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de Pedro-Carracedo J, Fuentes-Jimenez D, Cabrera-Umpiérrez MF, González-Marcos AP. Structure function in photoplethysmographic signal dynamics for physiological assessment. Sci Rep 2025; 15:14645. [PMID: 40287502 PMCID: PMC12033369 DOI: 10.1038/s41598-025-97573-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Accepted: 04/07/2025] [Indexed: 04/29/2025] Open
Abstract
Physiological systems are inherently complex, driven by non-linear interactions among various subsystems that govern their function across diverse spatiotemporal scales. Understanding this interconnectedness is crucial; in this sense, the structure function enables us to dissect the dynamic intricacies of biological responses. By examining amplitude fluctuations across different timescales, we can gain valuable insights into the variability and adaptability of these vital systems. A structure function serves as an essential tool for uncovering long-term correlations that highlight self-organizing behavior. Additionally, it effectively examines the fractal characteristics of short-term signals influenced by the measurement noise often present in biological data. This paper presents a novel investigation into how various parameters of the structure function of the PhotoPlethysmoGraphic (PPG) signal can serve as reliable physiological biomarkers indicative of an individual's cardiorespiratory activity level. Preliminary tests on 40 students from the Universidad Politécnica de Madrid (UPM), all young and healthy individuals aged between 19 and 30, yielded promising results. These findings enhance our understanding of PPG signal dynamics from a physiological standpoint and provide a procedural framework for real-time patient monitoring and health assessment in clinical environments.
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Affiliation(s)
- Javier de Pedro-Carracedo
- Life Supporting Technologies (LifeSTech), ETSI Telecomunicación, Universidad Politécnica de Madrid (UPM), E-28040, Madrid, Spain
- Escuela Politécnica Superior, Departamento de Automática, Universidad de Alcalá (UAH), E-28871, Alcalá de Henares (Madrid), Spain
| | - David Fuentes-Jimenez
- Escuela Politécnica Superior, Departamento de Electrónica, Universidad de Alcalá (UAH), E-28871, Alcalá de Henares (Madrid), Spain
| | - María Fernanda Cabrera-Umpiérrez
- Life Supporting Technologies (LifeSTech), ETSI Telecomunicación, Universidad Politécnica de Madrid (UPM), E-28040, Madrid, Spain
| | - Ana Pilar González-Marcos
- Life Supporting Technologies (LifeSTech), ETSI Telecomunicación, Universidad Politécnica de Madrid (UPM), E-28040, Madrid, Spain.
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2
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Chen C, Chen N, Wu JL. CEBoosting: Online sparse identification of dynamical systems with regime switching by causation entropy boosting. CHAOS (WOODBURY, N.Y.) 2023; 33:083114. [PMID: 37549116 DOI: 10.1063/5.0154777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Accepted: 07/19/2023] [Indexed: 08/09/2023]
Abstract
Regime switching is ubiquitous in many complex dynamical systems with multiscale features, chaotic behavior, and extreme events. In this paper, a causation entropy boosting (CEBoosting) strategy is developed to facilitate the detection of regime switching and the discovery of the dynamics associated with the new regime via online model identification. The causation entropy, which can be efficiently calculated, provides a logic value of each candidate function in a pre-determined library. The reversal of one or a few such causation entropy indicators associated with the model calibrated for the current regime implies the detection of regime switching. Despite the short length of each batch formed by the sequential data, the accumulated value of causation entropy corresponding to a sequence of data batches leads to a robust indicator. With the detected rectification of the model structure, the subsequent parameter estimation becomes a quadratic optimization problem, which is solved using closed analytic formulas. Using the Lorenz 96 model, it is shown that the causation entropy indicator can be efficiently calculated, and the method applies to moderately large dimensional systems. The CEBoosting algorithm is also adaptive to the situation with partial observations. It is shown via a stochastic parameterized model that the CEBoosting strategy can be combined with data assimilation to identify regime switching triggered by the unobserved latent processes. In addition, the CEBoosting method is applied to a nonlinear paradigm model for topographic mean flow interaction, demonstrating the online detection of regime switching in the presence of strong intermittency and extreme events.
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Affiliation(s)
- Chuanqi Chen
- Department of Mechanical Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Nan Chen
- Department of Mathematics, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Jin-Long Wu
- Department of Mechanical Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
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3
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Analyzing the Correlations and the Statistical Distribution of Moderate to Large Earthquakes Interevent Times in Greece. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12147041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Seismic temporal properties constitute a fundamental component in developing probabilistic models for earthquake occurrence in a specific area. Earthquake occurrence is neither periodic nor completely random but often accrues into bursts in both short- and long-term time scales, and involves a complex summation of triggered and independent events (ΔT). This behavior underlines the impact of the correlations on many potential applications such as the stochastic point process for the earthquake interevent times. In this respect, we intend firstly to determine the appropriate magnitude thresholds, Mthr, indicating the temporal crossover between correlated and statistically independent earthquakes in each 1 of the 10 distinctive sub-areas of the Aegean region. The second goal is the investigation of the statistical distribution that optimally fits the interevent times’ data for earthquakes with M≥Mthr after evaluating the Gamma, Weibull, Lognormal and Exponential distributions performance. Results concerning the correlations analysis evidenced that the temporal crossover of the earthquake interevent time data ranges from Mthr≥ 4.7 up to Mthr≥ 5.1 among the 10 sub-areas. The distribution fitting and comparison reveals that the Gamma distribution outperforms the other three distributions for all the data sets. This finding indicates a burst or clustering behavior in the earthquake interevent times, in which each earthquake occurrence depends upon only the occurrence time of the last one and not from the full seismic history.
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4
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Kalra DS, Santhanam MS. Inferring long memory using extreme events. CHAOS (WOODBURY, N.Y.) 2021; 31:113131. [PMID: 34881581 DOI: 10.1063/5.0064432] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
Many natural and physical processes display long memory and extreme events. In these systems, the measured time series is invariably contaminated by noise and/or missing data. As the extreme events display a large deviation from the mean behavior, noise and/or missing data do not affect the extreme events as much as it affects the typical values. Since the extreme events also carry the information about correlations in the full-time series, we can use them to infer the correlation properties of the latter. In this work, we construct three modified time series using only the extreme events from a given time series. We show that the correlations in the original time series and in the modified time series are related, as measured by the exponent obtained from the detrended fluctuation analysis technique. Hence, the correlation exponents for a long memory time series can be inferred from its extreme events alone. We demonstrate this approach for several empirical time series.
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Affiliation(s)
- Dayal Singh Kalra
- Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pune 411008, India
| | - M S Santhanam
- Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pune 411008, India
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5
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Moreno Escobar JJ, Morales Matamoros O, Aguilar del Villar EY, Tejeida Padilla R, Lina Reyes I, Espinoza Zambrano B, Luna Gómez BD, Calderón Morfín VH. Non-Parametric Evaluation Methods of the Brain Activity of a Bottlenose Dolphin during an Assisted Therapy. Animals (Basel) 2021; 11:ani11020417. [PMID: 33562006 PMCID: PMC7914889 DOI: 10.3390/ani11020417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 01/29/2021] [Accepted: 02/01/2021] [Indexed: 11/23/2022] Open
Abstract
Simple Summary Dolphin Assisted Therapies (DAT) can be used with any person or group with specific needs and it can be as disparate as people at risk of social exclusion, eating disorders, terminally ill, mental health disorders, among many others. This paper is focused on measuring and analyzing dolphins brain activity when DAT is taking place, in order to identify if there is any differences in female dolphin’s neuronal signal when it is interacting with control or intervention subjects. In addition, we designed a wireless and portable electroencephalographic single-channel signal capture device to monitor the brain activity of a female bottle-nose dolphin. Our findings also validate the evidence that the interaction between a patient with a certain disease or disorder and undergoes to a DAT modifies usual brain activity behavior of a female bottle-nose dolphin. Abstract Dolphin-Assisted Therapies (DAT) are alternative therapies aimed to reduce anxiety levels, stress relief and physical benefits. This paper is focused on measuring and analyzing dolphins brain activity when DAT is taking place in order to identify if there is any differences in female dolphin’s neuronal signal when it is interacting with control or intervention subjects, performing our research in Delfiniti, Ixtapa, Mexico facilities. We designed a wireless and portable electroencephalographic single-channel signal capture sensor to acquire and monitor the brain activity of a female bottle-nose dolphin. This EEG sensor was able to show that dolphin activity at rest is characterized by high spectral power at slow-frequencies bands. When the dolphin participated in DAT, a 23.53% increment in the 12–30 Hz frequency band was observed, but this only occurred for patients with some disease or disorder, given that 0.5–4 Hz band keeps it at 17.91% when there is a control patient. Regarding the fractal or Self-Affine Analysis, we found for all samples studied that at the beginning the dolphin’s brain activity behaved as a self-affine fractal described by a power-law until the fluctuations of voltage reached the crossovers, and after the crossovers these fluctuations left this scaling behavior. Hence, our findings validate the hypothesis that the participation in a DAT of a Patient with a certain disease or disorder modifies the usual behavior of a female bottle-nose dolphin.
