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Yaney‐Keller A, McIntosh RR, Clarke RH, Reina RD. Closing the air gap: the use of drones for studying wildlife ecophysiology. Biol Rev Camb Philos Soc 2025; 100:1206-1228. [PMID: 39822117 PMCID: PMC12120397 DOI: 10.1111/brv.13181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 12/20/2024] [Accepted: 12/31/2024] [Indexed: 01/19/2025]
Abstract
Techniques for non-invasive sampling of ecophysiological data in wild animals have been developed in response to challenges associated with studying captive animals or using invasive methods. Of these, drones, also known as Unoccupied Aerial Vehicles (UAVs), and their associated sensors, have emerged as a promising tool in the ecophysiology toolkit. In this review, we synthesise research in a scoping review on the use of drones for studying wildlife ecophysiology using the PRISMA-SCr checklist and identify where efforts have been focused and where knowledge gaps remain. We use these results to explore current best practices and challenges and provide recommendations for future use. In 136 studies published since 2010, drones aided studies on wild animal body condition and morphometrics, kinematics and biomechanics, bioenergetics, and wildlife health (e.g. microbiomes, endocrinology, and disease) in both aquatic and terrestrial environments. Focal taxa are biased towards marine mammals, particularly cetaceans. While conducted globally, research is primarily led by institutions based in North America, Oceania, and Europe. The use of drones to obtain body condition and morphometric data through standard colour sensors and single camera photogrammetry predominates. Techniques such as video tracking and thermal imaging have also allowed insights into other aspects of wildlife ecophysiology, particularly when combined with external sampling techniques such as biologgers. While most studies have used commercially available multirotor platforms and standard colour sensors, the modification of drones to collect samples, and integration with external sampling techniques, have allowed multidisciplinary studies to integrate a suite of remote sensing methods more fully. We outline how technological advances for drones will play a key role in the delivery of both novel and improved wildlife ecophysiological data. We recommend that researchers prepare for the influx of drone-assisted advancements in wildlife ecophysiology through multidisciplinary and cross-institutional collaborations. We describe best practices to diversify across species and environments and use current data sources and technologies for more comprehensive results.
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Affiliation(s)
- Adam Yaney‐Keller
- School of Biological Sciences, Monash University25 Rainforest WalkClaytonVictoria3800Australia
| | - Rebecca R. McIntosh
- Research DepartmentPhillip Island Nature Parks154/156 Thompson Avenue, CowesVictoria3922Australia
| | - Rohan H. Clarke
- School of Biological Sciences, Monash University25 Rainforest WalkClaytonVictoria3800Australia
| | - Richard D. Reina
- School of Biological Sciences, Monash University25 Rainforest WalkClaytonVictoria3800Australia
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Fahlman A, Mcknight JC, Blawas AM, West N, Torrente AG, Aoki K. Cardiorespiratory coupling in the bottlenose dolphin ( Tursiops truncatus). Front Physiol 2023; 14:1234432. [PMID: 37811493 PMCID: PMC10558176 DOI: 10.3389/fphys.2023.1234432] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Accepted: 09/11/2023] [Indexed: 10/10/2023] Open
Abstract
Introduction: The bottlenose dolphin (Tursiops truncatus) is an intermittent breather, where the breath begins with an exhalation followed by inhalation and an extended inter-breath interval ranging from 10 to 40 s. Breathing has been shown to alter both the instantaneous heart rate (if H) and stroke volume (iSV) in the bottlenose dolphin, with a transitory ventilatory tachycardia following the breath, and an exponential decrease to a stable if H around 40 beats • min-1 during the inter-breath period. As the total breath duration in the dolphin is around 1 s, it is not possible to assess the contribution of exhalation and inhalation to these changes in cardiac function during normal breathing. Methods: In the current study, we evaluated the if H response by separating expiration and inspiration of a breath, which allowed us to distinguish their respective contribution to the changes in if H. We studied 3 individual male bottlenose dolphins trained to hold their breath between the different respiratory phases (expiration and inhalation). Results: Our data show that inspiration causes an increase in if H, while expiration appears to result in a decrease in if H. Discussion: These data provide improved understanding of the cardiorespiratory coupling in dolphins, and show how both exhalation and inhalation alters if H.
