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Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJ. Maribacter litoralis sp. nov. a marine bacterium isolated from seashore. Int J Syst Evol Microbiol 2018; 68:3471-3478. [PMID: 30222095 DOI: 10.1099/ijsem.0.003011] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A novel Gram-stain-negative, moderately halophilic and aerobic bacterium, designated strain SDRB-Phe2T, was isolated from coastal sediment of the yellow sea in Sindu-ri, Republic of Korea. Cells were oxidase-positive, catalase-positive, rod-shaped and surrounded by a capsule with gliding motility. Colonies were yellow-coloured, circular, pulvinate with entire margins. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SDRB-Phe2T formed a distinct lineage within the genus Maribacter of the family Flavobacteriaceae. Stain SDRB-Phe2T exhibited 16S rRNA gene sequence similarity values of 97.1-98.9 % to the type strains of Maribacterstanieri, Maribacterspongiicola, Maribacter forsetii, Maribacter dokdonensis, Maribacter aquivivus, Maribactercaenipelagi, Maribacterlitorisediminis, Maribactersedimenticola, Maribacterulvicola, Maribacter confluentis and Maribacter orientalis, and of 94.8-96.7 % to the type strains of the other species of the genus Maribacter. Strain SDRB-Phe2T contained MK-6 as the predominant respiratory quinone and iso-C15 : 1 G, iso-C15 : 0 and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) as the major fatty acids. The polar lipids of strain SDRB-Phe2T were phosphatidylethanolamine, one unidentified amino lipid and two unidentified lipids. The DNA G+C content was 36.2 mol%. DNA-DNA relatedness values of strain SDRB-Phe2T to the type strains of the 11 phylogenetically related species of the genus Maribacter were 21.9-38.6 %. On the basis of the phenotypic features, phylogenetic and DNA-DNA hybridization analyses presented here, strain SDRB-Phe2T (=JCM 32373T=KCTC 62273T=DSM 106042T) represents a novel species of the genus Maribacter, for which the name Maribacterlitoralis sp. nov. is proposed.
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Affiliation(s)
- Dong Wan Lee
- 1Division of Environmental Science and Ecological Engineering, College of Life Science and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Hanbyul Lee
- 1Division of Environmental Science and Ecological Engineering, College of Life Science and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Bong-Oh Kwon
- 2School of Earth and Environmental Science and Research Institute of Oceanography, Seoul National University, Seoul, Republic of Korea
| | - Jong Seong Khim
- 2School of Earth and Environmental Science and Research Institute of Oceanography, Seoul National University, Seoul, Republic of Korea
| | - Un Hyuk Yim
- 3Oil and POPs Research Group, Korea Institute of Ocean Science and Technology, Geoje, Republic of Korea
| | - Hongjae Park
- 4Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Byeonghyeok Park
- 4Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - In-Geol Choi
- 4Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Beom Seok Kim
- 5Division of Biotechnology, College of Life Science and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Jae-Jin Kim
- 1Division of Environmental Science and Ecological Engineering, College of Life Science and Biotechnology, Korea University, Seoul 02841, Republic of Korea
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Kang H, Cha I, Kim H, Joh K. Maribacter maritimus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2018; 68:2431-2436. [PMID: 29893666 DOI: 10.1099/ijsem.0.002843] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A novel Gram-stain-negative, motile by gliding and straight rod-shaped bacterial strain, designated HMF3635T, was isolated from seawater of the East Sea, Republic of Korea. Strain HMF3635T grew optimally on marine agar at 30 °C, pH 7.0-8.0 and 2.0 % NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain HMF3635T belonged to the genus Maribacter and was most closely related to Maribacter arenosus CAU 1321T (96.4 % sequence similarity) and Maribacter polysiphoniae KMM 6151T (96.0 %). The major fatty acids were iso-C15 : 0, iso-C15 : 1 G and iso-C17 : 0 3-OH. The only respiratory quinone was menaquinone 6. The major polar lipids were phosphatidylethanolamine, four unidentified aminolipids, one unidentified phospholipid and three unidentified polar lipids. The DNA G+C content was 38.7 mol%. On the basis of the evidence presented in this study, strain HMF3635T represents a novel species of the genus Maribacter, for which the name Maribacter maritimus sp. nov. is proposed. The type strain of the species is strain HMF3635T (=KCTC 52399T=NBRC 112671T).
