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Lee T, Kang D, Kim M, Choi S, Cheong DY, Roh S, Oh SH, Park I, Lee G. Hydrophobic Barriers for Directing Physarum polycephalum Propulsion and Navigation. ACS OMEGA 2023; 8:41649-41654. [PMID: 37970039 PMCID: PMC10634242 DOI: 10.1021/acsomega.3c05560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 10/06/2023] [Accepted: 10/12/2023] [Indexed: 11/17/2023]
Abstract
Physarum polycephalum (P. polycephalum) is a unicellular protist with unique properties, such as learning and remembering in its cultured environment without a brain or central nervous system. The organism has been extensively used in morphology, taxis, and positive feedback dynamics studies. However, the lack of standardization of materials and substrate designs used in P. polycephalum studies has significantly limited conducting such studies, increasing the cost and time. In this study, we introduce a method to control the direction and migration of P. polycephalum by drawing hydrophobic lines and patterns. Our study succeeded in controlling the movement of P. polycephalum by setting a variety of hydrophobic designs such as complete barrier, single-slit barrier, taper barrier, dumbbell barrier, and one-side-opened rectangular barrier, suggesting the effectiveness of the hydrophobic barrier in regulating the propulsion and navigation of the organisms. Moreover, we demonstrated that utilizing such geometric constraints can reduce the experimental time required for toxicity testing based on P. polycephalum by more than 300%. Our techniques open new possibilities for studying the biophysical properties and behaviors of P. polycephalum, while also facilitating toxicity testing.
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Affiliation(s)
- Taeha Lee
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
| | - Dain Kang
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Minsu Kim
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Sukyung Choi
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Da Yeon Cheong
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
| | - Seokbeom Roh
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
| | - Seung Hyeon Oh
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Insu Park
- Department
of Biomedical Engineering, Konyang University, Daejeon 35365, South Korea
| | - Gyudo Lee
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
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2
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Reid CR. Thoughts from the forest floor: a review of cognition in the slime mould Physarum polycephalum. Anim Cogn 2023; 26:1783-1797. [PMID: 37166523 PMCID: PMC10770251 DOI: 10.1007/s10071-023-01782-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 04/27/2023] [Accepted: 04/28/2023] [Indexed: 05/12/2023]
Abstract
Sensing, communication, navigation, decision-making, memory and learning are key components in a standard cognitive tool-kit that enhance an animal's ability to successfully survive and reproduce. However, these tools are not only useful for, or accessible to, animals-they evolved long ago in simpler organisms using mechanisms which may be either unique or widely conserved across diverse taxa. In this article, I review the recent research that demonstrates these key cognitive abilities in the plasmodial slime mould Physarum polycephalum, which has emerged as a model for non-animal cognition. I discuss the benefits and limitations of comparisons drawn between neural and non-neural systems, and the implications of common mechanisms across wide taxonomic divisions. I conclude by discussing future avenues of research that will draw the most benefit from a closer integration of Physarum and animal cognition research.
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Affiliation(s)
- Chris R Reid
- School of Natural Sciences, Macquarie University, North Ryde, NSW, 2109, Australia.
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3
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Rolland A, Pasquier E, Malvezin P, Cassandra C, Dumas M, Dussutour A. Behavioural changes in slime moulds over time. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220063. [PMID: 36802777 PMCID: PMC9939273 DOI: 10.1098/rstb.2022.0063] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 10/21/2022] [Indexed: 02/21/2023] Open
Abstract
Changes in behaviour over the lifetime of single-cell organisms have primarily been investigated in response to environmental stressors. However, growing evidence suggests that unicellular organisms undergo behavioural changes throughout their lifetime independently of the external environment. Here we studied how behavioural performances across different tasks vary with age in the acellular slime mould Physarum polycephalum. We tested slime moulds aged from 1 week to 100 weeks. First, we showed that migration speed decreases with age in favourable and adverse environments. Second, we showed that decision making and learning abilities do not deteriorate with age. Third, we revealed that old slime moulds can recover temporarily their behavioural performances if they go throughout a dormant stage or if they fuse with a young congener. Last, we observed the response of slime mould facing a choice between cues released by clone mates of different age. We found that both old and young slime moulds are attracted preferentially toward cues left by young slime moulds. Although many studies have studied behaviour in unicellular organisms, few have taken the step of looking for changes in behaviour over the lifetime of individuals. This study extends our knowledge of the behavioural plasticity of single-celled organisms and establishes slime moulds as a promising model to investigate the effect of ageing on behaviour at the cellular level. This article is part of a discussion meeting issue 'Collective behaviour through time'.