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Affiliation(s)
- A. Fahlman
- Fundación Oceanografic de la Comunidad Valenciana, Gran Vía Marques del Turia 19, Valencia, Spain
- Kolmården Wildlife Park, Kolmården, Sweden
- Global Diving Research SL, Valencia, Spain
| | | | - A. M. Blawas
- Duke University Marine Laboratory, Nicholas School of the Environment Duke University, Beaufort, NC, United States
| | - N. West
- Dolphin Quest, Kahala Resort, Waikoloa, HI, United States
| | - A. G. Torrente
- Institut de Génomique Fonctionnelle, Université de Montpellier, CNRS, INSERM, Montpellier, France
| | - K. Aoki
- Department of Marine Bioscience, Atmosphere and OceanResearch Institute, The University of Tokyo, Chiba, Japan
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Meekan M, Gleiss A. Free-diving sharks. Science 2023; 380:583-584. [PMID: 37167374 DOI: 10.1126/science.adg8452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Hammerhead sharks hold their breath when diving to regulate body temperature.
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Affiliation(s)
- Mark Meekan
- Australian Institute of Marine Science, University of Western Australia, Oceans Institute, MO96, Crawley, WA, Australia
| | - Adrian Gleiss
- Centre for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch University, Murdoch, WA, Australia
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Ehlman SM, Scherer U, Bierbach D, Francisco FA, Laskowski KL, Krause J, Wolf M. Leveraging big data to uncover the eco-evolutionary factors shaping behavioural development. Proc Biol Sci 2023; 290:20222115. [PMID: 36722081 PMCID: PMC9890127 DOI: 10.1098/rspb.2022.2115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Mapping the eco-evolutionary factors shaping the development of animals' behavioural phenotypes remains a great challenge. Recent advances in 'big behavioural data' research-the high-resolution tracking of individuals and the harnessing of that data with powerful analytical tools-have vastly improved our ability to measure and model developing behavioural phenotypes. Applied to the study of behavioural ontogeny, the unfolding of whole behavioural repertoires can be mapped in unprecedented detail with relative ease. This overcomes long-standing experimental bottlenecks and heralds a surge of studies that more finely define and explore behavioural-experiential trajectories across development. In this review, we first provide a brief guide to state-of-the-art approaches that allow the collection and analysis of high-resolution behavioural data across development. We then outline how such approaches can be used to address key issues regarding the ecological and evolutionary factors shaping behavioural development: developmental feedbacks between behaviour and underlying states, early life effects and behavioural transitions, and information integration across development.
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Affiliation(s)
- Sean M. Ehlman
- SCIoI Excellence Cluster, 10587 Berlin, Germany,Faculty of Life Sciences, Humboldt University, 10117 Berlin, Germany,Department of Fish Biology, Fisheries, and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 12587 Berlin, Germany
| | - Ulrike Scherer
- SCIoI Excellence Cluster, 10587 Berlin, Germany,Faculty of Life Sciences, Humboldt University, 10117 Berlin, Germany,Department of Fish Biology, Fisheries, and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 12587 Berlin, Germany
| | - David Bierbach
- SCIoI Excellence Cluster, 10587 Berlin, Germany,Faculty of Life Sciences, Humboldt University, 10117 Berlin, Germany,Department of Fish Biology, Fisheries, and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 12587 Berlin, Germany
| | - Fritz A. Francisco
- SCIoI Excellence Cluster, 10587 Berlin, Germany,Faculty of Life Sciences, Humboldt University, 10117 Berlin, Germany
| | - Kate L. Laskowski
- Department of Evolution and Ecology, University of California – Davis, Davis, CA 95616, USA
| | - Jens Krause
- SCIoI Excellence Cluster, 10587 Berlin, Germany,Faculty of Life Sciences, Humboldt University, 10117 Berlin, Germany,Department of Fish Biology, Fisheries, and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 12587 Berlin, Germany
| | - Max Wolf
- SCIoI Excellence Cluster, 10587 Berlin, Germany,Department of Fish Biology, Fisheries, and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 12587 Berlin, Germany
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Booth CG, Brannan N, Dunlop R, Friedlander A, Isojunno S, Miller P, Quick N, Southall B, Pirotta E. A sampling, exposure and receptor framework for identifying factors that modulate behavioural responses to disturbance in cetaceans. J Anim Ecol 2022; 91:1948-1960. [PMID: 35895847 PMCID: PMC9804311 DOI: 10.1111/1365-2656.13787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 06/26/2022] [Indexed: 01/05/2023]
Abstract