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Affiliation(s)
- Heeyoung Kang
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
| | - Inseong Cha
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
| | - Haneul Kim
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
| | - Kiseong Joh
- Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 17035, Republic of Korea
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Fang C, Wu YH, Xamxidin M, Wang CS, Xu XW. Maribacter cobaltidurans sp. nov., a heavy-metal-tolerant bacterium isolated from deep-sea sediment. Int J Syst Evol Microbiol 2017; 67:5261-5267. [DOI: 10.1099/ijsem.0.002458] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Chen Fang
- Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China
| | - Yue-Hong Wu
- Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China
| | - Maripat Xamxidin
- Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China
| | - Chun-Sheng Wang
- Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China
| | - Xue-Wei Xu
- Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China
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Jin M, Kim M, Kim JY, Song HS, Cha IT, Roh SW, Lee SJ. Maribacter pelagius sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2017; 67:3834-3839. [PMID: 28879842 DOI: 10.1099/ijsem.0.002203] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-stain-negative, gliding, non-endospore-forming and slightly halophilic bacterial strain, CBA3204T, was isolated from seawater and characterized by polyphasic taxonomic analysis. Phylogenetic analysis based on 16S rRNA sequences revealed that strain CBA3204T formed a distinct lineage within the family Flavobacteriaceae. The 16S rRNA sequences of strain CBA3204T had a sequence similarity level of 96.96 % to Maribacter arcticus KOPRI 20941T as the nearest phylogenetic neighbour. The strain grew optimally at 25-30 °C and in the presence of 2-4 % (w/v) NaCl. The dominant menaquinone was MK-6 and the major fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH and iso-C15 : 1 G. The DNA G+C content was 35.1 mol%. There were some differences in phenotypic properties among strain CBA3204T and other Maribacter species. On the basis of polyphasic analysis containing phenotypic, phylogenetic and chemotaxonomic data, strain CBA3204T (=KACC 17671T=JCM 19533T) is proposed as a novel species Maribacter pelagius sp. nov.
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Affiliation(s)
- Minwoo Jin
- Department of Biology, Kyung Hee University, Seoul 02447, Republic of Korea
| | - Minwook Kim
- Department of Biology, Kyung Hee University, Seoul 02447, Republic of Korea
| | - Joon Yong Kim
- Department of Biology, Kyung Hee University, Seoul 02447, Republic of Korea.,Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Republic of Korea
| | - Hye Seon Song
- Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Republic of Korea
| | - In-Tae Cha
- Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Republic of Korea.,Present address: Division of Bioengineering, Incheon National University, Incheon 22012, Republic of Korea
| | - Seong Woon Roh
- Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Republic of Korea
| | - Sung-Jae Lee
- Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 02447, Republic of Korea.,Department of Biology, Kyung Hee University, Seoul 02447, Republic of Korea
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Chen C, Su Y, Tao T, Fu G, Zhang C, Sun C, Zhang X, Wu M. Maripseudobacter aurantiacus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a sedimentation basin. Int J Syst Evol Microbiol 2017; 67:778-783. [DOI: 10.1099/ijsem.0.001580] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Can Chen
- Ocean College, Zhejiang University, Hangzhou 310058, PR China
| | - Yue Su
- Ocean College, Zhejiang University, Hangzhou 310058, PR China
| | - Tianyi Tao
- College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, PR China
| | - Geyi Fu
- Ocean College, Zhejiang University, Hangzhou 310058, PR China
| | - Chongya Zhang
- Ocean College, Zhejiang University, Hangzhou 310058, PR China
| | - Cong Sun
- College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, PR China
| | - Xinqi Zhang
- School of Forestry and Biotechnology, Zhejiang Agriculture and Forestry University, Lin’an 311300, PR China
| | - Min Wu
- Ocean College, Zhejiang University, Hangzhou 310058, PR China
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Yoon J, Kasai H. Aurantibacter crassamenti gen. nov., sp. nov., a bacterium isolated from marine sediment. Arch Microbiol 2016; 199:85-91. [PMID: 27553649 DOI: 10.1007/s00203-016-1280-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Revised: 07/26/2016] [Accepted: 08/16/2016] [Indexed: 11/29/2022]
Abstract
A Gram-stain-negative, strictly aerobic, orange-colored, rod-shaped, chemoheterotrophic bacterium, designated HG732T, was isolated from marine sediment in Japan. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the novel marine strain was affiliated with the family Flavobacteriaceae of the phylum Bacteroidetes and that it shared the highest (94.1 %) sequence similarity with Kriegella aquimaris KMM 3665T. The strain could be differentiated phenotypically from related members of the family Flavobacteriaceae. Major fatty acids of strain HG732T were iso-C15:1 G, iso-C15:0 and iso-C17:0 3-OH. The polar lipid profile consisted of phosphatidylglycerol, three unidentidied aminolipids and two unidentified lipids. The DNA G+C content of the strain was determined to be 35.2 mol%, and the major respiratory quinone was identified as menaquinone 6 (MK-6). From the distinct phylogenetic position and combination of genotypic and phenotypic characteristics, the strain is considered to represent a novel genus in the family Flavobacteriaceae, for which the name Aurantibacter crassamenti gen. nov., sp. nov. is proposed. The type strain of A. crassamenti gen. nov., sp. nov. is HG732T (= KCTC 52207T = NBRC 112211T).