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Affiliation(s)
- Angèle Rolland
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Emilie Pasquier
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Paul Malvezin
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Craig Cassandra
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Mathilde Dumas
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - A. Dussutour
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
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4
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Tureček P, Kleisner K. Symptomic Mimicry Between SARS-CoV-2 and the Common Cold Complex. BIOSEMIOTICS 2022; 15:61-66. [PMID: 35035606 PMCID: PMC8743349 DOI: 10.1007/s12304-021-09472-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Accepted: 12/18/2021] [Indexed: 06/14/2023]
Abstract
The recent changes in COVID-19 symptoms suggest convergent evolution of respiratory diseases. This process is analogous to the emergence of animal mimetic complexes and complements previously identified types of mimicry. A novel pathogen might go unnoticed or insufficiently counteracted if it resembles a disease that the host already faced on multiple occasions, which creates a selective pressure towards a typical symptomic phonotype. In short, the reason why so many unrelated pathogens cause similar symptoms may correspond to the reasons that drove the evolution of the 'warning' wasp-like colouration in various insect species.
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Affiliation(s)
- Petr Tureček
- Department of Philosophy and History of Science, Faculty of Science, Charles University, 128 00 Prague 2, Czech Republic
- Center for Theoretical Study, Charles University and Czech Academy of Sciences, Jilská 1, 110 00 Prague 1, Czech Republic
| | - Karel Kleisner
- Department of Philosophy and History of Science, Faculty of Science, Charles University, 128 00 Prague 2, Czech Republic
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5
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Epstein L, Dubois Z, Smith J, Lee Y, Harrington K. Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum. Biosystems 2021; 208:104483. [PMID: 34271083 DOI: 10.1016/j.biosystems.2021.104483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 07/07/2021] [Accepted: 07/07/2021] [Indexed: 11/29/2022]
Abstract
This research addresses the interactions between the unicellular slime mold Physarum polycephalum and a red yeast in a spatial ecosystem over week-long imaging experiments. An inverse relationship between the growth rates of both species is shown, where P. polycephalum has positive growth when the red yeast has a negative growth rate and vice versa. The data also captures successional and oscillatory dynamics between both species. An advanced image analysis methodology for semantic segmentation is used to quantify population density over time, for all components of the ecosystem. We suggest that P. polycephalum is capable of exhibiting a sustainable feeding strategy by depositing a nutritive slime trail, allowing yeast to serve as a periodic food source. This opens a new direction of P. polycephalum research, where the population dynamics of spatial ecosystems can be readily quantified and complex ecological dynamics can be studied.
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Affiliation(s)
- Leo Epstein
- University of Idaho, Moscow, ID, 83844, USA; Max Delbrück Center for Molecular Medicine, Berlin, 13125, Germany
| | | | | | - Yunha Lee
- Center for Advanced Systems Understanding (CASUS), Görlitz, 02826, Germany
| | - Kyle Harrington
- University of Idaho, Moscow, ID, 83844, USA; Max Delbrück Center for Molecular Medicine, Berlin, 13125, Germany.