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Affiliation(s)
- Jesús Jaime Moreno Escobar
- Escuela Superior de Ingeniería Mecánica y Eléctrica, Instituto Politécnico Nacional, 07340 Ciudad de México, Mexico; (O.M.M.); (E.Y.A.d.V.); (I.L.R.); (B.E.Z.); (B.D.L.G.)
- Correspondence: ; Tel.: +52-55-5729-6000 (ext. 54639)
| | - Oswaldo Morales Matamoros
- Escuela Superior de Ingeniería Mecánica y Eléctrica, Instituto Politécnico Nacional, 07340 Ciudad de México, Mexico; (O.M.M.); (E.Y.A.d.V.); (I.L.R.); (B.E.Z.); (B.D.L.G.)
| | - Erika Yolanda Aguilar del Villar
- Escuela Superior de Ingeniería Mecánica y Eléctrica, Instituto Politécnico Nacional, 07340 Ciudad de México, Mexico; (O.M.M.); (E.Y.A.d.V.); (I.L.R.); (B.E.Z.); (B.D.L.G.)
| | - Ricardo Tejeida Padilla
- Escuela Superior de Turismo, Instituto Politécnico Nacional, 07630 Ciudad de México, Mexico;
| | - Ixchel Lina Reyes
- Escuela Superior de Ingeniería Mecánica y Eléctrica, Instituto Politécnico Nacional, 07340 Ciudad de México, Mexico; (O.M.M.); (E.Y.A.d.V.); (I.L.R.); (B.E.Z.); (B.D.L.G.)
| | - Brenda Espinoza Zambrano
- Escuela Superior de Ingeniería Mecánica y Eléctrica, Instituto Politécnico Nacional, 07340 Ciudad de México, Mexico; (O.M.M.); (E.Y.A.d.V.); (I.L.R.); (B.E.Z.); (B.D.L.G.)
| | - Brandon David Luna Gómez
- Escuela Superior de Ingeniería Mecánica y Eléctrica, Instituto Politécnico Nacional, 07340 Ciudad de México, Mexico; (O.M.M.); (E.Y.A.d.V.); (I.L.R.); (B.E.Z.); (B.D.L.G.)
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6
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Telesca L, Czechowski Z. Clustering of extreme events in time series generated by the fractional Ornstein-Uhlenbeck equation. CHAOS (WOODBURY, N.Y.) 2020; 30:093140. [PMID: 33003914 DOI: 10.1063/5.0023301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 09/07/2020] [Indexed: 06/11/2023]
Abstract
We analyze the time clustering phenomenon in sequences of extremes of time series generated by the fractional Ornstein-Uhlenbeck (fO-U) equation as the source of long-term correlation. We used the percentile-based definition of extremes based on the crossing theory or run theory, where a run is a sequence of L contiguous values above a given percentile. Thus, a sequence of extremes becomes a point process in time, being the time of occurrence of the extreme the starting time of the run. We investigate the relationship between the Hurst exponent related to the time series generated by the fO-U equation and three measures of time clustering of the corresponding extremes defined on the base of the 95th percentile. Our results suggest that for persistent pure fractional Gaussian noise, the sequence of the extremes is clusterized, while extremes obtained by antipersistent or Markovian pure fractional Gaussian noise seem to behave more regularly or Poissonianly. However, for the fractional Ornstein-Uhlenbeck equation, the clustering of extremes is evident even for antipersistent and Markovian cases. This is a result of short range correlations caused by differential and drift terms. The drift parameter influences the extremes clustering effect-it drops with increasing value of the parameter.
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Affiliation(s)
- Luciano Telesca
- National Research Council, Institute of Methodologies for Environmental Analysis, C.da S. Loja, 85050 Tito, Potenza, Italy
| | - Zbigniew Czechowski
- Institute of Geophysics, Polish Academy of Sciences, Księcia Janusza 64, 01-452 Warsaw, Poland
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7
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Das S, Bäcker A. Power-law trapping in the volume-preserving Arnold-Beltrami-Childress map. Phys Rev E 2020; 101:032201. [PMID: 32289886 DOI: 10.1103/physreve.101.032201] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Accepted: 01/30/2020] [Indexed: 11/07/2022]
Abstract
Understanding stickiness and power-law behavior of Poincaré recurrence statistics is an open problem for higher-dimensional systems, in contrast to the well-understood case of systems with two degrees of freedom. We study such intermittent behavior of chaotic orbits in three-dimensional volume-preserving maps using the example of the Arnold-Beltrami-Childress map. The map has a mixed phase space with a cylindrical regular region surrounded by a chaotic sea for the considered parameters. We observe a characteristic overall power-law decay of the cumulative Poincaré recurrence statistics with significant oscillations superimposed. This slow decay is caused by orbits which spend long times close to the surface of the regular region. Representing such long-trapped orbits in frequency space shows clear signatures of partial barriers and reveals that coupled resonances play an essential role. Using a small number of the most relevant resonances allows for classifying long-trapped orbits. From this the Poincaré recurrence statistics can be divided into different exponentially decaying contributions, which very accurately explains the overall power-law behavior including the oscillations.
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Affiliation(s)
- Swetamber Das
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Straße 38, 01187 Dresden, Germany
| | - Arnd Bäcker
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Straße 38, 01187 Dresden, Germany.,Technische Universität Dresden, Institut für Theoretische Physik and Center for Dynamics, 01062 Dresden, Germany
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8
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Chen N, Majda AJ. Predicting observed and hidden extreme events in complex nonlinear dynamical systems with partial observations and short training time series. CHAOS (WOODBURY, N.Y.) 2020; 30:033101. [PMID: 32237755 DOI: 10.1063/1.5122199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 02/05/2020] [Indexed: 06/11/2023]
Abstract
Extreme events appear in many complex nonlinear dynamical systems. Predicting extreme events has important scientific significance and large societal impacts. In this paper, a new mathematical framework of building suitable nonlinear approximate models is developed, which aims at predicting both the observed and hidden extreme events in complex nonlinear dynamical systems for short-, medium-, and long-range forecasting using only short and partially observed training time series. Different from many ad hoc data-driven regression models, these new nonlinear models take into account physically motivated processes and physics constraints. They also allow efficient and accurate algorithms for parameter estimation, data assimilation, and prediction. Cheap stochastic parameterizations, judicious linear feedback control, and suitable noise inflation strategies are incorporated into the new nonlinear modeling framework, which provide accurate predictions of both the observed and hidden extreme events as well as the strongly non-Gaussian statistics in various highly intermittent nonlinear dyad and triad models, including the Lorenz 63 model. Then, a stochastic mode reduction strategy is applied to a 21-dimensional nonlinear paradigm model for topographic mean flow interaction. The resulting five-dimensional physics-constrained nonlinear approximate model is able to accurately predict extreme events and the regime switching between zonally blocked and unblocked flow patterns. Finally, incorporating judicious linear stochastic processes into a simple nonlinear approximate model succeeds in learning certain complicated nonlinear effects of a six-dimensional low-order Charney-DeVore model with strong chaotic and regime switching behavior. The simple nonlinear approximate model then allows accurate online state estimation and the short- and medium-range forecasting of extreme events.
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Affiliation(s)
- Nan Chen
- Department of Mathematics, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA
| | - Andrew J Majda
- Department of Mathematics and Center for Atmosphere Ocean Science, Courant Institute of Mathematical Sciences, New York University, New York, New York 10003, USA and Center for Prototype Climate Modeling, New York University Abu Dhabi, Saadiyat Island, Abu Dhabi 129188, UAE
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9
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Moriña D, Serra I, Puig P, Corral Á. Probability estimation of a Carrington-like geomagnetic storm. Sci Rep 2019; 9:2393. [PMID: 30787360 PMCID: PMC6382914 DOI: 10.1038/s41598-019-38918-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 01/09/2019] [Indexed: 11/09/2022] Open
Abstract
Intense geomagnetic storms can cause severe damage to electrical systems and communications. This work proposes a counting process with Weibull inter-occurrence times in order to estimate the probability of extreme geomagnetic events. It is found that the scale parameter of the inter-occurrence time distribution grows exponentially with the absolute value of the intensity threshold defining the storm, whereas the shape parameter keeps rather constant. The model is able to forecast the probability of occurrence of an event for a given intensity threshold; in particular, the probability of occurrence on the next decade of an extreme event of a magnitude comparable or larger than the well-known Carrington event of 1859 is explored, and estimated to be between 0.46% and 1.88% (with a 95% confidence), a much lower value than those reported in the existing literature.
