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Andriani RT, Kubo Y. Voltage-clamp fluorometry analysis of structural rearrangements of ATP-gated channel P2X2 upon hyperpolarization. eLife 2021; 10:65822. [PMID: 34009126 PMCID: PMC8184218 DOI: 10.7554/elife.65822] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 05/18/2021] [Indexed: 12/17/2022] Open
Abstract
Gating of the ATP-activated channel P2X2 has been shown to be dependent not only on [ATP] but also on membrane voltage, despite the absence of a canonical voltage-sensor domain. We aimed to investigate the structural rearrangements of rat P2X2 during ATP- and voltage-dependent gating, using a voltage-clamp fluorometry technique. We observed fast and linearly voltage-dependent fluorescence intensity (F) changes at Ala337 and Ile341 in the TM2 domain, which could be due to the electrochromic effect, reflecting the presence of a converged electric field. We also observed slow and voltage-dependent F changes at Ala337, which reflect structural rearrangements. Furthermore, we determined that the interaction between Ala337 in TM2 and Phe44 in TM1, which are in close proximity in the ATP-bound open state, is critical for activation. Taking these results together, we propose that the voltage dependence of the interaction within the converged electric field underlies the voltage-dependent gating.
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Affiliation(s)
- Rizki Tsari Andriani
- Division of Biophysics and Neurobiology, National Institute for Physiological Sciences, Aichi, Japan.,Department of Physiological Sciences, The Graduate University for Advanced Studies, School of Life Science, Kanagawa, Japan
| | - Yoshihiro Kubo
- Division of Biophysics and Neurobiology, National Institute for Physiological Sciences, Aichi, Japan.,Department of Physiological Sciences, The Graduate University for Advanced Studies, School of Life Science, Kanagawa, Japan
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Noon SL, D'Annibale DA, Schwimmer MH, Shiels J, Arin J, Durelle J, Newton KP, Goyal NP, Schwimmer JB. Incidence of Depression and Anxiety in a Cohort of Adolescents With Nonalcoholic Fatty Liver Disease. J Pediatr Gastroenterol Nutr 2021; 72:579-583. [PMID: 33346572 PMCID: PMC8815421 DOI: 10.1097/mpg.0000000000003024] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
OBJECTIVES To determine the incidence of clinically diagnosed depression and anxiety in adolescents with nonalcoholic fatty liver disease (NAFLD). METHODS This was a prospective, longitudinal cohort study between January 1, 2012 and July 1, 2018 conducted in a Children's Hospital Pediatric Gastroenterology Clinic. Participants included adolescents 12 to 17 years old at baseline with biopsy-confirmed NAFLD. The primary outcomes were having depression and/or anxiety based upon a clinical diagnosis established by a physician or psychologist. The rates of depression and anxiety were measured at baseline and longitudinally throughout follow-up. RESULTS A total of 160 adolescents with NAFLD were followed for a mean of 3.8 years. At baseline, 8.1% had a diagnosis of depression. During follow-up, an additional 9.5% (95% confidence interval, 4.7-14.3) developed depression. The incidence density of depression was 27 new cases per 1000 person-years at risk. In adolescents with NAFLD, 6.3% had anxiety at baseline and 6.7% (95% confidence interval, 2.6-10.7) developed anxiety during follow-up. The incidence density of anxiety was 18 new cases per 1000 person-years at risk. The change in alanine aminotransferase was significantly worse for adolescents with NAFLD who developed depression compared to those who did not develop depression (P < 0.01). CONCLUSIONS Adolescents with NAFLD had a high incidence of clinically diagnosed depression and anxiety. The rates were higher than expected relative to the available data in the general population. Addressing this mental health burden will require efforts at both the patient level and the systems level.
