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Yue Z, Wang S. Dynamics of a stochastic hybrid delay food chain model with jumps in an impulsive polluted environment. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2024; 21:186-213. [PMID: 38303419 DOI: 10.3934/mbe.2024009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
In this paper, a stochastic hybrid delay food chain model with jumps in an impulsive polluted environment is investigated. We obtain the sufficient and necessary conditions for persistence in mean and extinction of each species. The results show that the stochastic dynamics of the system are closely correlated with both time delays and environmental noises. Some numerical examples are introduced to illustrate the main results.
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Affiliation(s)
- Zeyan Yue
- School of Mathematics and Information Science, Henan Polytechnic University, Jiaozuo 454003, China
| | - Sheng Wang
- School of Mathematics and Information Science, Henan Polytechnic University, Jiaozuo 454003, China
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2
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Yang A, Wang H, Zhang T, Yuan S. Stochastic switches of eutrophication and oligotrophication: Modeling extreme weather via non-Gaussian Lévy noise. CHAOS (WOODBURY, N.Y.) 2022; 32:043116. [PMID: 35489869 DOI: 10.1063/5.0085560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 03/29/2022] [Indexed: 06/14/2023]
Abstract
Disturbances related to extreme weather events, such as hurricanes, heavy precipitation events, and droughts, are important drivers of evolution processes of a shallow lake ecosystem. A non-Gaussian α-stable Lévy process is esteemed to be the most suitable model to describe such extreme events. This paper incorporates extreme weather via α-stable Lévy noise into a parameterized lake model for phosphorus dynamics. We obtain the stationary probability density function of phosphorus concentration and examine the pivotal roles of α-stable Lévy noise on phosphorus dynamics. The switches between the oligotrophic state and the eutrophic state can be induced by the noise intensity σ, skewness parameter β, or stability index α. We calculate the mean first passage time, also referred to as the mean switching time, from the oligotrophic state to the eutrophic state. We observe that the increased noise intensity, skewness parameter, or stability index makes the mean switching time shorter and thus accelerates the switching process and facilitates lake eutrophication. When the frequency of extreme weather events exceeds a critical value, the intensity of extreme events becomes the most key factor for promoting lake eutrophication. As an application, we analyze the available data of Lake Taihu (2014-2018) for monthly precipitation, phosphorus, and chlorophyll-a concentrations and quantify the linkage among them using the Lévy-stable distribution. This study provides a fundamental framework to uncover the impact of any extreme climate event on aquatic nutrient status.
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Affiliation(s)
- Anji Yang
- College of Science, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Hao Wang
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, Alberta T6G 2G1, Canada
| | - Tonghua Zhang
- Department of Mathematics, Swinburne University of Technology, Hawthorn, Victoria 3122, Australia
| | - Sanling Yuan
- College of Science, University of Shanghai for Science and Technology, Shanghai 200093, China
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3
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Feng TJ, Mei J, Li C, Zheng XD, Lessard S, Tao Y. Stochastic evolutionary stability in matrix games with random payoffs. Phys Rev E 2022; 105:034303. [PMID: 35428156 DOI: 10.1103/physreve.105.034303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 02/23/2022] [Indexed: 06/14/2023]
Abstract
Evolutionary game theory and the concept of an evolutionarily stable strategy have been not only extensively developed and successfully applied to explain the evolution of animal behavior, but also widely used in economics and social sciences. Recently, in order to reveal the stochastic dynamical properties of evolutionary games in randomly fluctuating environments, the concept of stochastic evolutionary stability based on conditions for stochastic local stability for a fixation state was developed in the context of a symmetric matrix game with two phenotypes and random payoffs in pairwise interactions [Zheng et al., Phys. Rev. E 96, 032414 (2017)2470-004510.1103/PhysRevE.96.032414]. In this paper, we extend this study to more general situations, namely, multiphenotype symmetric as well as asymmetric matrix games with random payoffs. Conditions for stochastic local stability and stochastic evolutionary stability are established. Conditions for a fixation state to be stochastically unstable and almost everywhere stochastically unstable are distinguished in a multiphenotype setting according to the initial population state. Our results provide some alternative perspective and a more general theoretical framework for a better understanding of the evolution of animal behavior in a stochastic environment.