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Affiliation(s)
- David Moriña
- Barcelona Graduate School of Mathematics (BGSMath), Edifici C, Campus Bellaterra, E-08193, Barcelona, Spain. .,Departament de Matemàtiques, Universitat Autònoma de Barcelona (UAB), E-08193, Barcelona, Spain. .,Unit of Infections and Cancer - Information and Interventions (UNIC - I&I), Cancer Epidemiology Research Program (CERP), Catalan Institute of Oncology (ICO)-IDIBELL, L'Hospitalet de Llobregat, Barcelona, Spain.
| | - Isabel Serra
- Barcelona Graduate School of Mathematics (BGSMath), Edifici C, Campus Bellaterra, E-08193, Barcelona, Spain.,Departament de Matemàtiques, Universitat Autònoma de Barcelona (UAB), E-08193, Barcelona, Spain.,Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193, Barcelona, Spain.,Barcelona Supercomputing Center, E-08034, Barcelona, Spain
| | - Pedro Puig
- Barcelona Graduate School of Mathematics (BGSMath), Edifici C, Campus Bellaterra, E-08193, Barcelona, Spain.,Departament de Matemàtiques, Universitat Autònoma de Barcelona (UAB), E-08193, Barcelona, Spain
| | - Álvaro Corral
- Barcelona Graduate School of Mathematics (BGSMath), Edifici C, Campus Bellaterra, E-08193, Barcelona, Spain.,Departament de Matemàtiques, Universitat Autònoma de Barcelona (UAB), E-08193, Barcelona, Spain.,Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193, Barcelona, Spain.,Complexity Science Hub Vienna, Josefstädter Straβe 39, 1080, Vienna, Austria
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10
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Gosson MAD. The Symplectic Camel and Poincaré Superrecurrence: Open Problems. ENTROPY 2018; 20:e20070499. [PMID: 33265589 PMCID: PMC7513024 DOI: 10.3390/e20070499] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 05/26/2018] [Revised: 06/21/2018] [Accepted: 06/26/2018] [Indexed: 11/21/2022]
Abstract
Poincaré’s Recurrence Theorem implies that any isolated Hamiltonian system evolving in a bounded Universe returns infinitely many times arbitrarily close to its initial phase space configuration. We discuss this and related recurrence properties from the point of view of recent advances in symplectic topology which have not yet reached the Physics community. These properties are closely related to Emergent Quantum Mechanics since they belong to a twilight zone between classical (Hamiltonian) mechanics and its quantization.
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11
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Recurrence Interval Analysis on Electricity Consumption of an Office Building in China. SUSTAINABILITY 2018. [DOI: 10.3390/su10020306] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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12
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Das S, Gupte N. Transport, diffusion, and energy studies in the Arnold-Beltrami-Childress map. Phys Rev E 2018; 96:032210. [PMID: 29346902 DOI: 10.1103/physreve.96.032210] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2017] [Indexed: 11/07/2022]
Abstract
We study the transport and diffusion properties of passive inertial particles described by a six-dimensional dissipative bailout embedding map. The base map chosen for the study is the three-dimensional incompressible Arnold-Beltrami-Childress (ABC) map chosen as a representation of volume preserving flows. There are two distinct cases: the two-action and the one-action cases, depending on whether two or one of the parameters (A,B,C) exceed 1. The embedded map dynamics is governed by two parameters (α,γ), which quantify the mass density ratio and dissipation, respectively. There are important differences between the aerosol (α<1) and the bubble (α>1) regimes. We have studied the diffusive behavior of the system and constructed the phase diagram in the parameter space by computing the diffusion exponents η. Three classes have been broadly classified-subdiffusive transport (η<1), normal diffusion (η≈1), and superdiffusion (η>1) with η≈2 referred to as the ballistic regime. Correlating the diffusive phase diagram with the phase diagram for dynamical regimes seen earlier, we find that the hyperchaotic bubble regime is largely correlated with normal and superdiffusive behavior. In contrast, in the aerosol regime, ballistic superdiffusion is seen in regions that largely show periodic dynamical behaviors, whereas subdiffusive behavior is seen in both periodic and chaotic regimes. The probability distributions of the diffusion exponents show power-law scaling for both aerosol and bubbles in the superdiffusive regimes. We further study the Poincáre recurrence times statistics of the system. Here, we find that recurrence time distributions show power law regimes due to the existence of partial barriers to transport in the phase space. Moreover, the plot of average particle kinetic energies versus the mass density ratio for the two-action case exhibits a devil's staircase-like structure for higher dissipation values. We explain these results and discuss their implications for realistic systems.
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Affiliation(s)
- Swetamber Das
- Department of Physics, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Neelima Gupte
- Department of Physics, Indian Institute of Technology Madras, Chennai, 600036, India
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13
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The Recurrence Interval Difference of Power Load in Heavy/Light Industries of China. ENERGIES 2018. [DOI: 10.3390/en11010106] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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14
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Witt A, Ehlers F, Luther S. Extremes of fractional noises: A model for the timings of arrhythmic heart beats in post-infarction patients. CHAOS (WOODBURY, N.Y.) 2017; 27:093942. [PMID: 28964134 DOI: 10.1063/1.5003249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We have analyzed symbol sequences of heart beat annotations obtained from 24-h electrocardiogram recordings of 184 post-infarction patients (from the Cardiac Arrhythmia Suppression Trial database, CAST). In the symbol sequences, each heart beat was coded as an arrhythmic or as a normal beat. The symbol sequences were analyzed with a model-based approach which relies on two-parametric peaks over the threshold (POT) model, interpreting each premature ventricular contraction (PVC) as an extreme event. For the POT model, we explored (i) the Shannon entropy which was estimated in terms of the Lempel-Ziv complexity, (ii) the shape parameter of the Weibull distribution that best fits the PVC return times, and (iii) the strength of long-range correlations quantified by detrended fluctuation analysis (DFA) for the two-dimensional parameter space. We have found that in the frame of our model the Lempel-Ziv complexity is functionally related to the shape parameter of the Weibull distribution. Thus, two complementary measures (entropy and strength of long-range correlations) are sufficient to characterize realizations of the two-parametric model. For the CAST data, we have found evidence for an intermediate strength of long-range correlations in the PVC timings, which are correlated to the age of the patient: younger post-infarction patients have higher strength of long-range correlations than older patients. The normalized Shannon entropy has values in the range 0.5<hLZ<1.0 which indicates a high degree of randomness in the PVC timings. For the CAST and the model data, the ranges of both measures were found to be in good accordance. The correlation between the age and the persistence strength found for the CAST data could be explained as a change of model parameters.
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Affiliation(s)
- Annette Witt
- Biomedical Physics Group, Max-Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
| | - Frithjof Ehlers
- Biomedical Physics Group, Max-Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
| | - Stefan Luther
- German Center for Cardiovascular Research (DZHK), Partner Site Göttingen, Göttingen, Germany
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15
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Bogachev MI, Markelov OA, Kayumov AR, Bunde A. Superstatistical model of bacterial DNA architecture. Sci Rep 2017; 7:43034. [PMID: 28225058 PMCID: PMC5320525 DOI: 10.1038/srep43034] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Accepted: 01/18/2017] [Indexed: 12/15/2022] Open
Abstract
Understanding the physical principles that govern the complex DNA structural organization as well as its mechanical and thermodynamical properties is essential for the advancement in both life sciences and genetic engineering. Recently we have discovered that the complex DNA organization is explicitly reflected in the arrangement of nucleotides depicted by the universal power law tailed internucleotide interval distribution that is valid for complete genomes of various prokaryotic and eukaryotic organisms. Here we suggest a superstatistical model that represents a long DNA molecule by a series of consecutive ~150 bp DNA segments with the alternation of the local nucleotide composition between segments exhibiting long-range correlations. We show that the superstatistical model and the corresponding DNA generation algorithm explicitly reproduce the laws governing the empirical nucleotide arrangement properties of the DNA sequences for various global GC contents and optimal living temperatures. Finally, we discuss the relevance of our model in terms of the DNA mechanical properties. As an outlook, we focus on finding the DNA sequences that encode a given protein while simultaneously reproducing the nucleotide arrangement laws observed from empirical genomes, that may be of interest in the optimization of genetic engineering of long DNA molecules.