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Affiliation(s)
- Jaewoo Yoon
- College of Pharmacy, Keimyung University, 1095 Dalgubeoldaero, Dalseo-Gu, Daegu, 42601, Republic of Korea.
| | - Hiroaki Kasai
- Marine Biosciences Kamaishi Research Laboratory, Kitasato University, 160-4, Utou, Okirai, Sanriku-cho, Ofunato, Iwate, 022-0101, Japan
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Park S, Jung YT, Won SM, Yoon JH. Maribacter litorisediminis sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 2016; 66:4236-4242. [DOI: 10.1099/ijsem.0.001341] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Sooyeon Park
- Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, South Korea
| | - Yong-Taek Jung
- Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, South Korea
- University of Science and Technology (UST), 113 Gwahak-ro, Yuseong-gu, Daejeon, South Korea
| | - Sung-Min Won
- Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, South Korea
| | - Jung-Hoon Yoon
- Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, South Korea
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Thongphrom C, Kim JH, Kim W. Maribacter arenosus sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2016; 66:4826-4831. [PMID: 27542975 DOI: 10.1099/ijsem.0.001436] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-staining-negative, non-spore-forming, non-gliding, aerobic bacterial strain, designated CAU 1321T was isolated from marine sediment in Incheon, South Korea. The strain's taxonomic position was investigated using a polyphasic approach. CAU 1321T grew optimally at 30 °C and at pH 8 in the presence of 1 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that CAU 1321T represented a member of the genus Maribacter, closely related to Maribacter polysiphoniae KCTC 22021T (similarity 98.0 %). The strain contained MK-6 as the predominant menaquinone and iso-C15 : 0, iso-C17 : 0 3-OH, and iso-C15 : 1 G as the major fatty acids. The polar lipids of CAU 1321T consisted of phosphatidylethanolamine, one unidentified aminoglycolipid, five unidentified aminolipids, two unidentified aminophospholipids, two unidentified glycolipids and three unidentified lipids. The DNA G+C content was 40.6 mol% and the level of DNA-DNA relatedness between CAU 1321T and the most closely related strain, M. polysiphoniae KCTC 22021T was 25.2 %. On the basis of phenotypic and chemotaxonomic properties, and phylogenetic inference, CAU 1321T is considered to represent a novel species of the genus Maribacter, for which the name Maribacter arenosus sp. nov. is proposed. The type strain is CAU 1321T (=KCTC 52191T=NBRC 111990T).
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Affiliation(s)
- Chutimon Thongphrom
- Department of Microbiology, Chung-Ang University College of Medicine, Seoul, Republic of Korea
| | - Jong-Hwa Kim
- Department of Microbiology, Chung-Ang University College of Medicine, Seoul, Republic of Korea
| | - Wonyong Kim
- Department of Microbiology, Chung-Ang University College of Medicine, Seoul, Republic of Korea
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Yoon J, Adachi K, Kasai H. Spongiimicrobium salis gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae isolated from a marine sponge. Arch Microbiol 2016; 198:663-70. [DOI: 10.1007/s00203-016-1227-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2016] [Revised: 04/11/2016] [Accepted: 04/16/2016] [Indexed: 10/21/2022]
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