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Affiliation(s)
- Tian-Jiao Feng
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jie Mei
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Cong Li
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710072, China
| | - Xiu-Deng Zheng
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
| | - Sabin Lessard
- Department of Mathematics and Statistics, University of Montreal, Montreal, Quebec, H3C 3J7, Canada
| | - Yi Tao
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710072, China
- Institute of Biomedical Research, Yunnan University, Kunming 650091, China
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4
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Zhang C, Yang T, Qu SX. Impact of time delays and environmental noise on the extinction of a population dynamics model. THE EUROPEAN PHYSICAL JOURNAL. B 2021; 94:219. [PMID: 34751210 PMCID: PMC8565651 DOI: 10.1140/epjb/s10051-021-00219-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 09/27/2021] [Indexed: 06/13/2023]
Abstract
ABSTRACT In this paper, we examine a population model with carrying capacity, time delay, and sources of additive and multiplicative environmental noise. We find that time delay, noise sources and their correlation induce regime shifts and transitions between the population survival state and the extinction state. To explore the transition mechanism between these two states, we analyzed the shift time to extinction, or the delayed extinction time, of populations. The main finding is that the extinction transition time as a function of the noise intensity shows a maximum, indicating the existence of an appropriate noise intensity leading to a maximal delayed extinction. This nonmonotonic behavior, with a maximum, is a signature of the noise-enhanced stability phenomenon, observed in many physical and complex metastable systems. In particular, this maximum increases (or decreases) as the cross-correlation intensity or the delay time in the death process increases. Furthermore, the signal-to-noise ratio as a function of noise intensity shows a maximum, which is a signature of the stochastic resonance phenomenon in the population dynamics model investigated in the presence of time delay and environmental noise.
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Affiliation(s)
- Chun Zhang
- School of Physics and Information Technology, Shaanxi Normal University, Xi’an, 710062 People’s Republic of China
| | - Tao Yang
- Department of Engineering Mechanics, Northwestern Polytechnical University, Xi’an, 710072 People’s Republic of China
| | - Shi-Xian Qu
- School of Physics and Information Technology, Shaanxi Normal University, Xi’an, 710062 People’s Republic of China
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5
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van Kan A, Alexakis A, Brachet ME. Lévy on-off intermittency. Phys Rev E 2021; 103:052115. [PMID: 34134220 DOI: 10.1103/physreve.103.052115] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Accepted: 04/27/2021] [Indexed: 11/07/2022]
Abstract
We present an alternative form of intermittency, Lévy on-off intermittency, which arises from multiplicative α-stable white noise close to an instability threshold. We study this problem in the linear and nonlinear regimes, both theoretically and numerically, for the case of a pitchfork bifurcation with fluctuating growth rate. We compute the stationary distribution analytically and numerically from the associated fractional Fokker-Planck equation in the Stratonovich interpretation. We characterize the system in the parameter space (α,β) of the noise, with stability parameter α∈(0,2) and skewness parameter β∈[-1,1]. Five regimes are identified in this parameter space, in addition to the well-studied Gaussian case α=2. Three regimes are located at 1<α<2, where the noise has finite mean but infinite variance. They are differentiated by β and all display a critical transition at the deterministic instability threshold, with on-off intermittency close to onset. Critical exponents are computed from the stationary distribution. Each regime is characterized by a specific form of the density and specific critical exponents, which differ starkly from the Gaussian case. A finite or infinite number of integer-order moments may converge, depending on parameters. Two more regimes are found at 0<α≤1. There, the mean of the noise diverges, and no critical transition occurs. In one case, the origin is always unstable, independently of the distance μ from the deterministic threshold. In the other case, the origin is conversely always stable, independently of μ. We thus demonstrate that an instability subject to nonequilibrium, power-law-distributed fluctuations can display substantially different properties than for Gaussian thermal fluctuations, in terms of statistics and critical behavior.
