Dynamic self-assembly and directed flow of rotating colloids in microchannels

Motility of Synthetic Cells from Engineered Lipids

Synthetic cells are artificial systems that resemble natural cells. Significant efforts have been made over the years to construct synthetic protocells that can mimic biological mechanisms and perform various complex processes. These include compartmentalization, metabolism, energy supply, communication, and gene reproduction. Cell motility is also of great importance, as nature uses elegant mechanisms for intracellular trafficking, immune response, and embryogenesis. In this review, we discuss the motility of synthetic cells made from lipid vesicles and relevant molecular mechanisms. Synthetic cell motion may be classified into surface-based or solution-based depending on whether it involves interactions with surfaces or movement in fluids. Collective migration behaviors have also been demonstrated. The swarm motion requires additional mechanisms for intercellular signaling and directional motility that enable communication and coordination among the synthetic vesicles. In addition, intracellular trafficking for molecular transport has been reconstituted in minimal cells with the help of DNA nanotechnology. These efforts demonstrate synthetic cells that can move, detect, respond, and interact. We envision that new developments in protocell motility will enhance our understanding of biological processes and be instrumental in bioengineering and therapeutic applications.

Cargo carrying bacteria at interfaces

The displacements of ensembles of colloids at the interface between oil and suspensions of the bacterium Pseudomonas aeruginosa PA14ΔpelA indicate enhanced colloid mobilities and apparently diffusive motion driven by interactions with the bacteria. However, inspection of individual trajectories of ∼500 particles reveals prolonged, directed displacements inconsistent with purely hydrodynamic interactions between swimming bacteria and colloids. Analysis of the properties of colloid paths indicates trajectories can be sorted into four distinct categories, including diffusive, persistent, curly, and mixed trajectory types. Non-diffusive trajectories are the norm, comprising 2/3 of the observed trajectories. Imaging of colloids in the interface reveals anisotropic assemblies formed by colloids decorated with one or more adhered bacteria that drive the colloids along these paths. The trajectories and enhanced transport result from individual colloids being moved as cargo by these adhered bacteria. The implications of these structures and open questions for interfacial transport are discussed and related to the active colloid literature.

Artificial living crystals in confined environment

Similar to the spontaneous formation of colonies of bacteria, flocks of birds, or schools of fish, "living crystals" can be formed by artificial self-propelled particles such as Janus colloids. Unlike usual solids, these "crystals" are far from thermodynamic equilibrium. They fluctuate in time forming a crystalline structure, breaking apart and re-forming again. We propose a method to stabilize living crystals by applying a weak confinement potential that does not suppress the ability of the particles to perform self-propelled motion, but it stabilizes the structure and shape of the dynamical clusters. This gives rise to such configurations of living crystals as "living shells" formed by Janus colloids. Moreover, the shape of the stable living clusters can be controlled by tuning the potential strength. Our proposal can be verified experimentally with either artificial microswimmers such as Janus colloids, or with living active matter.

Comparison of different coupling schemes between counterions and charged nanoparticles in multiparticle collision dynamics

We applied the multiparticle collision dynamics (MPC) simulation technique to highly asymmetric electrolytes in solution, i.e., charged nanoparticles and their counterions in a solvent. These systems belong to a domain of solute size which ranges between the electrolyte and the colloidal domains, where most analytical theories are expected to fail, and efficient simulation techniques are still missing. MPC is a mesoscopic simulation method which mimics hydrodynamics properties of a fluid, includes thermal fluctuations, and can be coupled to a molecular dynamics of solutes. We took advantage of the size asymmetry between nanoparticles and counterions to treat the coupling between solutes and the solvent bath within the MPC method. Counterions were coupled to the solvent bath during the collision step and nanoparticles either through a direct interaction force or with stochastic rotation rules which mimic stick boundary conditions. Moreover, we adapted the simulation procedure to address the issue of the strong electrostatic interactions between solutes of opposite charges. We show that the short-ranged repulsion between counterions and nanoparticles can be modeled by stochastic reflection rules. This simulation scheme is very efficient from a computational point of view. We have also computed the transport coefficients for various densities. The diffusion of counterions was found in one case to increase slightly with the volume fraction of nanoparticles. The deviation of the electric conductivity from the ideal behavior (solutes at infinite dilution without any direct interactions) is found to be strong.

Elasticity-induced force reversal between active spinning particles in dense passive media

The self-organization of active particles is governed by their dynamic effective interactions. Such interactions are controlled by the medium in which such active agents reside. Here we study the interactions between active agents in a dense non-active medium. Our system consists of actuated, spinning, active particles embedded in a dense monolayer of passive, or non-active, particles. We demonstrate that the presence of the passive monolayer alters markedly the properties of the system and results in a reversal of the forces between active spinning particles from repulsive to attractive. The origin of such reversal is due to the coupling between the active stresses and elasticity of the system. This discovery provides a mechanism for the interaction between active agents in complex and structured media, opening up opportunities to tune the interaction range and directionality via the mechanical properties of the medium.

Physics out-of-equilibrium is necessary to understand a variety of interactions, for example in biological systems. Here, the authors show that the interactions between non-Brownian active spinning particles can change from repulsive to attractive depending on the properties of the surrounding passive medium.

