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For: Chalker DL, Meyer E, Mochizuki K. Epigenetics of ciliates. Cold Spring Harb Perspect Biol 2013;5:a017764. [PMID: 24296171 DOI: 10.1101/cshperspect.a017764] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Number Cited by Other Article(s)
1
Cai X, Zhai Z, Noto T, Dong G, Wang X, Liucong M, Liu Y, Agreiter C, Loidl J, Mochizuki K, Tian M. A specialized TFIIB is required for transcription of transposon-targeting noncoding RNAs. Nucleic Acids Res 2025;53:gkaf427. [PMID: 40377217 PMCID: PMC12082453 DOI: 10.1093/nar/gkaf427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Revised: 04/14/2025] [Accepted: 05/07/2025] [Indexed: 05/18/2025]  Open
2
Ahsan R, Maurer-Alcalá XX, Katz LA. Genome content reorganization in the non-model ciliate Chilodonella uncinata: insights into nuclear architecture, DNA content, and chromosome fragmentation during macronuclear development. mSphere 2025:e0007525. [PMID: 40340440 DOI: 10.1128/msphere.00075-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2025] [Accepted: 04/09/2025] [Indexed: 05/10/2025]  Open
3
Obuse C, Nakayama JI. Functional involvement of RNAs and intrinsically disordered proteins in the assembly of heterochromatin. Biochim Biophys Acta Gen Subj 2025;1869:130790. [PMID: 40057003 DOI: 10.1016/j.bbagen.2025.130790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2025] [Revised: 02/28/2025] [Accepted: 03/05/2025] [Indexed: 04/29/2025]
4
Jiang Y, Chen X, Wang C, Lyu L, Al-Farraj SA, Stover NA, Gao F. Genes and proteins expressed at different life cycle stages in the model protist Euplotes vannus revealed by both transcriptomic and proteomic approaches. SCIENCE CHINA. LIFE SCIENCES 2025;68:232-248. [PMID: 39276255 DOI: 10.1007/s11427-023-2605-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 04/15/2024] [Indexed: 09/16/2024]
5
Ahsan R, Maurer-Alcalá XX, Katz LA. Genome content in the non-model ciliate Chilodonella uncinata: insights into nuclear architecture, gene-sized chromosomes among the total DNA in their somatic macronuclei during their development. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.13.623465. [PMID: 39605396 PMCID: PMC11601529 DOI: 10.1101/2024.11.13.623465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2024]
6
Seah BKB, Singh A, Vetter DE, Emmerich C, Peters M, Soltys V, Huettel B, Swart EC. Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus. Proc Natl Acad Sci U S A 2024;121:e2400503121. [PMID: 39298487 PMCID: PMC11441545 DOI: 10.1073/pnas.2400503121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 08/08/2024] [Indexed: 09/21/2024]  Open
7
Shehzada S, Noto T, Saksouk J, Mochizuki K. A SUMO E3 ligase promotes long non-coding RNA transcription to regulate small RNA-directed DNA elimination. eLife 2024;13:e95337. [PMID: 38197489 PMCID: PMC10830130 DOI: 10.7554/elife.95337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 01/03/2024] [Indexed: 01/11/2024]  Open
8
Bétermier M, Klobutcher LA, Orias E. Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends. Microbiol Mol Biol Rev 2023;87:e0018422. [PMID: 38009915 PMCID: PMC10732028 DOI: 10.1128/mmbr.00184-22] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]  Open
9
The Conjusome-A Transient Organelle Linking Genome Rearrangements in the Parental and Developing Macronuclei. Microorganisms 2023;11:microorganisms11020418. [PMID: 36838383 PMCID: PMC9962563 DOI: 10.3390/microorganisms11020418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 01/27/2023] [Accepted: 02/03/2023] [Indexed: 02/10/2023]  Open
10
Singh M, Seah BK, Emmerich C, Singh A, Woehle C, Huettel B, Byerly A, Stover NA, Sugiura M, Harumoto T, Swart EC. Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma. Proc Natl Acad Sci U S A 2023;120:e2213887120. [PMID: 36669098 PMCID: PMC9942806 DOI: 10.1073/pnas.2213887120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 12/06/2022] [Indexed: 01/21/2023]  Open
11
Seah BK, Singh M, Emmerich C, Singh A, Woehle C, Huettel B, Byerly A, Stover NA, Sugiura M, Harumoto T, Swart EC. MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma. Proc Natl Acad Sci U S A 2023;120:e2213985120. [PMID: 36669106 PMCID: PMC9942856 DOI: 10.1073/pnas.2213985120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 12/06/2022] [Indexed: 01/21/2023]  Open
