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Wang C, Luo J, He W, Huang A, Lu W, Lin Y, Ou Y. Genome-wide identification and expression analysis of GDP-D-mannose pyrophosphorylase and KATANIN in Corymbia citriodora. FRONTIERS IN PLANT SCIENCE 2023; 14:1308354. [PMID: 38186597 PMCID: PMC10766700 DOI: 10.3389/fpls.2023.1308354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 12/05/2023] [Indexed: 01/09/2024]
Abstract
The GDP-D-mannose pyrophosphorylase (GMP) and microtubule severing enzyme KATANIN (KTN) are crucial for wood formation. Although functional identification has been performed in Arabidopsis, few comprehensive studies have been conducted in forest trees. In this study, we discovered 8 CcGMP and 4 CcKTN genes by analyzing the whole genome sequence of Corymbia citriodora. The chromosomal location, genome synteny, phylogenetic relationship, protein domain, motif identification, gene structure, cis-acting regulatory elements, and protein-interaction of CcGMP and CcKTN were all investigated. KTN has just one pair of segmentally duplicated genes, while GMP has no duplication events. According to gene structure, two 5' UTRs were identified in CcGMP4. Furthermore, there is no protein-interaction between KTN and GMP. Based on real-time PCR, the expression of most genes showed a positive connection with DBH diameters. In addition, the expression of CcGMP4 and CcKTN4 genes were greater in different size tree, indicating that these genes are important in secondary xylem production. Overall, this findings will enhance our comprehension of the intricacy of CcGMP&CcKTN across diverse DBHs and furnish valuable insights for future functional characterization of specific genes in C. citriodora.
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Affiliation(s)
- Chubiao Wang
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, China
| | - Jianzhong Luo
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Wenliang He
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Anying Huang
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Wanhong Lu
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Yan Lin
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Yuduan Ou
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, China
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Liu G, Wu Z, Luo J, Wang C, Shang X, Zhang G. Genes expression profiles in vascular cambium of Eucalyptus urophylla × Eucalyptus grandis at different ages. BMC PLANT BIOLOGY 2023; 23:500. [PMID: 37848837 PMCID: PMC10583469 DOI: 10.1186/s12870-023-04500-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 09/30/2023] [Indexed: 10/19/2023]
Abstract
BACKGROUND Wood is a secondary xylem generated by vascular cambium. Vascular cambium activities mainly include cambium proliferation and vascular tissue formation through secondary growth, thereby producing new secondary phloem inward and secondary xylem outward and leading to continuous tree thickening and wood formation. Wood formation is a complex biological process, which is strictly regulated by multiple genes. Therefore, molecular level research on the vascular cambium of different tree ages can lead to the identification of both key and related genes involved in wood formation and further explain the molecular regulation mechanism of wood formation. RESULTS In the present study, RNA-Seq and Pac-Bio Iso-Seq were used for profiling gene expression changes in Eucalyptus urophylla × Eucalyptus grandis (E. urograndis) vascular cambium at four different ages. A total of 59,770 non-redundant transcripts and 1892 differentially expressed genes (DEGs) were identified. The expression trends of the DEGs related to cell division and differentiation, cell wall biosynthesis, phytohormone, and transcription factors were analyzed. The DEGs encoding expansin, kinesin, cycline, PAL, GRP9, KNOX, C2C2-dof, REV, etc., were highly expressed in E. urograndis at three years old, leading to positive effects on growth and development. Moreover, some gene family members, such as NAC, MYB, HD-ZIP III, RPK, and RAP, play different regulatory roles in wood formation because of their sophisticated transcriptional network and function redundantly. CONCLUSIONS These candidate genes are a potential resource to further study wood formation, especially in fast-growing and adaptable eucalyptus. The results may also serve as a basis for further research to unravel the molecular mechanism underlying wood formation.
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Affiliation(s)
- Guo Liu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Zhihua Wu
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Jianzhong Luo
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Chubiao Wang
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Xiuhua Shang
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China
| | - Guowu Zhang
- Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China.
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Cai Q, Liu Y, Fang C, Xie M, Zhang H, Li Q, Song H, Sun C, Liu R, Di T, Sun E, Wang Y. Insight into spatial-temporal patterns of hydroclimate change on the Chinese Loess Plateau over the past 250 years, using new evidence from tree rings. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 850:157960. [PMID: 35964748 DOI: 10.1016/j.scitotenv.2022.157960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 07/31/2022] [Accepted: 08/06/2022] [Indexed: 06/15/2023]
Abstract
The climate aridity since the mid-20th century has raised concerns about water resources on the Chinese Loess Plateau (CLP). A lack of extended observation-like precipitation records for the eastern CLP (ECLP) means that it remains unclear whether or not the current arid state of the CLP is unprecedented, and the spatial-temporal characteristics of hydroclimatic variability across the CLP over past centuries are not well understood. Here we present a regional hydrological-year precipitation reconstruction for the Heichashan Mountains, which successfully captures hydroclimate changes on the ECLP since 1773 CE. The reconstruction explains 48.72 % of the observed variance for 1957-2019 CE and reveals a wetting trend since the early 2000s and shows 2014-2020 CE to have been the second wettest period over the past 248 years. 1910-1932 CE was the longest and driest period over the past centuries. Furthermore, the 19th century was relatively wet, whereas the 20th century was dry. We demonstrate that droughts tend to occur in warm periods. Combining our new reconstruction with previously published hydroclimatic reconstructions, we find that hydroclimate has changed synchronously on the ECLP and the western CLP (WCLP) for most of the past two centuries. Some regional differences do exist, for example in the 1890s-1920s, when aridity gradually intensified across the ECLP, no similar drying is evident in records for the WCLP, although the 1920s megadrought occurred in both the ECLP and WCLP. Another difference is in the onset of the 20th-century aridity, which began in the 1950s on the ECLP, around 20 years later than it began on the WCLP. In addition to the known influences of the Asian Summer Monsoon and related large-scale circulations, this work highlights a major finding that the 1920s megadrought may be related to a regime shift in Northern Hemisphere temperature.