The assessment of behavioural disturbance in cetacean species (e.g. resulting from exposure to anthropogenic sources such as military sonar, seismic surveys, or pile driving) is important for effective conservation and management. Disturbance effects can be informed by Behavioural Response Studies (BRSs), involving either controlled exposure experiments (CEEs) where noise exposure conditions are presented deliberately to meet experimental objectives or in opportunistic contexts where ongoing activities are monitored in a strategic manner. In either context, animal-borne sensors or in situ observations can provide information on individual exposure and disturbance responses. The past 15 years of research have greatly expanded our understanding of behavioural responses to noise, including hundreds of experiments in nearly a dozen cetacean species. Many papers note limited sample sizes, required knowledge of baseline behaviour prior to exposure and the importance of contextual factors modulating behavioural responses, all of which in combination can lead to sampling biases, even for well-designed research programs. It is critical to understand these biases to robustly identify responses. This ensures outcomes of BRSs help inform predictions of how anthropogenic disturbance impacts individuals and populations. Our approach leverages concepts from the animal behaviour literature focused on helping to avoid sampling bias by considering what shapes an animal's response. These factors include social, experience, genetic and natural changes in responsiveness. We developed and applied a modified version of this framework to synthesise current knowledge on cetacean response in the context of effects observed across marine and terrestrial taxa. This new 'Sampling, Exposure, Receptor' framework (SERF) identifies 43 modulating factors, highlights potential biases, and assesses how these vary across selected focal species. In contrast to studies that identified variation in 'Exposure' factors as a key concern, our analysis indicated that factors relating to 'Sampling' (e.g. deploying tags on less evasive individuals, which biases selection of subjects), and 'Receptor' (e.g. health status or coping style) have the greatest potential for weakening the desired broad representativeness of BRSs. Our assessment also highlights how potential biases could be addressed with existing datasets or future developments.
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Affiliation(s)
- Cormac G. Booth
- SMRU Consulting, Scottish Oceans InstituteUniversity of St AndrewsSt AndrewsUK
| | - Naomi Brannan
- Southeast Asia Marine Mammal ResearchHong KongHong Kong
| | - Rebecca Dunlop
- Cetacean Ecology and Acoustics LaboratoryMoreton Bay Research Station and School of Biological SciencesUniversity of QueenslandBrisbaneAustralia
| | - Ari Friedlander
- Southall Environmental Associates, Inc.AptosCaliforniaUSA,University of California, Institute of Marine ScienceSanta CruzCaliforniaUSA
| | - Saana Isojunno
- Sea Mammal Research Unit, Scottish Oceans InstituteUniversity of St AndrewsSt AndrewsUK
| | - Patrick Miller
- Sea Mammal Research Unit, Scottish Oceans InstituteUniversity of St AndrewsSt AndrewsUK
| | - Nicola Quick
- School of Biological and Marine SciencesUniversity of PlymouthPlymouthUK,Nicholas School of the EnvironmentDuke UniversityBeaufortNorth CarolinaUSA
| | - Brandon Southall
- Southall Environmental Associates, Inc.AptosCaliforniaUSA,University of California, Institute of Marine ScienceSanta CruzCaliforniaUSA
| | - Enrico Pirotta
- Centre for Research into Ecological and Environmental ModellingUniversity of St AndrewsSt AndrewsUK
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Kinoshita C, Saito A, Kawai M, Sato K, Sakamoto KQ. A Non-Invasive Heart Rate Measurement Method Is Improved by Placing the Electrodes on the Ventral Side Rather Than the Dorsal in Loggerhead Turtles. Front Physiol 2022; 13:811947. [PMID: 35250617 PMCID: PMC8889138 DOI: 10.3389/fphys.2022.811947] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 01/12/2022] [Indexed: 11/29/2022] Open
Abstract
Heart rate measurement is an essential method for evaluating the physiological status of air-breathing diving animals. However, owing to technical difficulties, many marine animals require an invasive approach to record an electrocardiogram (ECG) in water, limiting the application of this approach in a wide range of marine animals. Recently, a non-invasive system was reported to measure the ECG of hard-shelled sea turtles by pasting the electrodes on the dorsal side of the shell, although the ECG obtained from the moving turtle contains noise produced by muscle contraction. Here, we report that clear ECGs can be obtained by placing the electrodes on the ventral side rather than the dorsal side in loggerhead sea turtles. Using our method, clearer ECG signals were obtained with less electrical noise, even when turtles are swimming. According to the anatomical features, the electrode position on the ventral side is closer to the heart than the dorsal side, minimizing the effects of noise generated by the skeletal muscle. This new biologging technique will elucidate the functioning of the circulatory system of sea turtles during swimming and their adaptabilities to marine environments. This article is part of the theme issue “Methods and Applications in Physio-logging.”