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Affiliation(s)
- Adrian van Kan
- Laboratoire de Physique de l'Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Alexandros Alexakis
- Laboratoire de Physique de l'Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Marc-Etienne Brachet
- Laboratoire de Physique de l'Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
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6
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Symmetry Analysis of the Stochastic Logistic Equation. Symmetry (Basel) 2020. [DOI: 10.3390/sym12060973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
We apply the recently developed theory of symmetry of stochastic differential equations to stochastic versions of the logistic equation; these may have environmental or demographical noise, or both—in which case we speak of the complete model. We study all these cases, both with constant and with non-constant noise amplitude, and show that the only one in which there are nontrivial symmetries is that of the stochastic logistic equation with (constant amplitude) environmental noise. In this case, the general theory of symmetry of stochastic differential equations is used to obtain an explicit integration, i.e., an explicit formula for the process in terms of any single realization of the driving Wiener process.
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Arumugam R, Sarkar S, Banerjee T, Sinha S, Dutta PS. Dynamic environment-induced multistability and critical transition in a metacommunity ecosystem. Phys Rev E 2019; 99:032216. [PMID: 30999527 DOI: 10.1103/physreve.99.032216] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Indexed: 06/09/2023]
Abstract
We study a metacommunity model of consumer-resource populations coupled via dispersal under an environment-dependent framework, and we explore the occurrence of multistability and critical transition. By emphasizing two magnitudes acting on a dynamic environment at temporal and spatial scales, the coupled system with simple diffusive coupling and the nonlinear environmental coupling enables various interesting complex dynamics such as bistability, multistability, and critical transitions. Using the basin stability measure, we find the probability of attaining each alternative state in a multistable region. In addition, critical transitions (one from a high to a low species density and the other from a low to a high species density) are identified at different magnitudes in the presence of stochastic fluctuations. We also explore the robustness of critical slowing-down indicators, e.g., lag-1 autocorrelation and variance, to forewarn the critical transition in the metacommunity model. Further, a network structure also identifies synchronization and multiclustering for a different choice of initial conditions. In contrast with the earlier studies on dynamic environmental coupling, our results based on the defined magnitudes provide important insights into environmental heterogeneity, which determines the set of environmental conditions to predict metacommunity stability and persistence.
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Affiliation(s)
- Ramesh Arumugam
- Department of Mathematics, Indian Institute of Technology Ropar, Rupnagar 140 001, Punjab, India
- Department of Biology, McGill University, Montreal, Quebec, Canada H3A 1B1
| | - Sukanta Sarkar
- Department of Mathematics, Indian Institute of Technology Ropar, Rupnagar 140 001, Punjab, India
| | - Tanmoy Banerjee
- Chaos and Complex Systems Research Laboratory, Department of Physics, University of Burdwan, Burdwan 713 104, West Bengal, India
| | - Sudipta Sinha
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar 140 001, Punjab, India
| | - Partha Sharathi Dutta
- Department of Mathematics, Indian Institute of Technology Ropar, Rupnagar 140 001, Punjab, India
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8
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Wang H, Cheng X, Duan J, Kurths J, Li X. Likelihood for transcriptions in a genetic regulatory system under asymmetric stable Lévy noise. CHAOS (WOODBURY, N.Y.) 2018; 28:013121. [PMID: 29390613 DOI: 10.1063/1.5010026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
This work is devoted to investigating the evolution of concentration in a genetic regulation system, when the synthesis reaction rate is under additive and multiplicative asymmetric stable Lévy fluctuations. By focusing on the impact of skewness (i.e., non-symmetry) in the probability distributions of noise, we find that via examining the mean first exit time (MFET) and the first escape probability (FEP), the asymmetric fluctuations, interacting with nonlinearity in the system, lead to peculiar likelihood for transcription. This includes, in the additive noise case, realizing higher likelihood of transcription for larger positive skewness (i.e., asymmetry) index β, causing a stochastic bifurcation at the non-Gaussianity index value α = 1 (i.e., it is a separating point or line for the likelihood for transcription), and achieving a turning point at the threshold value β≈-0.5 (i.e., beyond which the likelihood for transcription suddenly reversed for α values). The stochastic bifurcation and turning point phenomena do not occur in the symmetric noise case (β = 0). While in the multiplicative noise case, non-Gaussianity index value α = 1 is a separating point or line for both the MFET and the FEP. We also investigate the noise enhanced stability phenomenon. Additionally, we are able to specify the regions in the whole parameter space for the asymmetric noise, in which we attain desired likelihood for transcription. We have conducted a series of numerical experiments in "regulating" the likelihood of gene transcription by tuning asymmetric stable Lévy noise indexes. This work offers insights for possible ways of achieving gene regulation in experimental research.