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Affiliation(s)
- Mikhail I. Bogachev
- Biomedical Engineering Research Centre, St. Petersburg Electrotechnical University, St. Petersburg, 197376, Russia
- Molecular Genetics of Microorganisms Lab, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, Tatarstan, 420008, Russia
| | - Oleg A. Markelov
- Biomedical Engineering Research Centre, St. Petersburg Electrotechnical University, St. Petersburg, 197376, Russia
| | - Airat R. Kayumov
- Molecular Genetics of Microorganisms Lab, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, Tatarstan, 420008, Russia
| | - Armin Bunde
- Institut für Theoretische Physik, Justus-Liebig-Universität Giessen, 35392 Giessen, Germany
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16
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Lerch S, Thorarinsdottir TL, Ravazzolo F, Gneiting T. Forecaster’s Dilemma: Extreme Events and Forecast Evaluation. Stat Sci 2017. [DOI: 10.1214/16-sts588] [Citation(s) in RCA: 66] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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17
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Statistical prediction of protein structural, localization and functional properties by the analysis of its fragment mass distributions after proteolytic cleavage. Sci Rep 2016; 6:22286. [PMID: 26924271 PMCID: PMC4770285 DOI: 10.1038/srep22286] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2015] [Accepted: 02/11/2016] [Indexed: 12/03/2022] Open
Abstract
Structural, localization and functional properties of unknown proteins are often being predicted from their primary polypeptide chains using sequence alignment with already characterized proteins and consequent molecular modeling. Here we suggest an approach to predict various structural and structure-associated properties of proteins directly from the mass distributions of their proteolytic cleavage fragments. For amino-acid-specific cleavages, the distributions of fragment masses are determined by the distributions of inter-amino-acid intervals in the protein, that in turn apparently reflect its structural and structure-related features. Large-scale computer simulations revealed that for transmembrane proteins, either α-helical or β -barrel secondary structure could be predicted with about 90% accuracy after thermolysin cleavage. Moreover, 3/4 intrinsically disordered proteins could be correctly distinguished from proteins with fixed three-dimensional structure belonging to all four SCOP structural classes by combining 3–4 different cleavages. Additionally, in some cases the protein cellular localization (cytosolic or membrane-associated) and its host organism (Firmicute or Proteobacteria) could be predicted with around 80% accuracy. In contrast to cytosolic proteins, for membrane-associated proteins exhibiting specific structural conformations, their monotopic or transmembrane localization and functional group (ATP-binding, transporters, sensors and so on) could be also predicted with high accuracy and particular robustness against missing cleavages.
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18
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Zou Y, Donner RV, Thiel M, Kurths J. Disentangling regular and chaotic motion in the standard map using complex network analysis of recurrences in phase space. CHAOS (WOODBURY, N.Y.) 2016; 26:023120. [PMID: 26931601 DOI: 10.1063/1.4942584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Recurrence in the phase space of complex systems is a well-studied phenomenon, which has provided deep insights into the nonlinear dynamics of such systems. For dissipative systems, characteristics based on recurrence plots have recently attracted much interest for discriminating qualitatively different types of dynamics in terms of measures of complexity, dynamical invariants, or even structural characteristics of the underlying attractor's geometry in phase space. Here, we demonstrate that the latter approach also provides a corresponding distinction between different co-existing dynamical regimes of the standard map, a paradigmatic example of a low-dimensional conservative system. Specifically, we show that the recently developed approach of recurrence network analysis provides potentially useful geometric characteristics distinguishing between regular and chaotic orbits. We find that chaotic orbits in an intermittent laminar phase (commonly referred to as sticky orbits) have a distinct geometric structure possibly differing in a subtle way from those of regular orbits, which is highlighted by different recurrence network properties obtained from relatively short time series. Thus, this approach can help discriminating regular orbits from laminar phases of chaotic ones, which presents a persistent challenge to many existing chaos detection techniques.
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Affiliation(s)
- Yong Zou
- Department of Physics, East China Normal University, 200062 Shanghai, China
| | - Reik V Donner
- Potsdam Institute for Climate Impact Research, P. O. Box 60 12 03, 14412 Potsdam, Germany
| | - Marco Thiel
- Institute for Complex Systems and Mathematical Biology, University of Aberdeen, Aberdeen AB243UE, United Kingdom
| | - Jürgen Kurths
- Potsdam Institute for Climate Impact Research, P. O. Box 60 12 03, 14412 Potsdam, Germany
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19
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Xavier JC, Strunz WT, Beims MW. Dissipative dynamics in a finite chaotic environment: Relationship between damping rate and Lyapunov exponent. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:022908. [PMID: 26382477 DOI: 10.1103/physreve.92.022908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Indexed: 06/05/2023]
Abstract
We consider the energy flow between a classical one-dimensional harmonic oscillator and a set of N two-dimensional chaotic oscillators, which represents the finite environment. Using linear response theory we obtain an analytical effective equation for the system harmonic oscillator, which includes a frequency dependent dissipation, a shift, and memory effects. The damping rate is expressed in terms of the environment mean Lyapunov exponent. A good agreement is shown by comparing theoretical and numerical results, even for environments with mixed (regular and chaotic) motion. Resonance between system and environment frequencies is shown to be more efficient to generate dissipation than larger mean Lyapunov exponents or a larger number of bath chaotic oscillators.
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Affiliation(s)
- J C Xavier
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Brazil
- Institut für Theoretische Physik, Technische Universität Dresden, D-01069 Dresden, Germany
| | - W T Strunz
- Institut für Theoretische Physik, Technische Universität Dresden, D-01069 Dresden, Germany
| | - M W Beims
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Brazil
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, D-01187 Dresden, Germany
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20
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Corrado R, Cherubini AM, Pennetta C. Early warning signals of desertification transitions in semiarid ecosystems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:062705. [PMID: 25615127 DOI: 10.1103/physreve.90.062705] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Indexed: 05/07/2023]
Abstract
The identification of early warning signals for regime shifts in ecosystems is of crucial importance given their impact in terms of economic and social effects. We present here the results of a theoretical study on the desertification transition in semiarid ecosystems under external stress. We performed numerical simulations based on a stochastic cellular automaton model, and we studied the dynamics of the vegetation clusters in terms of percolation theory, assumed as an effective tool for analyzing the geometrical properties of the clusters. Focusing on the role played by the strength of external stresses, measured by the mortality rate m, we followed the progressive degradation of the ecosystem for increasing m, identifying different stages: first, the fragmentation transition occurring at relatively low values of m, then the desertification transition at higher mortality rates, and finally the full desertification transition corresponding to the extinction of the vegetation and the almost complete degradation of the soil, attained at the maximum value of m. For each transition we calculated the spanning probabilities as functions of m and the percolation thresholds according to different spanning criteria. The identification of the different thresholds is proposed as an useful tool for monitoring the increasing degradation of real-world finite-size systems. Moreover, we studied the time fluctuations of the sizes of the biggest clusters of vegetated and nonvegetated cells over the entire range of mortality values. The change of sign in the skewness of the size distributions, occurring at the fragmentation threshold for the biggest vegetation cluster and at the desertification threshold for the nonvegetated cluster, offers new early warning signals for desertification. Other new and robust indicators are given by the maxima of the root-mean-square deviation of the distributions, which are attained respectively inside the fragmentation interval, for the vegetated biggest cluster, and inside the desertification interval, for the nonvegetated cluster.
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Affiliation(s)
- Raffaele Corrado
- PhD School on Climate Change Sciences, University of Salento, I-73100 Lecce, Italy
| | - Anna Maria Cherubini
- Dipartimento di Matematica e Fisica "Ennio De Giorgi," University of Salento, I-73100 Lecce, Italy
| | - Cecilia Pennetta
- Dipartimento di Matematica e Fisica "Ennio De Giorgi," University of Salento, I-73100 Lecce, Italy and Istituto Nazionale di Fisica Nucleare (INFN), Italy
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21
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Bogachev MI, Kayumov AR, Bunde A. Universal internucleotide statistics in full genomes: a footprint of the DNA structure and packaging? PLoS One 2014; 9:e112534. [PMID: 25438044 PMCID: PMC4249851 DOI: 10.1371/journal.pone.0112534] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2014] [Accepted: 10/07/2014] [Indexed: 11/18/2022] Open
Abstract
Uncovering the fundamental laws that govern the complex DNA structural organization remains challenging and is largely based upon reconstructions from the primary nucleotide sequences. Here we investigate the distributions of the internucleotide intervals and their persistence properties in complete genomes of various organisms from Archaea and Bacteria to H. Sapiens aiming to reveal the manifestation of the universal DNA architecture. We find that in all considered organisms the internucleotide interval distributions exhibit the same -exponential form. While in prokaryotes a single -exponential function makes the best fit, in eukaryotes the PDF contains additionally a second -exponential, which in the human genome makes a perfect approximation over nearly 10 decades. We suggest that this functional form is a footprint of the heterogeneous DNA structure, where the first -exponential reflects the universal helical pitch that appears both in pro- and eukaryotic DNA, while the second -exponential is a specific marker of the large-scale eukaryotic DNA organization.