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Affiliation(s)
- Sheila L Noon
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- University of California Berkeley, Berkeley, CA
| | - Danielle A D'Annibale
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- Georgetown University School of Medicine, Washington, DC
| | - Melanie H Schwimmer
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- Amherst College, Amherst, MA
| | - Jacqueline Shiels
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- Department of Psychiatry, Kaiser Permanente, Antioch
| | - Jennifer Arin
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
| | - Janis Durelle
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
| | - Kimberly P Newton
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- Department of Gastroenterology, Rady Children's Hospital, San Diego, CA
| | - Nidhi P Goyal
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- Department of Gastroenterology, Rady Children's Hospital, San Diego, CA
| | - Jeffrey B Schwimmer
- Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego School of Medicine, La Jolla
- Department of Gastroenterology, Rady Children's Hospital, San Diego, CA
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Mangus LM, França MS, Shivaprasad HL, Wolf JC. Research-Relevant Background Lesions and Conditions in Common Avian and Aquatic Species. ILAR J 2021; 62:169-202. [PMID: 33782706 DOI: 10.1093/ilar/ilab008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Revised: 11/18/2020] [Accepted: 12/20/2020] [Indexed: 12/20/2022] Open
Abstract
Non-mammalian vertebrates including birds, fish, and amphibians have a long history of contributing to ground-breaking scientific discoveries. Because these species offer several experimental advantages over higher vertebrates and share extensive anatomic and genetic homology with their mammalian counterparts, they remain popular animal models in a variety of fields such as developmental biology, physiology, toxicology, drug discovery, immunology, toxicology, and infectious disease. As with all animal models, familiarity with the anatomy, physiology, and spontaneous diseases of these species is necessary for ensuring animal welfare, as well as accurate interpretation and reporting of study findings. Working with avian and aquatic species can be especially challenging in this respect due to their rich diversity and array of unique adaptations. Here, we provide an overview of the research-relevant anatomic features, non-infectious conditions, and infectious diseases that impact research colonies of birds and aquatic animals, including fish and Xenopus species.
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Affiliation(s)
- Lisa M Mangus
- Department of Molecular and Comparative Pathobiology, Department of Pathology, Johns Hopkins School of Medicine, Baltimore, Maryland, USA
| | - Monique S França
- Poultry Diagnostic and Research Center, The University of Georgia, Athens, Georgia, USA
| | - H L Shivaprasad
- California Animal Health and Food Safety Laboratory System, University of California, Davis, Tulare, California, USA
| | - Jeffrey C Wolf
- Experimental Pathology Laboratories, Inc., Sterling, Virginia, USA
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Petersen LK, Christensen AB, Andersen J, Folkesson CG, Kristensen O, Andersen C, Alzu A, Sløk FA, Blakskjær P, Madsen D, Azevedo C, Micco I, Hansen NJV. Screening of DNA-Encoded Small Molecule Libraries inside a Living Cell. J Am Chem Soc 2021; 143:2751-2756. [DOI: 10.1021/jacs.0c09213] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Lars K. Petersen
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | | | - Jacob Andersen
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | | | - Ole Kristensen
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | | | - Amaya Alzu
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | - Frank A. Sløk
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | - Peter Blakskjær
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | - Daniel Madsen
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | - Carlos Azevedo
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
| | - Iolanda Micco
- Vipergen ApS, Gammel Kongevej 23A, DK-1610 Copenhagen V, Denmark
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Abstract
The Xenopus oocyte is a unique model system, allowing both the study of complex biological processes within a cellular context through expression of exogenous mRNAs and proteins, and the study of the cell, molecular, and developmental biology of the oocyte itself. During oogenesis, Xenopus oocytes grow dramatically in size, with a mature oocyte having a diameter of ∼1.3 mm, and become highly polarized, localizing many mRNAs and proteins. Thus, the mature oocyte is a repository of maternal mRNAs and proteins that will direct early embryogenesis prior to zygotic genome transcription. Importantly, the Xenopus oocyte also has the capacity to translate exogenous microinjected RNAs, which has enabled breakthroughs in a wide range of areas including cell biology, developmental biology, molecular biology, and physiology. This introduction outlines how Xenopus oocytes can be used to study a variety of important biological questions.
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Affiliation(s)
- Kimberly L Mowry
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Box G-L268, Providence, Rhode Island 02912
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