12
Zhang L, Cervantes MD, Pan S, Lindsley J, Dabney A, Kapler GM. Transcriptome analysis of the binucleate ciliate Tetrahymena thermophila with asynchronous nuclear cell cycles. Mol Biol Cell 2023;34:rs1. [PMID: 36475712 PMCID: PMC9930529 DOI: 10.1091/mbc.e22-08-0326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
13
Wei F, Pan B, Diao J, Wang Y, Sheng Y, Gao S. The micronuclear histone H3 clipping in the unicellular eukaryote Tetrahymena thermophila. MARINE LIFE SCIENCE & TECHNOLOGY 2022;4:584-594. [PMID: 37078088 PMCID: PMC10077241 DOI: 10.1007/s42995-022-00151-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 10/07/2022] [Indexed: 05/02/2023]
14
Tian M, Cai X, Liu Y, Liucong M, Howard-Till R. A practical reference for studying meiosis in the model ciliate Tetrahymena thermophila. MARINE LIFE SCIENCE & TECHNOLOGY 2022;4:595-608. [PMID: 37078080 PMCID: PMC10077211 DOI: 10.1007/s42995-022-00149-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Accepted: 09/28/2022] [Indexed: 05/03/2023]
15
Wang C, Solberg T, Maurer-Alcalá XX, Swart EC, Gao F, Nowacki M. A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing. Cell Rep 2022;40:111263. [PMID: 36001962 PMCID: PMC10073204 DOI: 10.1016/j.celrep.2022.111263] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 06/27/2022] [Accepted: 08/04/2022] [Indexed: 01/04/2023]  Open
16
Smith SA, Santoferrara LF, Katz LA, McManus GB. Genome architecture used to supplement species delineation in two cryptic marine ciliates. Mol Ecol Resour 2022;22:2880-2896. [PMID: 35675173 DOI: 10.1111/1755-0998.13664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 05/06/2022] [Accepted: 05/26/2022] [Indexed: 11/30/2022]
17
Plattner H. Ciliate Research. From Myth to Trendsetting Science. J Eukaryot Microbiol 2022;69:e12926. [PMID: 35608570 DOI: 10.1111/jeu.12926] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 05/18/2022] [Accepted: 05/18/2022] [Indexed: 11/28/2022]
18
Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements. Dev Cell 2022;57:1037-1052.e8. [DOI: 10.1016/j.devcel.2022.03.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 02/10/2022] [Accepted: 03/21/2022] [Indexed: 12/30/2022]
19
Ahsan R, Blanche W, Katz LA. Macronuclear development in ciliates, with a focus on nuclear architecture. J Eukaryot Microbiol 2022;69:e12898. [PMID: 35178799 DOI: 10.1111/jeu.12898] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 01/20/2022] [Accepted: 02/14/2022] [Indexed: 11/30/2022]
20
Vijayanathan M, Trejo-Arellano MG, Mozgová I. Polycomb Repressive Complex 2 in Eukaryotes-An Evolutionary Perspective. EPIGENOMES 2022;6:3. [PMID: 35076495 PMCID: PMC8788455 DOI: 10.3390/epigenomes6010003] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 01/12/2022] [Accepted: 01/12/2022] [Indexed: 12/23/2022]  Open
21
Zangarelli C, Arnaiz O, Bourge M, Gorrichon K, Jaszczyszyn Y, Mathy N, Escoriza L, Bétermier M, Régnier V. Developmental timing of programmed DNA elimination in Paramecium tetraurelia recapitulates germline transposon evolutionary dynamics. Genome Res 2022;32:2028-2042. [PMID: 36418061 PMCID: PMC9808624 DOI: 10.1101/gr.277027.122] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 11/11/2022] [Indexed: 11/24/2022]
22
Catania F, Rothering R, Vitali V. One Cell, Two Gears: Extensive Somatic Genome Plasticity Accompanies High Germline Genome Stability in Paramecium. Genome Biol Evol 2021;13:6443145. [PMID: 34849843 PMCID: PMC8670300 DOI: 10.1093/gbe/evab263] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/22/2021] [Indexed: 12/15/2022]  Open
23
Seah BKB, Swart EC. BleTIES: annotation of natural genome editing in ciliates using long read sequencing. Bioinformatics 2021;37:3929-3931. [PMID: 34487139 PMCID: PMC11301610 DOI: 10.1093/bioinformatics/btab613] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 08/18/2021] [Indexed: 01/10/2023]  Open
24
Weiner AKM, Cerón-Romero MA, Yan Y, Katz LA. Phylogenomics of the Epigenetic Toolkit Reveals Punctate Retention of Genes across Eukaryotes. Genome Biol Evol 2021;12:2196-2210. [PMID: 33049043 DOI: 10.1093/gbe/evaa198] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/15/2020] [Indexed: 12/17/2022]  Open