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Affiliation(s)
- Mikhail I. Bogachev
- Radio Systems Department & Biomedical Engineering Research Center, Saint Petersburg Electrotechnical University, Saint Petersburg, Russia
- * E-mail:
| | - Airat R. Kayumov
- Department of Genetics & Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, Tatarstan, Russia
| | - Armin Bunde
- Institut für Theoretische Physik, Justus-Liebig-Universität Giessen, Giessen, Hessen, Germany
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22
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Ibrahim AK, Barghathi H, Vojta T. Enhanced rare-region effects in the contact process with long-range correlated disorder. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:042132. [PMID: 25375463 DOI: 10.1103/physreve.90.042132] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2014] [Indexed: 06/04/2023]
Abstract
We investigate the nonequilibrium phase transition in the disordered contact process in the presence of long-range spatial disorder correlations. These correlations greatly increase the probability for finding rare regions that are locally in the active phase while the bulk system is still in the inactive phase. Specifically, if the correlations decay as a power of the distance, the rare-region probability is a stretched exponential of the rare-region size rather than a simple exponential as is the case for uncorrelated disorder. As a result, the Griffiths singularities are enhanced and take a non-power-law form. The critical point itself is of infinite-randomness type but with critical exponent values that differ from the uncorrelated case. We report large-scale Monte Carlo simulations that verify and illustrate our theory. We also discuss generalizations to higher dimensions and applications to other systems such as the random transverse-field Ising model, itinerant magnets, and the superconductor-metal transition.
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Affiliation(s)
- Ahmed K Ibrahim
- Department of Physics, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
| | - Hatem Barghathi
- Department of Physics, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
| | - Thomas Vojta
- Department of Physics, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
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23
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Chicheportiche R, Chakraborti A. Copulas and time series with long-ranged dependencies. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:042117. [PMID: 24827203 DOI: 10.1103/physreve.89.042117] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2013] [Indexed: 06/03/2023]
Abstract
We review ideas on temporal dependencies and recurrences in discrete time series from several areas of natural and social sciences. We revisit existing studies and redefine the relevant observables in the language of copulas (joint laws of the ranks). We propose that copulas provide an appropriate mathematical framework to study nonlinear time dependencies and related concepts-like aftershocks, Omori law, recurrences, and waiting times. We also critically argue, using this global approach, that previous phenomenological attempts involving only a long-ranged autocorrelation function lacked complexity in that they were essentially monoscale.
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Affiliation(s)
- Rémy Chicheportiche
- Chaire de finance quantitative, École Centrale Paris, 92 295 Châtenay-Malabry, France
| | - Anirban Chakraborti
- Chaire de finance quantitative, École Centrale Paris, 92 295 Châtenay-Malabry, France
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24
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25
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Ansmann G, Karnatak R, Lehnertz K, Feudel U. Extreme events in excitable systems and mechanisms of their generation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:052911. [PMID: 24329335 DOI: 10.1103/physreve.88.052911] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Indexed: 06/03/2023]
Abstract
We study deterministic systems, composed of excitable units of FitzHugh-Nagumo type, that are capable of self-generating and self-terminating strong deviations from their regular dynamics without the influence of noise or parameter change. These deviations are rare, short-lasting, and recurrent and can therefore be regarded as extreme events. Employing a range of methods we analyze dynamical properties of the systems, identifying features in the systems' dynamics that may qualify as precursors to extreme events. We investigate these features and elucidate mechanisms that may be responsible for the generation of the extreme events.
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Affiliation(s)
- Gerrit Ansmann
- Department of Epileptology, University of Bonn, Sigmund-Freud-Straße 25, 53105 Bonn, Germany and Helmholtz Institute for Radiation and Nuclear Physics, University of Bonn, Nussallee 14-16, 53115 Bonn, Germany and Interdisciplinary Center for Complex Systems, University of Bonn, Brühler Straße 7, 53175 Bonn, Germany
| | - Rajat Karnatak
- Theoretical Physics/Complex Systems, ICBM, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky-Straße 9-11, Box 2503, 26111 Oldenburg, Germany
| | - Klaus Lehnertz
- Department of Epileptology, University of Bonn, Sigmund-Freud-Straße 25, 53105 Bonn, Germany and Helmholtz Institute for Radiation and Nuclear Physics, University of Bonn, Nussallee 14-16, 53115 Bonn, Germany and Interdisciplinary Center for Complex Systems, University of Bonn, Brühler Straße 7, 53175 Bonn, Germany
| | - Ulrike Feudel
- Theoretical Physics/Complex Systems, ICBM, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky-Straße 9-11, Box 2503, 26111 Oldenburg, Germany and Research Center Neurosensory Science, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky-Straße 9-11, 26111 Oldenburg, Germany and Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742-2431, USA
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26
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Abud CV, de Carvalho RE. Multifractality, stickiness, and recurrence-time statistics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:042922. [PMID: 24229264 DOI: 10.1103/physreve.88.042922] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Revised: 09/14/2013] [Indexed: 06/02/2023]
Abstract
We identify the fine structure of resonance islands and the stickiness in chaos through recurrence time statistics (RTS), which is based on the concept of Poincaré recurrences. The projection of recurrence time statistics onto the phase space does give relevant information on the hierarchical and microstructures of the chaotic beach around the islands of a near-integrable system, the annular billiard. These microstructures interfere in the effective transport of a particle in the phase space, which can be observed through RTS. This technique proves also to be a powerful tool to describe the homoclinic tangle of the manifolds within the chaotic sea.
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Affiliation(s)
- C Vieira Abud
- Univ Estadual Paulista-UNESP, 13506-900 Rio Claro, SP, Brazil and Universidade de São Paulo-USP, 05315-970 São Paulo, SP, Brazil
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27
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Akimoto T, Kaneko T, Yasuoka K, Zeng XC. Homogeneous connectivity of potential energy network in a solidlike state of water cluster. J Chem Phys 2013; 138:244301. [DOI: 10.1063/1.4811289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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28
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Ranković S, Porter MA. Two-particle circular billiards versus randomly perturbed one-particle circular billiards. CHAOS (WOODBURY, N.Y.) 2013; 23:013123. [PMID: 23556960 DOI: 10.1063/1.4775756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
We study a two-particle circular billiard containing two finite-size circular particles that collide elastically with the billiard boundary and with each other. Such a two-particle circular billiard provides a clean example of an "intermittent" system. This billiard system behaves chaotically, but the time scale on which chaos manifests can become arbitrarily long as the sizes of the confined particles become smaller. The finite-time dynamics of this system depends on the relative frequencies of (chaotic) particle-particle collisions versus (integrable) particle-boundary collisions, and investigating these dynamics is computationally intensive because of the long time scales involved. To help improve understanding of such two-particle dynamics, we compare the results of diagnostics used to measure chaotic dynamics for a two-particle circular billiard with those computed for two types of one-particle circular billiards in which a confined particle undergoes random perturbations. Importantly, such one-particle approximations are much less computationally demanding than the original two-particle system, and we expect them to yield reasonable estimates of the extent of chaotic behavior in the two-particle system when the sizes of confined particles are small. Our computations of recurrence-rate coefficients, finite-time Lyapunov exponents, and autocorrelation coefficients support this hypothesis and suggest that studying randomly perturbed one-particle billiards has the potential to yield insights into the aggregate properties of two-particle billiards, which are difficult to investigate directly without enormous computation times (especially when the sizes of the confined particles are small).
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Affiliation(s)
- Sandra Ranković
- Institute for Theoretical Physics, ETH Zürich, 8093 Zürich, Switzerland
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29
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Emotional persistence in online chatting communities. Sci Rep 2012; 2:402. [PMID: 22577512 PMCID: PMC3349267 DOI: 10.1038/srep00402] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Accepted: 04/12/2012] [Indexed: 11/08/2022] Open
Abstract
How do users behave in online chatrooms, where they instantaneously read and write posts? We analyzed about 2.5 million posts covering various topics in Internet relay channels, and found that user activity patterns follow known power-law and stretched exponential distributions, indicating that online chat activity is not different from other forms of communication. Analysing the emotional expressions (positive, negative, neutral) of users, we revealed a remarkable persistence both for individual users and channels. I.e. despite their anonymity, users tend to follow social norms in repeated interactions in online chats, which results in a specific emotional “tone” of the channels. We provide an agent-based model of emotional interaction, which recovers qualitatively both the activity patterns in chatrooms and the emotional persistence of users and channels. While our assumptions about agent's emotional expressions are rooted in psychology, the model allows to test different hypothesis regarding their emotional impact in online communication.
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30
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Zou Y, Donner RV, Kurths J. Geometric and dynamic perspectives on phase-coherent and noncoherent chaos. CHAOS (WOODBURY, N.Y.) 2012; 22:013115. [PMID: 22462991 DOI: 10.1063/1.3677367] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Statistically distinguishing between phase-coherent and noncoherent chaotic dynamics from time series is a contemporary problem in nonlinear sciences. In this work, we propose different measures based on recurrence properties of recorded trajectories, which characterize the underlying systems from both geometric and dynamic viewpoints. The potentials of the individual measures for discriminating phase-coherent and noncoherent chaotic oscillations are discussed. A detailed numerical analysis is performed for the chaotic Rössler system, which displays both types of chaos as one control parameter is varied, and the Mackey-Glass system as an example of a time-delay system with noncoherent chaos. Our results demonstrate that especially geometric measures from recurrence network analysis are well suited for tracing transitions between spiral- and screw-type chaos, a common route from phase-coherent to noncoherent chaos also found in other nonlinear oscillators. A detailed explanation of the observed behavior in terms of attractor geometry is given.