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Affiliation(s)
- Chihiro Kinoshita
- International Coastal Research Center, Atmosphere and Ocean Research Institute, The University of Tokyo, Otsuchi, Japan
- *Correspondence: Chihiro Kinoshita,
| | - Ayaka Saito
- Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan
| | - Megumi Kawai
- Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan
| | - Katsufumi Sato
- Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan
| | - Kentaro Q. Sakamoto
- Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan
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Williams HJ, Shipley JR, Rutz C, Wikelski M, Wilkes M, Hawkes LA. Future trends in measuring physiology in free-living animals. Philos Trans R Soc Lond B Biol Sci 2021; 376:20200230. [PMID: 34176330 PMCID: PMC8237165 DOI: 10.1098/rstb.2020.0230] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/18/2021] [Indexed: 02/07/2023] Open
Abstract
Thus far, ecophysiology research has predominantly been conducted within controlled laboratory-based environments, owing to a mismatch between the recording technologies available for physiological monitoring in wild animals and the suite of behaviours and environments they need to withstand, without unduly affecting subjects. While it is possible to record some physiological variables for free-living animals using animal-attached logging devices, including inertial-measurement, heart-rate and temperature loggers, the field is still in its infancy. In this opinion piece, we review the most important future research directions for advancing the field of 'physiologging' in wild animals, including the technological development that we anticipate will be required, and the fiscal and ethical challenges that must be overcome. Non-invasive, multi-sensor miniature devices are ubiquitous in the world of human health and fitness monitoring, creating invaluable opportunities for animal and human physiologging to drive synergistic advances. We argue that by capitalizing on the research efforts and advancements made in the development of human wearables, it will be possible to design the non-invasive loggers needed by ecophysiologists to collect accurate physiological data from free-ranging animals ethically and with an absolute minimum of impact. In turn, findings have the capacity to foster transformative advances in human health monitoring. Thus, we invite biomedical engineers and researchers to collaborate with the animal-tagging community to drive forward the advancements necessary to realize the full potential of both fields. This article is part of the theme issue 'Measuring physiology in free-living animals (Part II)'.
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Affiliation(s)
- H. J. Williams
- Department of Migration, Max Planck Institute of Animal Behavior, 78315 Radolfzell, Germany
- Department of Biology, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany
| | - J. Ryan Shipley
- Department of Migration, Max Planck Institute of Animal Behavior, 78315 Radolfzell, Germany
- Department of Biology, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany
| | - C. Rutz
- Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews KY16 9TH, UK
| | - M. Wikelski
- Department of Migration, Max Planck Institute of Animal Behavior, 78315 Radolfzell, Germany
- Department of Biology, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany
- Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78457 Konstanz, Germany
| | - M. Wilkes
- Extreme Environments Research Group, University of Portsmouth, Spinnaker Building, Cambridge Road, Portsmouth PO1 2EF, UK
| | - L. A. Hawkes
- Hatherly Laboratories, University of Exeter, College of Life and Environmental Sciences, Exeter EX4 4PS, UK
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Hawkes LA, Fahlman A, Sato K. What is physiologging? Introduction to the theme issue, part 2. Philos Trans R Soc Lond B Biol Sci 2021; 376:20210028. [PMID: 34176329 PMCID: PMC8237167 DOI: 10.1098/rstb.2021.0028] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/19/2021] [Indexed: 01/05/2023] Open
Abstract
The physiological mechanisms by which animals regulate energy expenditure, respond to stimuli and stressors, and maintain homeostasis at the tissue, organ and whole organism levels can be described by 'physiologging'-that is, the use of onboard miniature electronic devices to record physiological metrics of animals in captivity or free-living in the wild. Despite its origins in the 1960s, physiologging has evolved more slowly than its umbrella field of biologging. However, the recording of physiological metrics in free-living animals will be key to solving some of the greatest challenges in biodiversity conservation, issues pertaining to animal health and welfare, and for inspiring future therapeutic strategies for human health. Current physiologging technologies encompass the measurement of physiological variables such as heart rate, brain activity, body temperature, muscle stimulation and dynamic movement, yet future developments will allow for onboard logging of metrics relating to organelle, molecular and genetic function. This article is part of the theme issue 'Measuring physiology in free-living animals (Part II)'.
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Affiliation(s)
- L. A. Hawkes
- University of Exeter, Hatherly Laboratories, Prince of Wales Road, Exeter, EX4 4PS, UK
| | - A. Fahlman
- Global Diving Research Inc. Ottawa ON K2J 5E8, USA
| | - K. Sato
- Atmosphere and Ocean Research Institute, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba Prefecture 277-8564, Japan
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