25
Lemoine M. The Evolution of the Hallmarks of Aging. Front Genet 2021;12:693071. [PMID: 34512720 PMCID: PMC8427668 DOI: 10.3389/fgene.2021.693071] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 07/28/2021] [Indexed: 12/12/2022]  Open
26
Loidl J. Tetrahymena meiosis: Simple yet ingenious. PLoS Genet 2021;17:e1009627. [PMID: 34264933 PMCID: PMC8282021 DOI: 10.1371/journal.pgen.1009627] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
27
Xu J, Zhao X, Mao F, Basrur V, Ueberheide B, Chait BT, Allis CD, Taverna SD, Gao S, Wang W, Liu Y. A Polycomb repressive complex is required for RNAi-mediated heterochromatin formation and dynamic distribution of nuclear bodies. Nucleic Acids Res 2021;49:5407-5425. [PMID: 33412588 PMCID: PMC8191774 DOI: 10.1093/nar/gkaa1262] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 12/02/2020] [Accepted: 01/04/2021] [Indexed: 01/17/2023]  Open
28
New contribution to epigenetic studies: Isolation of micronuclei with high purity and DNA integrity in the model ciliated protist, Tetrahymena thermophila. Eur J Protistol 2021;80:125804. [PMID: 34062315 DOI: 10.1016/j.ejop.2021.125804] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 03/31/2021] [Accepted: 05/04/2021] [Indexed: 10/24/2022]
29
Weiner AKM, Katz LA. Epigenetics as Driver of Adaptation and Diversification in Microbial Eukaryotes. Front Genet 2021;12:642220. [PMID: 33796133 PMCID: PMC8007921 DOI: 10.3389/fgene.2021.642220] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 02/15/2021] [Indexed: 11/17/2022]  Open
30
Sawka-Gądek N, Potekhin A, Singh DP, Grevtseva I, Arnaiz O, Penel S, Sperling L, Tarcz S, Duret L, Nekrasova I, Meyer E. Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species. Genome Biol Evol 2021;13:evaa258. [PMID: 33313646 PMCID: PMC7900874 DOI: 10.1093/gbe/evaa258] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/09/2020] [Indexed: 12/15/2022]  Open
31
Smith JJ, Timoshevskiy VA, Saraceno C. Programmed DNA Elimination in Vertebrates. Annu Rev Anim Biosci 2020;9:173-201. [PMID: 32986476 DOI: 10.1146/annurev-animal-061220-023220] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
32
Ricci F, Luporini P, Alimenti C, Vallesi A. Functional chimeric genes in ciliates: An instructive case from Euplotes raikovi. Gene 2020;767:145186. [PMID: 32998045 DOI: 10.1016/j.gene.2020.145186] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 09/09/2020] [Accepted: 09/23/2020] [Indexed: 11/29/2022]
33
Wang Y, Jiang Y, Liu Y, Li Y, Katz LA, Gao F, Yan Y. Comparative Studies on the Polymorphism and Copy Number Variation of mtSSU rDNA in Ciliates (Protista, Ciliophora): Implications for Phylogenetic, Environmental, and Ecological Research. Microorganisms 2020;8:E316. [PMID: 32106521 PMCID: PMC7142639 DOI: 10.3390/microorganisms8030316] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 01/21/2023]  Open
34
Ninova M, Fejes Tóth K, Aravin AA. The control of gene expression and cell identity by H3K9 trimethylation. Development 2019;146:dev181180. [PMID: 31540910 PMCID: PMC6803365 DOI: 10.1242/dev.181180] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
35
Alderman MH, Xiao AZ. N(6)-Methyladenine in eukaryotes. Cell Mol Life Sci 2019;76:2957-2966. [PMID: 31143960 PMCID: PMC6857450 DOI: 10.1007/s00018-019-03146-w] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 05/10/2019] [Indexed: 12/15/2022]
36
Tian M, Mochizuki K, Loidl J. Non-coding RNA Transcription in Tetrahymena Meiotic Nuclei Requires Dedicated Mediator Complex-Associated Proteins. Curr Biol 2019;29:2359-2370.e5. [PMID: 31280995 DOI: 10.1016/j.cub.2019.05.038] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 04/24/2019] [Accepted: 05/15/2019] [Indexed: 12/22/2022]
37
Diversification of small RNA amplification mechanisms for targeting transposon-related sequences in ciliates. Proc Natl Acad Sci U S A 2019;116:14639-14644. [PMID: 31262823 DOI: 10.1073/pnas.1903491116] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
38