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Affiliation(s)
- Hui Wang
- Center for Mathematical Sciences and School of Mathematics and Statistics, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Xiujun Cheng
- Center for Mathematical Sciences and School of Mathematics and Statistics, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Jinqiao Duan
- Center for Mathematical Sciences and School of Mathematics and Statistics, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Jürgen Kurths
- Department of Physics, Humboldt University of Berlin, Newtonstrate 15, 12489 Berlin, Germany
| | - Xiaofan Li
- Department of Applied Mathematics, Illinois Institute of Technology, Chicago, Illinois 60616, USA
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9
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Xu P, Jin Y, Xiao S. Stochastic resonance in a delayed triple-well potential driven by correlated noises. CHAOS (WOODBURY, N.Y.) 2017; 27:113109. [PMID: 29195325 DOI: 10.1063/1.4994638] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In this paper, we investigate stochastic resonance (SR) in a delayed triple-well potential subject to correlated noises and a harmonic signal. The stationary probability density, together with the response amplitude of the system, is obtained by using the small time delay approximation. It is found that the time delay, noise intensities, and the cross-correlation between noises can induce the occurrence of the transition. Moreover, the appropriate choice of noise intensities and time delay can improve the output of the system, enhance the SR effect, and lead to the phenomenon of noise enhanced stability. Especially, the stochastic multi-resonance phenomenon is observed when the multiplicative and additive noises are correlated. Finally, the theoretical results are well verified through numerical simulations.
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Affiliation(s)
- Pengfei Xu
- Department of Mechanics, Beijing Institute of Technology, Beijing 100081, China
| | - Yanfei Jin
- Department of Mechanics, Beijing Institute of Technology, Beijing 100081, China
| | - Shaomin Xiao
- Department of Mechanics, Beijing Institute of Technology, Beijing 100081, China
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10
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Zheng XD, Li C, Lessard S, Tao Y. Evolutionary stability concepts in a stochastic environment. Phys Rev E 2017; 96:032414. [PMID: 29347009 DOI: 10.1103/physreve.96.032414] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Indexed: 06/07/2023]
Abstract
Over the past 30 years, evolutionary game theory and the concept of an evolutionarily stable strategy have been not only extensively developed and successfully applied to explain the evolution of animal behaviors, but also widely used in economics and social sciences. Nonetheless, the stochastic dynamical properties of evolutionary games in randomly fluctuating environments are still unclear. In this study, we investigate conditions for stochastic local stability of fixation states and constant interior equilibria in a two-phenotype model with random payoffs following pairwise interactions. Based on this model, we develop the concepts of stochastic evolutionary stability (SES) and stochastic convergence stability (SCS). We show that the condition for a pure strategy to be SES and SCS is more stringent than in a constant environment, while the condition for a constant mixed strategy to be SES is less stringent than the condition to be SCS, which is less stringent than the condition in a constant environment.
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Affiliation(s)
- Xiu-Deng Zheng
- Key Laboratory of Animal Ecology and Conservation Biology, Centre for Computational and Evolutionary Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
| | - Cong Li
- Department of Mathematics and Statistics, University of Montreal, Montreal QC H3C 3J7, Canada
| | - Sabin Lessard
- Department of Mathematics and Statistics, University of Montreal, Montreal QC H3C 3J7, Canada
| | - Yi Tao
- Key Laboratory of Animal Ecology and Conservation Biology, Centre for Computational and Evolutionary Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100101, China
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11
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Srokowski T. Random walk in nonhomogeneous environments: A possible approach to human and animal mobility. Phys Rev E 2017; 95:032133. [PMID: 28415191 DOI: 10.1103/physreve.95.032133] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Indexed: 11/07/2022]
Abstract
The random walk process in a nonhomogeneous medium, characterized by a Lévy stable distribution of jump length, is discussed. The width depends on a position: either before the jump or after that. In the latter case, the density slope is affected by the variable width and the variance may be finite; then all kinds of the anomalous diffusion are predicted. In the former case, only the time characteristics are sensitive to the variable width. The corresponding Langevin equation with different interpretations of the multiplicative noise is discussed. The dependence of the distribution width on position after jump is interpreted in terms of cognitive abilities and related to such problems as migration in a human population and foraging habits of animals.