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Affiliation(s)
- Yong Zou
- Potsdam Institute for Climate Impact Research, P.O. Box 601203, 14412 Potsdam, Germany
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31
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Li W, Wang F, Havlin S, Stanley HE. Financial factor influence on scaling and memory of trading volume in stock market. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:046112. [PMID: 22181232 DOI: 10.1103/physreve.84.046112] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2011] [Indexed: 05/31/2023]
Abstract
We study the daily trading volume volatility of 17,197 stocks in the US stock markets during the period 1989-2008 and analyze the time return intervals τ between volume volatilities above a given threshold q. For different thresholds q, the probability density function P(q)(τ) scales with mean interval 〈τ〉 as P(q)(τ)=〈τ〉(-1)f(τ/〈τ〉), and the tails of the scaling function can be well approximated by a power law f(x)∼x(-γ). We also study the relation between the form of the distribution function P(q)(τ) and several financial factors: stock lifetime, market capitalization, volume, and trading value. We find a systematic tendency of P(q)(τ) associated with these factors, suggesting a multiscaling feature in the volume return intervals. We analyze the conditional probability P(q)(τ|τ(0)) for τ following a certain interval τ(0), and find that P(q)(τ|τ(0)) depends on τ(0) such that immediately following a short (long) return interval a second short (long) return interval tends to occur. We also find indications that there is a long-term correlation in the daily volume volatility. We compare our results to those found earlier for price volatility.
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Affiliation(s)
- Wei Li
- Center for Polymer Studies and Department of Physics, Boston University, Boston, Massachusetts 02215, USA
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32
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Schweigler T, Davidsen J. Clustering of extreme and recurrent events in deterministic chaotic systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:016202. [PMID: 21867268 DOI: 10.1103/physreve.84.016202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2010] [Indexed: 05/31/2023]
Abstract
We study the nontrivial clustering properties of extreme or recurrent events in the context of deterministic chaotic systems. We find that correlations between return times of such events can depend nonmonotonically on the threshold used to define the events, which leads to counterintuitive behavior. In particular, the distribution of the conditional return intervals can indicate clustering as well as repelling of extreme events for the same condition but different thresholds-in sharp contrast to what has been observed for stochastic processes with long-range correlations as well as for independent and identically distributed random variables. This has important implications for the time-dependent hazard assessment of extreme events, indicating that possible threshold dependencies should always be taken into account.
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Affiliation(s)
- Thomas Schweigler
- Department of Physics & Astronomy, University of Calgary, Calgary, Alberta, Canada
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33
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Palatella L, Pennetta C. Distribution of first-return times in correlated stationary signals. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:041102. [PMID: 21599110 DOI: 10.1103/physreve.83.041102] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2011] [Indexed: 05/30/2023]
Abstract
We present an analytical expression for the first return time (FRT) probability density function of a stationary correlated signal. Precisely, we start by considering a stationary discrete-time Ornstein-Uhlenbeck (OU) process with exponential decaying correlation function. The first return time distribution for this process is derived by adopting a well-known formalism typically used in the study of the FRT statistics for nonstationary diffusive processes. Then, by a subordination approach, we treat the case of a stationary process with power-law tail correlation function and diverging correlation time. We numerically test our findings, obtaining in both cases a good agreement with the analytical results. We notice that neither in the standard OU nor in the subordinated case a simple form of waiting time statistics, like stretched-exponential or similar, can be obtained while it is apparent that long time transient may shadow the final asymptotic behavior.
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Affiliation(s)
- Luigi Palatella
- CNISM UdR of Lecce and Dipartimento di Fisica, Università del Salento, Via Arnesano, I-73100 Lecce, Italy
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34
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Ren F, Zhou WX. Recurrence interval analysis of trading volumes. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010; 81:066107. [PMID: 20866478 DOI: 10.1103/physreve.81.066107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2010] [Indexed: 05/29/2023]
Abstract
We study the statistical properties of the recurrence intervals τ between successive trading volumes exceeding a certain threshold q. The recurrence interval analysis is carried out for the 20 liquid Chinese stocks covering a period from January 2000 to May 2009, and two Chinese indices from January 2003 to April 2009. Similar to the recurrence interval distribution of the price returns, the tail of the recurrence interval distribution of the trading volumes follows a power-law scaling, and the results are verified by the goodness-of-fit tests using the Kolmogorov-Smirnov (KS) statistic, the weighted KS statistic and the Cramér-von Mises criterion. The measurements of the conditional probability distribution and the detrended fluctuation function show that both short-term and long-term memory effects exist in the recurrence intervals between trading volumes. We further study the relationship between trading volumes and price returns based on the recurrence interval analysis method. It is found that large trading volumes are more likely to occur following large price returns, and the comovement between trading volumes and price returns is more pronounced for large trading volumes.
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Affiliation(s)
- Fei Ren
- School of Business, East China University of Science and Technology, Shanghai 200237, China
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35
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Liu C, Jiang ZQ, Ren F, Zhou WX. Scaling and memory in the return intervals of energy dissipation rate in three-dimensional fully developed turbulence. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:046304. [PMID: 19905433 DOI: 10.1103/physreve.80.046304] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2009] [Revised: 06/25/2009] [Indexed: 05/28/2023]
Abstract
We study the statistical properties of return intervals r between successive energy dissipation rates above a certain threshold Q in three-dimensional fully developed turbulence. We find that the distribution function P(Q)(r) scales with the mean return interval R(Q) as P(Q)(r)=R(Q)(-1)f(r/R(Q)) for R(Q) is an element of [50,500], where the scaling function f(x) has two power-law regimes. The scaling behavior is statistically validated by the Cramér-von Mises criterion. The return intervals are short-term and long-term correlated and possess multifractal nature. The Hurst index of the return intervals decays exponentially against R(Q), predicting that rare extreme events with R(Q)-->infinity are also long-term correlated with the Hurst index H(infinity)=0.639. These phenomenological findings have potential applications in risk assessment of extreme events at very large R(Q).
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Affiliation(s)
- Chuang Liu
- School of Business, East China University of Science and Technology, Shanghai, China
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36
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Luque B, Lacasa L, Ballesteros F, Luque J. Horizontal visibility graphs: exact results for random time series. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:046103. [PMID: 19905386 DOI: 10.1103/physreve.80.046103] [Citation(s) in RCA: 156] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2009] [Revised: 07/13/2009] [Indexed: 05/21/2023]
Abstract
The visibility algorithm has been recently introduced as a mapping between time series and complex networks. This procedure allows us to apply methods of complex network theory for characterizing time series. In this work we present the horizontal visibility algorithm, a geometrically simpler and analytically solvable version of our former algorithm, focusing on the mapping of random series (series of independent identically distributed random variables). After presenting some properties of the algorithm, we present exact results on the topological properties of graphs associated with random series, namely, the degree distribution, the clustering coefficient, and the mean path length. We show that the horizontal visibility algorithm stands as a simple method to discriminate randomness in time series since any random series maps to a graph with an exponential degree distribution of the shape P(k)=(1/3)(2/3)(k-2), independent of the probability distribution from which the series was generated. Accordingly, visibility graphs with other P(k) are related to nonrandom series. Numerical simulations confirm the accuracy of the theorems for finite series. In a second part, we show that the method is able to distinguish chaotic series from independent and identically distributed (i.i.d.) theory, studying the following situations: (i) noise-free low-dimensional chaotic series, (ii) low-dimensional noisy chaotic series, even in the presence of large amounts of noise, and (iii) high-dimensional chaotic series (coupled map lattice), without needs for additional techniques such as surrogate data or noise reduction methods. Finally, heuristic arguments are given to explain the topological properties of chaotic series, and several sequences that are conjectured to be random are analyzed.
