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Alaa El-Din KK, Forte A, Kasim MF, Miniati F, Vinko SM. STEP: extraction of underlying physics with robust machine learning. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231374. [PMID: 39100625 PMCID: PMC11296055 DOI: 10.1098/rsos.231374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 01/25/2024] [Accepted: 03/20/2024] [Indexed: 08/06/2024]
Abstract
A prevalent class of challenges in modern physics are inverse problems, where physical quantities must be extracted from experimental measurements. End-to-end machine learning approaches to inverse problems typically require constructing sophisticated estimators to achieve the desired accuracy, largely because they need to learn the complex underlying physical model. Here, we discuss an alternative paradigm: by making the physical model auto-differentiable we can construct a neural surrogate to represent the unknown physical quantity sought, while avoiding having to relearn the known physics entirely. We dub this process surrogate training embedded in physics (STEP) and illustrate that it generalizes well and is robust against overfitting and significant noise in the data. We demonstrate how STEP can be applied to perform dynamic kernel deconvolution to analyse resonant inelastic X-ray scattering spectra and show that surprisingly simple estimator architectures suffice to extract the relevant physical information.
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Affiliation(s)
| | | | | | | | - Sam M. Vinko
- Department of Physics, University of Oxford, Oxford, UK
- Central Laser Facility, STFC Rutherford Appleton Laboratory, Didcot, OX11 0QX, UK
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Colombo A, Dold S, Kolb P, Bernhardt N, Behrens P, Correa J, Düsterer S, Erk B, Hecht L, Heilrath A, Irsig R, Iwe N, Jordan J, Kruse B, Langbehn B, Manschwetus B, Martinez F, Meiwes-Broer KH, Oldenburg K, Passow C, Peltz C, Sauppe M, Seel F, Tanyag RMP, Treusch R, Ulmer A, Walz S, Fennel T, Barke I, Möller T, von Issendorff B, Rupp D. Three-dimensional femtosecond snapshots of isolated faceted nanostructures. SCIENCE ADVANCES 2023; 9:eade5839. [PMID: 36812315 PMCID: PMC9946342 DOI: 10.1126/sciadv.ade5839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 01/24/2023] [Indexed: 06/18/2023]
Abstract
The structure and dynamics of isolated nanosamples in free flight can be directly visualized via single-shot coherent diffractive imaging using the intense and short pulses of x-ray free-electron lasers. Wide-angle scattering images encode three-dimensional (3D) morphological information of the samples, but its retrieval remains a challenge. Up to now, effective 3D morphology reconstructions from single shots were only achieved via fitting with highly constrained models, requiring a priori knowledge about possible geometries. Here, we present a much more generic imaging approach. Relying on a model that allows for any sample morphology described by a convex polyhedron, we reconstruct wide-angle diffraction patterns from individual silver nanoparticles. In addition to known structural motives with high symmetries, we retrieve imperfect shapes and agglomerates that were not previously accessible. Our results open unexplored routes toward true 3D structure determination of single nanoparticles and, ultimately, 3D movies of ultrafast nanoscale dynamics.
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Affiliation(s)
- Alessandro Colombo
- Laboratory for Solid State Physics, ETH Zurich, 8093 Zurich, Switzerland
| | - Simon Dold
- European XFEL GmbH, 22869 Schenefeld, Germany
| | - Patrice Kolb
- Laboratory for Solid State Physics, ETH Zurich, 8093 Zurich, Switzerland
| | - Nils Bernhardt
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Patrick Behrens
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Jonathan Correa
- Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany
| | - Stefan Düsterer
- Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany
| | - Benjamin Erk
- Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany
| | - Linos Hecht
- Laboratory for Solid State Physics, ETH Zurich, 8093 Zurich, Switzerland
| | - Andrea Heilrath
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Robert Irsig
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
| | - Norman Iwe
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
| | - Jakob Jordan
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Björn Kruse
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
| | - Bruno Langbehn
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | | | | | - Karl-Heinz Meiwes-Broer
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
- Department of Life, Light and Matter, University of Rostock, 18051 Rostock, Germany
| | - Kevin Oldenburg
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
| | | | - Christian Peltz
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
| | - Mario Sauppe
- Laboratory for Solid State Physics, ETH Zurich, 8093 Zurich, Switzerland
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Fabian Seel
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Rico Mayro P. Tanyag
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Rolf Treusch
- Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany
| | - Anatoli Ulmer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Saida Walz
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Thomas Fennel
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
| | - Ingo Barke
- Institute of Physics, University of Rostock, 18057 Rostock, Germany
- Department of Life, Light and Matter, University of Rostock, 18051 Rostock, Germany
| | - Thomas Möller
- Institut für Optik und Atomare Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Bernd von Issendorff
- Department of Physics, University of Freiburg, 79104 Freiburg, Germany
- Freiburg Materials Research Center, University of Freiburg, 79104 Freiburg, Germany
| | - Daniela Rupp
- Laboratory for Solid State Physics, ETH Zurich, 8093 Zurich, Switzerland
- Max Born Institute, 12489 Berlin, Germany
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