Collective waves in dense and confined microfluidic droplet arrays

Excitation mechanisms for collective waves in confined dense one-dimensional microfluidic droplet arrays are investigated by experiments and computer simulations. We demonstrate that distinct modes can be excited by creating specific 'defect' patterns in flowing droplet trains. Excited longitudinal modes exhibit a short-lived cascade of pairs of laterally displacing droplets. Transversely excited modes obey the dispersion relation of microfluidic phonons and induce a coupling between longitudinal and transverse modes, whose origin is the hydrodynamic interaction of the droplets with the confining walls. Moreover, we investigate the long-time behaviour of the oscillations and discuss possible mechanisms for the onset of instabilities. Our findings demonstrate that the collective dynamics of microfluidic droplet ensembles can be studied particularly well in dense and confined systems. Experimentally, the ability to control microfluidic droplets may allow the modulation of the refractive index of optofluidic crystals, which is a promising approach for the production of dynamically programmable metamaterials.

Purely hydrodynamic ordering of rotating disks at a finite Reynolds number

Self-organization of moving objects in hydrodynamic environments has recently attracted considerable attention in connection to natural phenomena and living systems. However, the underlying physical mechanism is much less clear due to the intrinsically nonequilibrium nature, compared with self-organization of thermal systems. Hydrodynamic interactions are believed to play a crucial role in such phenomena. To elucidate the fundamental physical nature of many-body hydrodynamic interactions at a finite Reynolds number, here we study a system of co-rotating hard disks in a two-dimensional viscous fluid at zero temperature. Despite the absence of thermal noise, this system exhibits rich phase behaviours, including a fluid state with diffusive dynamics, a cluster state, a hexatic state, a glassy state, a plastic crystal state and phase demixing. We reveal that these behaviours are induced by the off-axis and many-body nature of nonlinear hydrodynamic interactions and the finite time required for propagating the interactions by momentum diffusion.

Controlling inertial focussing using rotational motion

In inertial microfluidics lift forces cause a particle to migrate across streamlines to specific positions in the cross section of a microchannel. We control the rotational motion of a particle and demonstrate that this allows to manipulate the lift-force profile and thereby the particle's equilibrium positions. We perform two-dimensional simulation studies using the method of multi-particle collision dynamics. Particles with unconstrained rotational motion occupy stable equilibrium positions in both halfs of the channel while the center is unstable. When an external torque is applied to the particle, two equilibrium positions annihilate by passing a saddle-node bifurcation and only one stable fixpoint remains so that all particles move to one side of the channel. In contrast, non-rotating particles accumulate in the center and are pushed into one half of the channel when the angular velocity is fixed to a non-zero value.

Dynamics of solutes with hydrodynamic interactions: comparison between Brownian dynamics and stochastic rotation dynamics simulations

The dynamics of particles in solution or suspension is influenced by thermal fluctuations and hydrodynamic interactions. Several mesoscale methods exist to account for these solvent-induced effects such as Brownian dynamics with hydrodynamic interactions and hybrid molecular dynamics-stochastic rotation dynamics methods. Here we compare two ways of coupling solutes to the solvent with stochastic rotation dynamics (SRD) to Brownian dynamics with and without explicit hydrodynamic interactions. In the first SRD scheme [SRD with collisional coupling (CC)] the solutes participate in the collisional step with the solvent and in the second scheme [SRD with central force coupling (CFC)] the solutes interact through direct forces with the solvent, generating slip boundary conditions. We compare the transport coefficients of neutral and charged solutes in a model system obtained by these simulation schemes. Brownian dynamics without hydrodynamic interactions is used as a reference to quantify the influence of hydrodynamics on the transport coefficients as modeled by the different methods. We show that, in the dilute range, the SRD CFC method provides results similar to those of Brownian dynamics with hydrodynamic interactions for the diffusion coefficients and for the electrical conductivity. The SRD CC scheme predicts diffusion coefficients close to those obtained by Brownian dynamic simulations without hydrodynamic interactions, but accounts for part of the influence of hydrodynamics on the electrical conductivity.

Dynamics of cluster formation in driven magnetic colloids dispersed on a monolayer

We report computer simulation results on the cluster formation of dipolar colloidal particles driven by a rotating external field in a quasi-two-dimensional setup. We focus on the interplay between permanent dipolar and hydrodynamic interactions and its influence on the dynamic behavior of the particles. This includes their individual as well as their collective motion. To investigate these characteristics, we employ Brownian dynamics simulations of a finite system with and without hydrodynamic interactions. Our results indicate that hydrodynamic interactions have a profound impact on the dynamic behavior of the clusters and the dynamics of the clustering process.

Force and torque on a cylinder rotating in a narrow gap at low Reynolds number: Scaling and lubrication analyses

The hydrodynamic forces and torques on a rotating cylinder in a narrow channel are investigated in this paper using lubrication analysis and scaling analysis. To explore the effect of the shape of the gap, three different geometries are considered. The force and torque expressions from lubrication analysis agree well with numerical solutions when the gap between cylinder and wall is small. The solutions from scaling analysis can be applied over a broader range, but only if the scaling coefficients are properly deduced from numerical solution or lubrication analysis. Self-similarity in the solutions is discussed as well.

Steady-state hydrodynamics of a viscous incompressible fluid with spinning particles

The steady-state hydrodynamics of a viscous incompressible fluid with spinning particles is studied on the basis of extended Stokes equations. The profiles of flow velocity and spin velocity in simple flow situations may be used to determine the vortex viscosity and spin viscosity of the molecular liquid or fluid suspension. As an example, one situation studied is the flow generated by a uniform torque density in a planar layer of infinite fluid. The spinning particles drive a nearly uniform flow on either side of the layer, in opposite directions on the two sides. The Green function of the extended Stokes equations is derived. The translational and rotational friction coefficients of a sphere with no-slip boundary conditions, and the corresponding flow profiles, are calculated.