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Affiliation(s)
- B Luque
- Departamento Matemática Aplicada y Estadística, ETSI Aeronáuticos, Universidad Politécnica de Madrid, Madrid, Spain
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37
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Nirmal Thyagu N, Gupte N. Transport and diffusion in the embedding map. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 79:066203. [PMID: 19658579 DOI: 10.1103/physreve.79.066203] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2008] [Revised: 04/20/2009] [Indexed: 05/28/2023]
Abstract
We study the transport properties of passive inertial particles in two-dimensional (2D) incompressible flows. Here, the particle dynamics is represented by the four-dimensional dissipative embedding map of the 2D area-preserving standard map which models the incompressible flow. The system is a model for impurity dynamics in a fluid and is characterized by two parameters, the inertia parameter alpha and the dissipation parameter gamma . The aerosol regime, where the particles are denser than the fluid, and the bubble regime, where they are less dense than the fluid, correspond to the parameter regimes alpha>1 and alpha<1 , respectively. Earlier studies of this system show a rich phase diagram with dynamical regimes corresponding to periodic orbits, chaotic structures, and mixed regimes. We obtain the statistical characterizers of transport for this system in these dynamical regimes. These are the recurrence time statistics, the diffusion exponent, and the distribution of jump lengths. The recurrence time distribution shows a power-law tail in the dynamical regimes, where there is preferential concentration of particles in sticky regions of the phase space, and an exponential decay in mixing regimes. The diffusion exponent shows behavior of three types-normal, subdiffusive, and superdiffusive, depending on the parameter regimes. Phase diagrams of the system are constructed to differentiate different types of diffusion behavior, as well as the behavior of the absolute drift. We correlate the dynamical regimes seen for the system at different parameter values with the transport properties observed at these regimes and in the behavior of the transients. This system also shows the existence of a crisis and unstable dimension variability at certain parameter values. The signature of the unstable dimension variability is seen in the statistical characterizers of transport. We discuss the implications of our results for realistic systems.
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Affiliation(s)
- N Nirmal Thyagu
- Department of Physics, Indian Institute of Technology Madras, Chennai 600036, India.
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Moloney NR, Davidsen J. Extreme value statistics and return intervals in long-range correlated uniform deviates. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 79:041131. [PMID: 19518197 DOI: 10.1103/physreve.79.041131] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2008] [Indexed: 05/27/2023]
Abstract
We study extremal statistics and return intervals in stationary long-range correlated sequences for which the underlying probability density function is bounded and uniform. The extremal statistics we consider (e.g., maximum relative to minimum) are such that the reference point from which the maximum is measured is itself a random quantity. We analytically calculate the limiting distributions for independent and identically distributed random variables, and use these as a reference point for correlated cases. The distributions are different from that of the maximum itself (i.e., a Weibull distribution), reflecting the fact that the distribution of the reference point either dominates over or convolves with the distribution of the maximum. The functional form of the limiting distributions is unaffected by correlations, although the convergence is slower. We show that our findings can be directly generalized to a wide class of stochastic processes. We also analyze return interval distributions, and compare them to recent conjectures of their functional form.
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Affiliation(s)
- N R Moloney
- Department of Physics and Astronomy, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada AB T2N 1N4.
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39
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Wang F, Yamasaki K, Havlin S, Stanley HE. Multifactor analysis of multiscaling in volatility return intervals. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 79:016103. [PMID: 19257103 DOI: 10.1103/physreve.79.016103] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2008] [Indexed: 05/27/2023]
Abstract
We study the volatility time series of 1137 most traded stocks in the U.S. stock markets for the two-year period 2001-2002 and analyze their return intervals tau , which are time intervals between volatilities above a given threshold q . We explore the probability density function of tau , P_(q)(tau) , assuming a stretched exponential function, P_(q)(tau) approximately e;(-tau;(gamma)) . We find that the exponent gamma depends on the threshold in the range between q=1 and 6 standard deviations of the volatility. This finding supports the multiscaling nature of the return interval distribution. To better understand the multiscaling origin, we study how gamma depends on four essential factors, capitalization, risk, number of trades, and return. We show that gamma depends on the capitalization, risk, and return but almost does not depend on the number of trades. This suggests that gamma relates to the portfolio selection but not on the market activity. To further characterize the multiscaling of individual stocks, we fit the moments of tau , mu_(m) identical with(tautau);(m);(1m) , in the range of 10<tau< or =100 by a power law, micro_(m) approximately tau;(delta). The exponent delta is found also to depend on the capitalization, risk, and return but not on the number of trades, and its tendency is opposite to that of gamma . Moreover, we show that delta decreases with increasing gamma approximately by a linear relation. The return intervals demonstrate the temporal structure of volatilities and our findings suggest that their multiscaling features may be helpful for portfolio optimization.
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Affiliation(s)
- Fengzhong Wang
- Center for Polymer Studies and Department of Physics, Boston University, Boston, Massachusetts 02215, USA
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40
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Santhanam MS, Kantz H. Return interval distribution of extreme events and long-term memory. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:051113. [PMID: 19113101 DOI: 10.1103/physreve.78.051113] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2008] [Revised: 07/08/2008] [Indexed: 05/27/2023]
Abstract
The distribution of recurrence times or return intervals between extreme events is important to characterize and understand the behavior of physical systems and phenomena in many disciplines. It is well known that many physical processes in nature and society display long-range correlations. Hence, in the last few years, considerable research effort has been directed towards studying the distribution of return intervals for long-range correlated time series. Based on numerical simulations, it was shown that the return interval distributions are of stretched exponential type. In this paper, we obtain an analytical expression for the distribution of return intervals in long-range correlated time series which holds good when the average return intervals are large. We show that the distribution is actually a product of power law and a stretched exponential form. We also discuss the regimes of validity and perform detailed studies on how the return interval distribution depends on the threshold used to define extreme events.
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Affiliation(s)
- M S Santhanam
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, Dresden 01187, Germany
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41
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Bogachev MI, Bunde A. Memory effects in the statistics of interoccurrence times between large returns in financial records. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:036114. [PMID: 18851112 DOI: 10.1103/physreve.78.036114] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2008] [Revised: 06/18/2008] [Indexed: 05/26/2023]
Abstract
We study the statistics of the interoccurrence times between events above some threshold Q in two kinds of multifractal data sets (multiplicative random cascades and multifractal random walks) with vanishing linear correlations. We show that in both data sets the relevant quantities (probability density functions and the autocorrelation function of the interoccurrence times, as well as the conditional return period) are governed by power laws with exponents that depend explicitly on the considered threshold. By studying a large number of representative financial records (market indices, stock prices, exchange rates, and commodities), we show explicitly that the interoccurrence times between large daily returns follow the same behavior, in a nearly quantitative manner. We conclude that this kind of behavior is a general consequence of the nonlinear memory inherent in the multifractal data sets.
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Affiliation(s)
- Mikhail I Bogachev
- Institut für Theoretische Physik III, Justus-Liebig-Universität Giessen, 35392 Giessen, Germany
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42
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Du L, Chen Q, Lai YC, Xu W. Observation-based control of rare intense events in the complex Ginzburg-Landau equation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:015201. [PMID: 18764007 DOI: 10.1103/physreve.78.015201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2008] [Indexed: 05/26/2023]
Abstract
We demonstrate that rare intense events in the complex Ginzburg-Landau equation can be suppressed by using only observation-based control. Our control strategy eliminates the requirements of a precise system model and prediction. Analytic insights for guiding the control and numerical verification are obtained. The issue of time delay is also addressed. We expect our results to provide insight into the challenging problem of harnessing spatially extended complex systems.
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Affiliation(s)
- Lin Du
- Department of Applied Mathematics, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, China
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43
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Wang F, Yamasaki K, Havlin S, Stanley HE. Indication of multiscaling in the volatility return intervals of stock markets. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:016109. [PMID: 18351917 DOI: 10.1103/physreve.77.016109] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2007] [Indexed: 05/26/2023]
Abstract
The distribution of the return intervals tau between price volatilities above a threshold height q for financial records has been approximated by a scaling behavior. To explore how accurate is the scaling and therefore understand the underlined nonlinear mechanism, we investigate intraday data sets of 500 stocks which consist of Standard & Poor's 500 index. We show that the cumulative distribution of return intervals has systematic deviations from scaling. We support this finding by studying the m -th moment micro_{m} identical with(tau/tau);{m};{1/m} , which show a certain trend with the mean interval tau . We generate surrogate records using the Schreiber method, and find that their cumulative distributions almost collapse to a single curve and moments are almost constant for most ranges of tau . Those substantial differences suggest that nonlinear correlations in the original volatility sequence account for the deviations from a single scaling law. We also find that the original and surrogate records exhibit slight tendencies for short and long tau , due to the discreteness and finite size effects of the records, respectively. To avoid as possible those effects for testing the multiscaling behavior, we investigate the moments in the range 10<tau< or =100 , and find that the exponent alpha from the power law fitting micro_{m} approximately tau;{alpha} has a narrow distribution around alpha not equal0 which depends on m for the 500 stocks. The distribution of alpha for the surrogate records are very narrow and centered around alpha=0 . This suggests that the return interval distribution exhibits multiscaling behavior due to the nonlinear correlations in the original volatility.