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Boussard A, Fessel A, Oettmeier C, Briard L, Döbereiner HG, Dussutour A. Adaptive behaviour and learning in slime moulds: the role of oscillations. Philos Trans R Soc Lond B Biol Sci 2021; 376:20190757. [PMID: 33487112 PMCID: PMC7935053 DOI: 10.1098/rstb.2019.0757] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/27/2020] [Indexed: 12/11/2022] Open
Abstract
The slime mould Physarum polycephalum, an aneural organism, uses information from previous experiences to adjust its behaviour, but the mechanisms by which this is accomplished remain unknown. This article examines the possible role of oscillations in learning and memory in slime moulds. Slime moulds share surprising similarities with the network of synaptic connections in animal brains. First, their topology derives from a network of interconnected, vein-like tubes in which signalling molecules are transported. Second, network motility, which generates slime mould behaviour, is driven by distinct oscillations that organize into spatio-temporal wave patterns. Likewise, neural activity in the brain is organized in a variety of oscillations characterized by different frequencies. Interestingly, the oscillating networks of slime moulds are not precursors of nervous systems but, rather, an alternative architecture. Here, we argue that comparable information-processing operations can be realized on different architectures sharing similar oscillatory properties. After describing learning abilities and oscillatory activities of P. polycephalum, we explore the relation between network oscillations and learning, and evaluate the organism's global architecture with respect to information-processing potential. We hypothesize that, as in the brain, modulation of spontaneous oscillations may sustain learning in slime mould. This article is part of the theme issue 'Basal cognition: conceptual tools and the view from the single cell'.
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Affiliation(s)
- Aurèle Boussard
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Adrian Fessel
- Institut für Biophysik, Universität Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany
| | - Christina Oettmeier
- Institut für Biophysik, Universität Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany
| | - Léa Briard
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | | | - Audrey Dussutour
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
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7
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Dussutour A. Learning in single cell organisms. Biochem Biophys Res Commun 2021; 564:92-102. [PMID: 33632547 DOI: 10.1016/j.bbrc.2021.02.018] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 02/02/2021] [Accepted: 02/04/2021] [Indexed: 12/12/2022]
Abstract
The survival of all species requires appropriate behavioral responses to environmental challenges. Learning is one of the key processes to acquire information about the environment and adapt to changing and uncertain conditions. Learning has long been acknowledged in animals from invertebrates to vertebrates but remains a subject of debate in non-animal systems such a plants and single cell organisms. In this review I will attempt to answer the following question: are single cell organisms capable of learning? I will first briefly discuss the concept of learning and argue that the ability to acquire and store information through learning is pervasive and may be found in single cell organisms. Second, by focusing on habituation, the simplest form of learning, I will review a series of experiments showing that single cell organisms such as slime molds and ciliates display habituation and follow most of the criteria adopted by neuroscientists to define habituation. Then I will discuss disputed evidence suggesting that single cell organisms might also undergo more sophisticated forms of learning such as associative learning. Finally, I will stress out that the challenge for the future is less about whether or not to single cell organisms fulfill the definition of learning established from extensive studies in animal systems and more about acknowledging and understanding the range of behavioral plasticity exhibited by such fascinating organisms.
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Affiliation(s)
- Audrey Dussutour
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse, 31062, AD, France.
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8
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Suarez AV, Scharf HM, Reeve HK, Hauber ME. Signal detection, acceptance thresholds and the evolution of animal recognition systems. Philos Trans R Soc Lond B Biol Sci 2020; 375:20190464. [PMID: 32420845 DOI: 10.1098/rstb.2019.0464] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- A V Suarez
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, 515 Morrill Hall, 505 S. Goodwin Avenue, Urbana, IL 61801, USA
| | - H M Scharf
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, 515 Morrill Hall, 505 S. Goodwin Avenue, Urbana, IL 61801, USA
| | - H K Reeve
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY 14853, USA
| | - M E Hauber
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, 515 Morrill Hall, 505 S. Goodwin Avenue, Urbana, IL 61801, USA
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