1
|
Paulson B, Shin I, Jeong H, Kong B, Khazaeinezhad R, Dugasani SR, Jung W, Joo B, Lee HY, Park S, Oh K. Optical dispersion control in surfactant-free DNA thin films by vitamin B 2 doping. Sci Rep 2018; 8:9358. [PMID: 29921918 PMCID: PMC6008429 DOI: 10.1038/s41598-018-27166-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 05/15/2018] [Indexed: 02/03/2023] Open
Abstract
A new route to systematically control the optical dispersion properties of surfactant-free deoxyribonucleic acid (DNA) thin solid films was developed by doping them with vitamin B2, also known as riboflavin. Surfactant-free DNA solid films of high optical quality were successfully deposited on various types of substrates by spin coating of aqueous solutions without additional chemical processes, with thicknesses ranging from 18 to 100 nm. Optical properties of the DNA films were investigated by measuring UV-visible-NIR transmission, and their refractive indices were measured using variable-angle spectroscopic ellipsometry. By doping DNA solid films with riboflavin, the refractive index was consistently increased with an index difference Δn ≥ 0.015 in the spectral range from 500 to 900 nm, which is sufficiently large to make an all-DNA optical waveguide. Detailed correlation between the optical dispersion and riboflavin concentration was experimentally investigated and thermo-optic coefficients of the DNA-riboflavin thin solid films were also experimentally measured in the temperature range from 20 to 85 °C, opening the potential to new bio-thermal sensing applications.
Collapse
Affiliation(s)
- Bjorn Paulson
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea
| | - Inchul Shin
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea
- Samsung Electronics, Hwasong, Gyeonggi-do, 18448, South Korea
| | - Hayoung Jeong
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea
| | - Byungjoo Kong
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea
| | - Reza Khazaeinezhad
- Harvard Medical School, Boston, Massachusetts, 02115, USA
- Wellman Center for Photomedicine, Massachusetts General Hospital, Boston, Massachusetts, 02114, USA
| | - Sreekantha Reddy Dugasani
- Sungkyunkwan Advanced Institute of Nanotechnology (SAINT) and Department of Physics, Sungkyunkwan University, Suwon, 440-746, South Korea
| | - Woohyun Jung
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea
| | - Boram Joo
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea
| | - Hoi-Youn Lee
- Space Optics Research Center, Korea Research Institute of Standards and Science, Daejeon, 34113, South Korea
| | - Sungha Park
- Sungkyunkwan Advanced Institute of Nanotechnology (SAINT) and Department of Physics, Sungkyunkwan University, Suwon, 440-746, South Korea
| | - Kyunghwan Oh
- Photonic Device Physics Laboratory, Institute of Physics and Applied Physics, Yonsei University, Seoul, 120-749, South Korea.
| |
Collapse
|
3
|
Jansson H, Bergman R, Swenson J. Relation between solvent and protein dynamics as studied by dielectric spectroscopy. J Phys Chem B 2006; 109:24134-41. [PMID: 16375405 DOI: 10.1021/jp052418v] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present results obtained by dielectric spectroscopy in wide frequency (10(-2)-10(9) Hz) and temperature ranges on human hemoglobin in the three different solvents water, glycerol, and methanol, at a solvent level of 0.8 g of solvent/g of protein. In this broad frequency region, there are motions on several time-scales in the measured temperature range (110-370 K for water, 170-410 K for glycerol, and 110-310 K for methanol). For all samples, the dielectric data shows at least four relaxation processes, with frequency dependences that are well described by the Havriliak-Negami or Cole-Cole functions. The fastest and most pronounced process in the dielectric spectra of hemoglobin in glycerol and methanol solutions is similar to the alpha-relaxation of the corresponding bulk solvent (but shifted to slower dynamics due to surface interactions). For water solutions, however, this process corresponds to earlier results obtained for water confined in various systems and it is most likely due to a local beta-relaxation. The slowing down of the glycerol and methanol relaxations and the good agreement with earlier results on confined water show that this process is affected by the interaction with the protein surface. The second fastest process is attributed to motions of polar side groups on the protein, with a possible contribution from tightly bound solvent molecules. This process is shifted to slower dynamics with increasing solvent viscosity, and it shows a crossover in its temperature dependence from Arrhenius behavior at low temperatures to non-Arrhenius behavior at higher temperatures where there seems to be an onset of cooperativity effects. The origins of the two slowest relaxation processes (visible at high temperatures and low frequencies), which show saddlelike temperature dependences for the solvents water and methanol, are most likely due to motions of the polypeptide backbone and an even more global motion in the protein molecule.
Collapse
Affiliation(s)
- Helén Jansson
- Department of Applied Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
| | | | | |
Collapse
|
4
|
Brovchenko I, Geiger A, Oleinikova A. Clustering of water molecules in aqueous solutions: Effect of water–solute interaction. Phys Chem Chem Phys 2004. [DOI: 10.1039/b314474g] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
5
|
Starikov EB. Three-dimensional Hartree-Fock crystal-orbital calculation on crystalline diprotonated deoxycytidine-5?-monophosphate monohydrate: Toward rationalizing nucleic acid semiconductivity. Biopolymers 1994. [DOI: 10.1002/bip.360340710] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
6
|
Bonincontro A, Giansanti A, Pedone F, Risuleo G. Radiofrequency dielectric spectroscopy of ribosome suspensions. BIOCHIMICA ET BIOPHYSICA ACTA 1991; 1115:49-53. [PMID: 1958704 DOI: 10.1016/0304-4165(91)90010-e] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Dielectric measurements on different ribosome suspensions were carried out in the frequency range from 10 kHz to 1 GHz. In intact ribosomes two dispersions were detected: one around 100 kHz and the other one in the MHz region. In separated ribosomal subunits and in ribosomes resuspended in a buffer with no magnesium ions (relaxed ribosomes) only the MHz dispersion was observed. Electrical conductivities of the samples at 1 kHz were also measured. The temperature dependence of the two dispersions was investigated and a tentative attribution was proposed.
Collapse
Affiliation(s)
- A Bonincontro
- Dipartimento di Fisica, Università degli Studi di Roma, La Sapienza, Italy
| | | | | | | |
Collapse
|