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Affiliation(s)
- Fengzhong Wang
- Department of Physics, Boston University, Boston, Massachusetts 02215, USA
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44
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Olla P. Return times for stochastic processes with power-law scaling. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 76:011122. [PMID: 17677425 DOI: 10.1103/physreve.76.011122] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2007] [Indexed: 05/16/2023]
Abstract
An analytical study of the return time distribution of extreme events for stochastic processes with power-law correlation has been carried out. The calculation is based on an epsilon expansion in the correlation exponent: C(t)=/t/-1+epsilon. The fixed point of the theory is associated with stretched exponential scaling of the distribution; analytical expressions have been provided in the preasymptotic regime. Also, the permanence time distribution appears to be characterized by stretched exponential scaling. The conditions for application of the theory to non-Gaussian processes have been analyzed and the relations with the issue of return times in the case of multifractal measures have been discussed.
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Affiliation(s)
- Piero Olla
- Istituto di Scienze dell'Atmosfera e del Clima ed Istituto Nazionale di Fisica Nucleare, Sezione di. Cagliari, I-09042 Monserrato, Italy
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45
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Little MA, McSharry PE, Roberts SJ, Costello DAE, Moroz IM. Exploiting nonlinear recurrence and fractal scaling properties for voice disorder detection. Biomed Eng Online 2007; 6:23. [PMID: 17594480 PMCID: PMC1913514 DOI: 10.1186/1475-925x-6-23] [Citation(s) in RCA: 194] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2007] [Accepted: 06/26/2007] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Voice disorders affect patients profoundly, and acoustic tools can potentially measure voice function objectively. Disordered sustained vowels exhibit wide-ranging phenomena, from nearly periodic to highly complex, aperiodic vibrations, and increased "breathiness". Modelling and surrogate data studies have shown significant nonlinear and non-Gaussian random properties in these sounds. Nonetheless, existing tools are limited to analysing voices displaying near periodicity, and do not account for this inherent biophysical nonlinearity and non-Gaussian randomness, often using linear signal processing methods insensitive to these properties. They do not directly measure the two main biophysical symptoms of disorder: complex nonlinear aperiodicity, and turbulent, aeroacoustic, non-Gaussian randomness. Often these tools cannot be applied to more severe disordered voices, limiting their clinical usefulness. METHODS This paper introduces two new tools to speech analysis: recurrence and fractal scaling, which overcome the range limitations of existing tools by addressing directly these two symptoms of disorder, together reproducing a "hoarseness" diagram. A simple bootstrapped classifier then uses these two features to distinguish normal from disordered voices. RESULTS On a large database of subjects with a wide variety of voice disorders, these new techniques can distinguish normal from disordered cases, using quadratic discriminant analysis, to overall correct classification performance of 91.8 +/- 2.0%. The true positive classification performance is 95.4 +/- 3.2%, and the true negative performance is 91.5 +/- 2.3% (95% confidence). This is shown to outperform all combinations of the most popular classical tools. CONCLUSION Given the very large number of arbitrary parameters and computational complexity of existing techniques, these new techniques are far simpler and yet achieve clinically useful classification performance using only a basic classification technique. They do so by exploiting the inherent nonlinearity and turbulent randomness in disordered voice signals. They are widely applicable to the whole range of disordered voice phenomena by design. These new measures could therefore be used for a variety of practical clinical purposes.
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Affiliation(s)
- Max A Little
- Systems Analysis, Modelling and Prediction Group, Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
- Pattern Analysis Research Group, Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
- Applied Dynamical Systems Research Group, Oxford Centre for Industrial and Applied Mathematics, Mathematics Institute, University of Oxford, Oxford OX1 3JP, UK
| | - Patrick E McSharry
- Systems Analysis, Modelling and Prediction Group, Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
| | - Stephen J Roberts
- Pattern Analysis Research Group, Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
| | - Declan AE Costello
- Milton Keynes General Hospital, Standing Way, Eaglestone, Milton Keynes, Bucks MK6 5LD, UK
| | - Irene M Moroz
- Applied Dynamical Systems Research Group, Oxford Centre for Industrial and Applied Mathematics, Mathematics Institute, University of Oxford, Oxford OX1 3JP, UK
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Grete P, Markus M. Multipeaked probability distributions of recurrence times. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 75:036207. [PMID: 17500769 DOI: 10.1103/physreve.75.036207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2006] [Revised: 09/04/2006] [Indexed: 05/15/2023]
Abstract
We determine probabilities of recurrence time into finite-sized, physically meaningful subsets of phase space. We consider three different autonomous chaotic systems: (i) scattering in a three-peaked potential, (ii) connected billiards, and (iii) Lorenz equations. We find multipeaked probability distributions, similar to the distributions found in (driven) stochastically resonant systems. In nondriven systems, such as ours, only monotonic decaying distributions (exponentials, stretched exponentials, power laws, and slight variations or combinations of these) have hitherto been reported. Discrete peaks in autonomous systems have as yet escaped attention in autonomous systems and correspond to specific trajectory subsets involving an integer number of loops.
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Affiliation(s)
- Patrick Grete
- Max-Planck-Institut für molekulare Physiologie, Postfach 500247, 44202 Dortmund, Germany
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Eichner JF, Kantelhardt JW, Bunde A, Havlin S. Statistics of return intervals in long-term correlated records. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 75:011128. [PMID: 17358131 DOI: 10.1103/physreve.75.011128] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2006] [Indexed: 05/14/2023]
Abstract
We consider long-term correlated data with several distribution densities (Gaussian, exponential, power law, and log normal) and various correlation exponents gamma (0<gamma<1) , and study the statistics of the return intervals r_{j} between events above some threshold q . We show that irrespective of the distribution, the return intervals are long-term correlated in the same way as the original record, but with additional uncorrelated noise. Due to this noise, the correlations are difficult to observe by the detrended fluctuation analysis (which exhibits a crossover behavior) but show up very clearly in the autocorrelation function. The distribution P_{q}(r) of the return intervals is characterized at large scales by a stretched exponential with exponent gamma , and at short scales by a power law with exponent gamma-1 . We discuss in detail the occurrence of finite-size effects for large threshold values for all considered distributions. We show that finite-size effects are most pronounced in exponentially distributed data sets where they can even mask the stretched exponential behavior in records of up to 10;{6} data points. Finally, in order to quantify the clustering of extreme events due to the long-term correlations in the return intervals, we study the conditional distribution function and the related moments. We find that they show pronounced memory effects, irrespective of the distribution of the original data.
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Affiliation(s)
- Jan F Eichner
- Institut für Theoretische Physik III, Justus-Liebig-Universität Giessen, 35392 Giessen, Germany
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Hallerberg S, Altmann EG, Holstein D, Kantz H. Precursors of extreme increments. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 75:016706. [PMID: 17358291 DOI: 10.1103/physreve.75.016706] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2005] [Revised: 09/12/2006] [Indexed: 05/14/2023]
Abstract
We investigate precursors and the predictability of extreme increments in a time series. The events we are focusing on consist in large increments within successive time steps. We are especially interested in understanding how the quality of the predictions depends on the strategy to choose precursors, on the size of the event, and on the correlation strength. We study the prediction of extreme increments analytically in an autoregressive process of order 1, and numerically in wind speed recordings and long-range correlated autoregressive moving average processes data. We evaluate the success of predictions via receiver-operator characteristics (ROC curves). Furthermore, we observe an increase of the quality of predictions with increasing event size and with decreasing correlation in all examples. Both effects can be understood by using the likelihood ratio as a summary index for smooth ROC curves.
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Affiliation(s)
- Sarah Hallerberg
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 38, D-01187 Dresden, Germany
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49
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Eichner JF, Kantelhardt JW, Bunde A, Havlin S. Extreme value statistics in records with long-term persistence. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 73:016130. [PMID: 16486239 DOI: 10.1103/physreve.73.016130] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2005] [Indexed: 05/06/2023]
Abstract
Many natural records exhibit long-term correlations characterized by a power-law decay of the autocorrelation function, C(s) approximately s-gamma, with time lag s and correlation exponent 0<gamma<1. We study how the presence of such correlations affects the statistics of the extreme events, i.e., the maximum values of the signal within time segments of the fixed duration R. We find numerically that (i) the integrated distribution function of the maxima converges to a Gumbel distribution for large R similar to uncorrelated signals, (ii) the deviations for finite R depend on the initial distribution of the records and on their correlation properties, (iii) the maxima series exhibit long-term correlations similar to those of the original data, and most notably (iv) the maxima distribution as well as the mean maxima significantly depend on the history, in particular on the previous maximum. The last item implies that conditional mean maxima and conditional maxima distributions (with the value of the previous maximum as condition) should be considered for an improved extreme event prediction. We provide indications that this dependence of the mean maxima on the previous maximum occurs also in observational long-term correlated records.
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Affiliation(s)
- Jan F Eichner
- Institut für Theoretische Physik III, Justus-Liebig-Universität Giessen, 35392 Giessen, Germany
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