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Affiliation(s)
- Qiufang Cai
- The State Key Laboratory of Loess and Quaternary Geology, The Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, China; Open Studio for Oceanic-Continental Climate and Environment Changes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266061, China.
| | - Yu Liu
- The State Key Laboratory of Loess and Quaternary Geology, The Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, China; Open Studio for Oceanic-Continental Climate and Environment Changes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266061, China; School of Human Settlements and Civil Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Congxi Fang
- The State Key Laboratory of Loess and Quaternary Geology, The Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China
| | - Mei Xie
- The State Key Laboratory of Loess and Quaternary Geology, The Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China; The University of the Chinese Academy of Science, Beijing 100049, China
| | - Hanyu Zhang
- The State Key Laboratory of Loess and Quaternary Geology, The Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China; The University of the Chinese Academy of Science, Beijing 100049, China
| | - Qiang Li
- School of Human Settlements and Civil Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Huiming Song
- School of Human Settlements and Civil Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Changfeng Sun
- School of Human Settlements and Civil Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Ruoshi Liu
- School of Human Settlements and Civil Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Taoyuan Di
- The State-owned Forest Administration of Heichashan, Shanxi Province, Lanxian County 033599, China
| | - Erwen Sun
- The Zhongzhai Forestry Farm of the State-owned Forest Administration of Heichashan, Shanxi Province, Kelan County 036300, China
| | - Yong Wang
- The State-owned Forest Administration of Heichashan, Shanxi Province, Lanxian County 033599, China
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Guo Y, Xu H, Chen B, Grünhofer P, Schreiber L, Lin J, Zhao Y. Genome-wide analysis of long non-coding RNAs in shoot apical meristem and vascular cambium in Populus tomentosa. JOURNAL OF PLANT PHYSIOLOGY 2022; 275:153759. [PMID: 35820347 DOI: 10.1016/j.jplph.2022.153759] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 06/14/2022] [Accepted: 06/23/2022] [Indexed: 06/15/2023]
Abstract
Shoot apical and lateral meristems play essential roles in the formation and development of primary and secondary growth in plants. A delicate regulatory mechanism is needed to maintain homeostatic balance between the primary and secondary growth, as well as the self-renewal of meristems with the rate of cell division and differentiation of new meristems. However, little is known about the roles of long non-coding RNAs (lncRNAs) in the regulation of maintenance and differentiation of primary and secondary growth in Populus, especially in the cambium division and differentiation into secondary xylem. Here, 1298 lncRNAs were identified both in the apical meristem and vascular cambium, with 80 lncRNAs being expressed only in shoot apical meristem and 45 only in vascular cambium. There are 410 differentially expressed lncRNAs in shoot apical meristem and vascular cambium, among which 271 lncRNAs were up-regulated and 139 were down-regulated in cambium. The GO enrichment analysis revealed that differentially expressed lncRNAs mainly influenced the expression of lncRNAs related to the ribosome pathway, plant hormone signal pathway and photosynthesis pathway. The differentially expressed lncRNAs mainly target mRNA through cis-regulation in the vascular cambium. In addition, six key lncRNAs and also their significantly upregulated target genes were identified. Theses target genes are involved in plant secondary metabolites, cellulose and lignin synthesis, hormone and signal transduction. In addition, six key lncRNAs were identified, their significantly upregulated target genes are related to plant secondary metabolites, cellulose and lignin synthesis, hormone and signal transduction. Investigating lncRNA-mRNA interactions, we further found some genes that may be related to the development of vascular cambium, such as domain-containing transcription factors, cellulose synthesis genes, calcium dependent protein kinase 2, cytokinin receptor 1, glycosyl transferase and polyphenol oxidase. Our findings provide new insights into the lncRNA-mRNA networks in the development of vascular cambium of secondary growth in Populus.
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Affiliation(s)
- Yayu Guo
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China; College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China.
| | - Huimin Xu
- College of Biological Sciences, China Agricultural University, Beijing, 100193, China.
| | - Bo Chen
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China; College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China.
| | - Paul Grünhofer
- Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, D-53115, Bonn, Germany.
| | - Lukas Schreiber
- Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, D-53115, Bonn, Germany.
| | - Jinxing Lin
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China; College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China.
| | - Yuanyuan Zhao
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing 100083, China; College of Biological Science and Technology, Beijing Forestry University, Beijing, 100083, China.
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