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Affiliation(s)
- Tomasz Srokowski
- Institute of Nuclear Physics, Polish Academy of Sciences, PL 31-342 Kraków, Poland
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12
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Zaburdaev V, Fouxon I, Denisov S, Barkai E. Superdiffusive Dispersals Impart the Geometry of Underlying Random Walks. PHYSICAL REVIEW LETTERS 2016; 117:270601. [PMID: 28084765 DOI: 10.1103/physrevlett.117.270601] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Indexed: 06/06/2023]
Abstract
It is recognized now that a variety of real-life phenomena ranging from diffusion of cold atoms to the motion of humans exhibit dispersal faster than normal diffusion. Lévy walks is a model that excelled in describing such superdiffusive behaviors albeit in one dimension. Here we show that, in contrast to standard random walks, the microscopic geometry of planar superdiffusive Lévy walks is imprinted in the asymptotic distribution of the walkers. The geometry of the underlying walk can be inferred from trajectories of the walkers by calculating the analogue of the Pearson coefficient.
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Affiliation(s)
- V Zaburdaev
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, D-01187 Dresden, Germany
- Institute of Supercomputing Technologies, Lobachevsky State University of Nizhny Novgorod, 603140 Nizhny Novgorod, Russia
| | - I Fouxon
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - S Denisov
- Department of Applied Mathematics, Lobachevsky State University of Nizhny Novgorod, 603140 Nizhny Novgorod, Russia
- Sumy State University, Rimsky-Korsakov Street 2, 40007 Sumy, Ukraine
- Institute of Physics, University of Augsburg, Universitätsstrasse 1, D-86135 Augsburg, Germany
| | - E Barkai
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
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14
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Raja Sekhara Rao P, Naresh Kumar M. A dynamic model for infectious diseases: The role of vaccination and treatment. CHAOS, SOLITONS, AND FRACTALS 2015; 75:34-49. [PMID: 32288363 PMCID: PMC7126230 DOI: 10.1016/j.chaos.2015.02.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2014] [Accepted: 02/02/2015] [Indexed: 06/11/2023]
Abstract
Understanding dynamics of an infectious disease helps in designing appropriate strategies for containing its spread in a population. Recent mathematical models are aimed at studying dynamics of some specific types of infectious diseases. In this paper we propose a new model for infectious diseases spread having susceptible, infected, and recovered populations and study its dynamics in presence of incubation delays and relapse of the disease. The influence of treatment and vaccination efforts on the spread of infection in presence of time delays are studied. Sufficient conditions for local stability of the equilibria and change of stability are derived in various cases. The problem of global stability is studied for an important special case of the model. Simulations carried out in this study brought out the importance of treatment rate in controlling the disease spread. It is observed that incubation delays have influence on the system even under enhanced vaccination. The present study has clearly brought out the fact that treatment rate even in presence of time delays would contain the disease as compared to popular belief that eradication can only be done through vaccination.
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Affiliation(s)
- P. Raja Sekhara Rao
- Department of Mathematics, Government Polytechnic, Addanki, A.P. 523 201, India
| | - M. Naresh Kumar
- Software Group, National Remote Sensing Center (ISRO), Hyderabad, Telangana 500 037, India
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15
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Analyzing the spatial dynamics of a prey–predator lattice model with social behavior. ECOLOGICAL COMPLEXITY 2015. [DOI: 10.1016/j.ecocom.2015.03.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Lisowski B, Valenti D, Spagnolo B, Bier M, Gudowska-Nowak E. Stepping molecular motor amid Lévy white noise. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:042713. [PMID: 25974533 DOI: 10.1103/physreve.91.042713] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2014] [Indexed: 06/04/2023]
Abstract
We consider a model of a stepping molecular motor consisting of two connected heads. Directional motion of the stepper takes place along a one-dimensional track. Each head is subject to a periodic potential without spatial reflection symmetry. When the potential for one head is switched on, it is switched off for the other head. Additionally, the system is subject to the influence of symmetric, white Lévy noise that mimics the action of external random forcing. The stepper exhibits motion with a preferred direction which is examined by analyzing the median of the displacement of a midpoint between the positions of the two heads. We study the modified dynamics of the stepper by numerical simulations. We find flux reversals as noise parameters are changed. Speed and direction appear to very sensitively depend on characteristics of the noise.