Zhao X, Xiong J, Mao F, Sheng Y, Chen X, Feng L, Dui W, Yang W, Kapusta A, Feschotte C, Coyne RS, Miao W, Gao S, Liu Y. RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena. Genes Dev 2019;33:348-364. [PMID: 30808657 PMCID: PMC6411011 DOI: 10.1101/gad.320796.118] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Accepted: 01/02/2019] [Indexed: 12/30/2022]
39
Chalker DL. Transgenerational Inheritance: Parental Guidance Suggested. Curr Biol 2018;28:R702-R704. [PMID: 29920263 DOI: 10.1016/j.cub.2018.05.041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
40
Iwamoto M, Mori C, Osakada H, Koujin T, Hiraoka Y, Haraguchi T. Nuclear localization signal targeting to macronucleus and micronucleus in binucleated ciliate Tetrahymena thermophila. Genes Cells 2018;23:568-579. [PMID: 29882620 DOI: 10.1111/gtc.12602] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 04/27/2018] [Accepted: 05/08/2018] [Indexed: 01/25/2023]
41
Noto T, Mochizuki K. Whats, hows and whys of programmed DNA elimination in Tetrahymena. Open Biol 2018;7:rsob.170172. [PMID: 29021213 PMCID: PMC5666084 DOI: 10.1098/rsob.170172] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Accepted: 09/12/2017] [Indexed: 12/20/2022]  Open
42
Noto T, Mochizuki K. Small RNA-Mediated trans-Nuclear and trans-Element Communications in Tetrahymena DNA Elimination. Curr Biol 2018;28:1938-1949.e5. [DOI: 10.1016/j.cub.2018.04.071] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Revised: 04/17/2018] [Accepted: 04/19/2018] [Indexed: 10/14/2022]
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Qiu GH, Huang C, Zheng X, Yang X. The protective function of noncoding DNA in genome defense of eukaryotic male germ cells. Epigenomics 2018;10:499-517. [PMID: 29616594 DOI: 10.2217/epi-2017-0103] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
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Jose AM. Replicating and Cycling Stores of Information Perpetuate Life. Bioessays 2018;40:e1700161. [PMID: 29493806 PMCID: PMC7303024 DOI: 10.1002/bies.201700161] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Revised: 01/06/2018] [Indexed: 12/12/2022]
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Minkina O, Hunter CP. Intergenerational Transmission of Gene Regulatory Information in Caenorhabditis elegans. Trends Genet 2017;34:54-64. [PMID: 29103876 DOI: 10.1016/j.tig.2017.09.012] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Revised: 09/28/2017] [Accepted: 09/29/2017] [Indexed: 01/12/2023]
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Feng L, Wang G, Hamilton EP, Xiong J, Yan G, Chen K, Chen X, Dui W, Plemens A, Khadr L, Dhanekula A, Juma M, Dang HQ, Kapler GM, Orias E, Miao W, Liu Y. A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement. Nucleic Acids Res 2017;45:9481-9502. [PMID: 28934495 PMCID: PMC5766162 DOI: 10.1093/nar/gkx652] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2017] [Accepted: 07/15/2017] [Indexed: 12/20/2022]  Open
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Orias E, Singh DP, Meyer E. Genetics and Epigenetics of Mating Type Determination in Paramecium and Tetrahymena. Annu Rev Microbiol 2017;71:133-156. [PMID: 28715961 DOI: 10.1146/annurev-micro-090816-093342] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Arnaiz O, Van Dijk E, Bétermier M, Lhuillier-Akakpo M, de Vanssay A, Duharcourt S, Sallet E, Gouzy J, Sperling L. Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression. BMC Genomics 2017;18:483. [PMID: 28651633 PMCID: PMC5485702 DOI: 10.1186/s12864-017-3887-z] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Accepted: 06/21/2017] [Indexed: 12/22/2022]  Open
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Pilling OA, Rogers AJ, Gulla-Devaney B, Katz LA. Insights into transgenerational epigenetics from studies of ciliates. Eur J Protistol 2017;61:366-375. [PMID: 28689743 DOI: 10.1016/j.ejop.2017.05.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Revised: 05/06/2017] [Accepted: 05/09/2017] [Indexed: 12/23/2022]
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Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools. Genetics 2017;203:649-65. [PMID: 27270699 DOI: 10.1534/genetics.114.169748] [Citation(s) in RCA: 80] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 04/08/2016] [Indexed: 12/12/2022]  Open
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