review will examine the last stages of photosynthetic metabolism in leaves. In land plants, this process mostly involves the production of sucrose provided by an endosymbiont (the chloroplast) to its host for use and transport to the rest of the plant. Photosynthetic metabolism also usually involves the synthesis of starch, which helps maintain respiration in the dark and enables the symbiont to supply sugars during both the day and night. Other end products made in the chloroplast are closely tied to photosynthetic CO2 assimilation. These include serine from photorespiration and various amino acids, fatty acids, isoprenoids, and shikimate pathway products. I also describe 2 pathways that can short circuit parts of the Calvin-Benson cycle. These final processes of photosynthetic metabolism play many important roles in plants.
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Affiliation(s)
- Thomas D Sharkey
- MSU-DOE Plant Research Laboratory, Plant Resilience Institute, and Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
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Schmiege SC, Walker BJ, Sharkey TD. Using Gas Exchange to Study CO 2 Release During Photosynthesis with Steady- and Nonsteady-State Approaches. Methods Mol Biol 2024; 2792:143-161. [PMID: 38861085 DOI: 10.1007/978-1-0716-3802-6_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
Measures of respiration in the light and Ci* are crucial to the modeling of photorespiration and photosynthesis. This chapter provides background on the equations used to model C3 photosynthesis and the history of the incorporation of the effects of rubisco oxygenation into these models. It then describes three methods used to determine two key parameters necessary to incorporate photorespiratory effects into C3 photosynthesis models: respiration in the light (RL) and Ci*. These methods include the Laisk, Yin, and isotopic methods. For the Laisk method, we also introduce a new rapid measurement technique.
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Affiliation(s)
- Stephanie C Schmiege
- Plant Resilience Institute, Michigan State University, East Lansing, MI, USA.
- Department of Biology, Western University, London, ON, Canada.
| | - Berkley J Walker
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Thomas D Sharkey
- Plant Resilience Institute, Michigan State University, East Lansing, MI, USA
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA
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Yin X, Amthor JS. Estimating leaf day respiration from conventional gas exchange measurements. THE NEW PHYTOLOGIST 2024; 241:52-58. [PMID: 37858976 DOI: 10.1111/nph.19330] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 09/21/2023] [Indexed: 10/21/2023]
Abstract
Leaf day respiration (Rd ) strongly influences carbon-use efficiencies of whole plants and the global terrestrial biosphere. It has long been thought that Rd is slower than respiration in the dark at a given temperature, but measuring Rd by gas exchange remains a challenge because leaves in the light are also photosynthesizing. The Kok method and the Laisk method are widely used to estimate Rd . We highlight theoretical limitations of these popular methods, and recent progress toward their improvement by using additional information from chlorophyll fluorescence and by accounting for the photosynthetic reassimilation of respired CO2 . The latest evidence for daytime CO2 and energy release from the oxidative pentose phosphate pathway in chloroplasts appears to be important to understanding Rd .
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Affiliation(s)
- Xinyou Yin
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University & Research, PO Box 430, 6700 AK, Wageningen, the Netherlands
| | - Jeffrey S Amthor
- Center for Ecosystem Science and Society, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA
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