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Affiliation(s)
- Bartosz Lisowski
- M. Smoluchowski Institute of Physics Jagiellonian University, Kraków, Poland and Unit of Pharmacoepidemiology and Pharmacoeconomics, Faculty of Pharmacy, Jagiellonian University Medical College, Kraków, Poland
| | - Davide Valenti
- Dipartimento di Fisica e Chimica, Group of Interdisciplinary Theoretical Physics, Viale delle Scienze, Ed. 18, Università di Palermo and CNISM, Unità di Palermo, Palermo I-90128, Italy and Istituto Nazionale di Fisica Nucleare, Sezione di Catania, Via S. Sofia 64, I-90123 Catania, Italy
| | - Bernardo Spagnolo
- Dipartimento di Fisica e Chimica, Group of Interdisciplinary Theoretical Physics, Viale delle Scienze, Ed. 18, Università di Palermo and CNISM, Unità di Palermo, Palermo I-90128, Italy and Istituto Nazionale di Fisica Nucleare, Sezione di Catania, Via S. Sofia 64, I-90123 Catania, Italy
| | - Martin Bier
- Department of Physics, East Carolina University, Greenville, North Carolina 27858, USA
| | - Ewa Gudowska-Nowak
- Mark Kac Center for Complex Systems Research and Malopolska Center of Biotechnology, Jagiellonian University, Kraków, Poland
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17
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Valenti D, Denaro G, Spagnolo B, Conversano F, Brunet C. How diffusivity, thermocline and incident light intensity modulate the dynamics of deep chlorophyll maximum in Tyrrhenian Sea. PLoS One 2015; 10:e0115468. [PMID: 25629963 PMCID: PMC4309620 DOI: 10.1371/journal.pone.0115468] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2014] [Accepted: 11/23/2014] [Indexed: 11/22/2022] Open
Abstract
During the last few years theoretical works have shed new light and proposed new hypotheses on the mechanisms which regulate the spatio-temporal behaviour of phytoplankton communities in marine pelagic ecosystems. Despite this, relevant physical and biological issues, such as effects of the time-dependent mixing in the upper layer, competition between groups, and dynamics of non-stationary deep chlorophyll maxima, are still open questions. In this work, we analyze the spatio-temporal behaviour of five phytoplankton populations in a real marine ecosystem by using a one-dimensional reaction-diffusion-taxis model. The study is performed, taking into account the seasonal variations of environmental variables, such as light intensity, thickness of upper mixed layer and profiles of vertical turbulent diffusivity, obtained starting from experimental findings. Theoretical distributions of phytoplankton cell concentration was converted in chlorophyll concentration, and compared with the experimental profiles measured in a site of the Tyrrhenian Sea at four different times (seasons) of the year, during four different oceanographic cruises. As a result we find a good agreement between theoretical and experimental distributions of chlorophyll concentration. In particular, theoretical results reveal that the seasonal changes of environmental variables play a key role in the phytoplankton distribution and determine the properties of the deep chlorophyll maximum. This study could be extended to other marine ecosystems to predict future changes in the phytoplankton biomass due to global warming, in view of devising strategies to prevent the decline of the primary production and the consequent decrease of fish species.
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Affiliation(s)
- Davide Valenti
- Dipartimento di Fisica e Chimica, Università di Palermo, Group of Interdisciplinary Theoretical Physics and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, Unità di Palermo, Palermo, Italy
- * E-mail:
| | - Giovanni Denaro
- Dipartimento di Fisica e Chimica, Università di Palermo, Group of Interdisciplinary Theoretical Physics and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, Unità di Palermo, Palermo, Italy
| | - Bernardo Spagnolo
- Dipartimento di Fisica e Chimica, Università di Palermo, Group of Interdisciplinary Theoretical Physics and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, Unità di Palermo, Palermo, Italy
- Istituto Nazionale di Fisica Nucleare, Sezione di Catania, Catania, Italy
- Radiophysics Department, Lobachevsky State University, Nizhniy Novgorod, Russia
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18
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Denaro G, Valenti D, Spagnolo B, Basilone G, Mazzola S, Zgozi SW, Aronica S, Bonanno A. Dynamics of two picophytoplankton groups in mediterranean sea: analysis of the deep chlorophyll maximum by a stochastic advection-reaction-diffusion model. PLoS One 2013; 8:e66765. [PMID: 23826130 PMCID: PMC3691268 DOI: 10.1371/journal.pone.0066765] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Accepted: 05/13/2013] [Indexed: 11/25/2022] Open
Abstract
A stochastic advection-reaction-diffusion model with terms of multiplicative white Gaussian noise, valid for weakly mixed waters, is studied to obtain the vertical stationary spatial distributions of two groups of picophytoplankton, i.e., picoeukaryotes and Prochlorococcus, which account about for 60% of total chlorophyll on average in Mediterranean Sea. By numerically solving the equations of the model, we analyze the one-dimensional spatio-temporal dynamics of the total picophytoplankton biomass and nutrient concentration along the water column at different depths. In particular, we integrate the equations over a time interval long enough, obtaining the steady spatial distributions for the cell concentrations of the two picophytoplankton groups. The results are converted into chlorophyll a and divinil chlorophyll a concentrations and compared with experimental data collected in two different sites of the Sicily Channel (southern Mediterranean Sea). The comparison shows that real distributions are well reproduced by theoretical profiles. Specifically, position, shape and magnitude of the theoretical deep chlorophyll maximum exhibit a good agreement with the experimental values.
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Affiliation(s)
- Giovanni Denaro
- Dipartimento di Fisica e Chimica, Università di Palermo, Group of Interdisciplinary Physics and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, Unità di Palermo, Palermo, Italy
| | - Davide Valenti
- Dipartimento di Fisica e Chimica, Università di Palermo, Group of Interdisciplinary Physics and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, Unità di Palermo, Palermo, Italy
| | - Bernardo Spagnolo
- Dipartimento di Fisica e Chimica, Università di Palermo, Group of Interdisciplinary Physics and Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, Unità di Palermo, Palermo, Italy
| | - Gualtiero Basilone
- Istituto per l’Ambiente Marino Costiero, Centro Nazionale delle Ricerche, Unità Operativa di Supporto di Capo Granitola, Campobello di Mazara, Trapani, Italy
| | - Salvatore Mazzola
- Istituto per l’Ambiente Marino Costiero, Centro Nazionale delle Ricerche, Unità Operativa di Supporto di Capo Granitola, Campobello di Mazara, Trapani, Italy
| | | | - Salvatore Aronica
- Istituto per l’Ambiente Marino Costiero, Centro Nazionale delle Ricerche, Unità Operativa di Supporto di Capo Granitola, Campobello di Mazara, Trapani, Italy
| | - Angelo Bonanno
- Istituto per l’Ambiente Marino Costiero, Centro Nazionale delle Ricerche, Unità Operativa di Supporto di Capo Granitola, Campobello di Mazara, Trapani, Italy
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19
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Tang Y, Gao H, Zou W, Kurths J. Pinning noise-induced stochastic resonance. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:062920. [PMID: 23848761 DOI: 10.1103/physreve.87.062920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2013] [Indexed: 06/02/2023]
Abstract
This paper proposes the concept of pinning noise and then investigates the phenomenon of stochastic resonance of coupled complex systems driven by pinning noise, where the noise has an α-stable distribution. Two kinds of pinning noise are taken into account: partial noise and switching noise. In particular, we establish a connection between switching noise and global noise when Gaussian noise is considered. It is shown that switching noise can not only achieve a stronger resonance effect, but it is also more robust to induce the resonance effect than partial noise.
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Affiliation(s)
- Yang Tang
- Institute of Physics, Humboldt University Berlin, Berlin D-12489, Germany.
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20
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Tang Y, Yuan R, Ma Y. Dynamical behaviors determined by the Lyapunov function in competitive Lotka-Volterra systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:012708. [PMID: 23410360 DOI: 10.1103/physreve.87.012708] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2012] [Revised: 12/10/2012] [Indexed: 06/01/2023]
Abstract
Dynamical behaviors of the competitive Lotka-Volterra system even for 3 species are not fully understood. In this paper, we study this problem from the perspective of the Lyapunov function. We construct explicitly the Lyapunov function using three examples of the competitive Lotka-Volterra system for the whole state space: (1) the general 2-species case, (2) a 3-species model, and (3) the model of May-Leonard. The basins of attraction for these examples are demonstrated, including cases with bistability and cyclical behavior. The first two examples are the generalized gradient system, where the energy dissipation may not follow the gradient of the Lyapunov function. In addition, under a new type of stochastic interpretation, the Lyapunov function also leads to the Boltzmann-Gibbs distribution on the final steady state when multiplicative noise is added.
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Affiliation(s)
- Ying Tang
- ZhiYuan College, Shanghai Jiao Tong University, China.
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21
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Zhang XC, Sun GQ, Jin Z. Spatial dynamics in a predator-prey model with Beddington-DeAngelis functional response. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:021924. [PMID: 22463261 DOI: 10.1103/physreve.85.021924] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2011] [Revised: 12/31/2011] [Indexed: 05/31/2023]
Abstract
In this paper spatial dynamics of the Beddington-DeAngelis predator-prey model is investigated. We analyze the linear stability and obtain the condition of Turing instability of this model. Moreover, we deduce the amplitude equations and determine the stability of different patterns. In Turing space, we found that this model has coexistence of H(0) hexagon patterns and stripe patterns, H(π) hexagon patterns, and H(0) hexagon patterns. To better describe the real ecosystem, we consider the ecosystem as an open system and take the environmental noise into account. It is found that noise can decrease the number of the patterns and make the patterns more regular. What is more, noise can induce two kinds of typical pattern transitions. One is from the H(π) hexagon patterns to the regular stripe patterns, and the other is from the coexistence of H(0) hexagon patterns and stripe patterns to the regular stripe patterns. The obtained results enrich the finding in the Beddington-DeAngelis predator-prey model well.
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Affiliation(s)
- Xiao-Chong Zhang
- Department of Mathematics, North University of China, Taiyuan, Shan'xi 030051, People's Republic of China.
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22
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Srokowski T. Anomalous diffusion in systems driven by the stable Lévy noise with a finite noise relaxation time and inertia. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:021118. [PMID: 22463164 DOI: 10.1103/physreve.85.021118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2011] [Revised: 11/23/2011] [Indexed: 05/31/2023]
Abstract
Dynamical systems driven by a general Lévy stable noise are considered. The inertia is included and the noise, represented by a generalized Ornstein-Uhlenbeck process, has a finite relaxation time. A general linear problem (the additive noise) is solved: the resulting distribution converges with time to the distribution for the white-noise, massless case. Moreover, a multiplicative noise is discussed. It can make the distribution steeper and the variance, which is finite, depends sublinearly on time (subdiffusion). For a small mass, a white-noise limit corresponds to the Stratonovich interpretation. On the other hand, the distribution tails agree with the Itô interpretation if the inertia is very large. An escape time from the potential well is calculated.
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Affiliation(s)
- Tomasz Srokowski
- Institute of Nuclear Physics, Polish Academy of Sciences, PL-31-342 Kraków, Poland
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23
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Chichigina OA, Dubkov AA, Valenti D, Spagnolo B. Stability in a system subject to noise with regulated periodicity. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:021134. [PMID: 21928976 DOI: 10.1103/physreve.84.021134] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2011] [Indexed: 05/31/2023]
Abstract
The stability of a simple dynamical system subject to multiplicative one-side pulse noise with hidden periodicity is investigated both analytically and numerically. The stability analysis is based on the exact result for the characteristic functional of the renewal pulse process. The influence of the memory effects on the stability condition is analyzed for two cases: (i) the dead-time-distorted poissonian process, and (ii) the renewal process with Pareto distribution. We show that, for fixed noise intensity, the system can be stable when the noise is characterized by high periodicity and unstable at low periodicity.
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Affiliation(s)
- Olga A Chichigina
- Physics Department, Lomonosov Moscow State University, 119992 Moscow, Russia.
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