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Curto C, Morrison K. Relating network connectivity to dynamics: opportunities and challenges for theoretical neuroscience. Curr Opin Neurobiol 2019; 58:11-20. [PMID: 31319287 DOI: 10.1016/j.conb.2019.06.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Accepted: 06/22/2019] [Indexed: 11/29/2022]
Abstract
We review recent work relating network connectivity to the dynamics of neural activity. While concepts stemming from network science provide a valuable starting point, the interpretation of graph-theoretic structures and measures can be highly dependent on the dynamics associated to the network. Properties that are quite meaningful for linear dynamics, such as random walk and network flow models, may be of limited relevance in the neuroscience setting. Theoretical and computational neuroscience are playing a vital role in understanding the relationship between network connectivity and the nonlinear dynamics associated to neural networks.
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Affiliation(s)
- Carina Curto
- The Pennsylvania State University, PA 16802, United States.
| | - Katherine Morrison
- School of Mathematical Sciences, University of Northern Colorado, Greeley, CO 80639, USA
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2
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Verma UK, Sharma A, Kamal NK, Kurths J, Shrimali MD. Explosive death induced by mean-field diffusion in identical oscillators. Sci Rep 2017; 7:7936. [PMID: 28801562 PMCID: PMC5554249 DOI: 10.1038/s41598-017-07926-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Accepted: 06/22/2017] [Indexed: 11/10/2022] Open
Abstract
We report the occurrence of an explosive death transition for the first time in an ensemble of identical limit cycle and chaotic oscillators coupled via mean–field diffusion. In both systems, the variation of the normalized amplitude with the coupling strength exhibits an abrupt and irreversible transition to death state from an oscillatory state and this first order phase transition to death state is independent of the size of the system. This transition is quite general and has been found in all the coupled systems where in–phase oscillations co–exist with a coupling dependent homogeneous steady state. The backward transition point for this phase transition has been calculated using linear stability analysis which is in complete agreement with the numerics.
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Affiliation(s)
- Umesh Kumar Verma
- Department of Physics, Central University of Rajasthan, Ajmer, 305 817, India
| | - Amit Sharma
- Department of Physics, Central University of Rajasthan, Ajmer, 305 817, India.,The Institute of Mathematical Science, CIT Campus, Taramani, Chennai, 600 113, India
| | - Neeraj Kumar Kamal
- Department of Physics, Central University of Rajasthan, Ajmer, 305 817, India
| | - Jürgen Kurths
- Potsdam Institute for Climate Impact Research - Telegraphenberg A 31, 14473, Potsdam, Germany.,Department of Physics, Humboldt University - Berlin, 12489, Berlin, Germany
| | - Manish Dev Shrimali
- Department of Physics, Central University of Rajasthan, Ajmer, 305 817, India.
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Gal E, London M, Globerson A, Ramaswamy S, Reimann MW, Muller E, Markram H, Segev I. Rich cell-type-specific network topology in neocortical microcircuitry. Nat Neurosci 2017; 20:1004-1013. [DOI: 10.1038/nn.4576] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Accepted: 05/03/2017] [Indexed: 12/14/2022]
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Xu K, Zhang X, Wang C, Liu Z. A simplified memory network model based on pattern formations. Sci Rep 2014; 4:7568. [PMID: 25524172 PMCID: PMC4271251 DOI: 10.1038/srep07568] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2014] [Accepted: 12/01/2014] [Indexed: 11/09/2022] Open
Abstract
Many experiments have evidenced the transition with different time scales from short-term memory (STM) to long-term memory (LTM) in mammalian brains, while its theoretical understanding is still under debate. To understand its underlying mechanism, it has recently been shown that it is possible to have a long-period rhythmic synchronous firing in a scale-free network, provided the existence of both the high-degree hubs and the loops formed by low-degree nodes. We here present a simplified memory network model to show that the self-sustained synchronous firing can be observed even without these two necessary conditions. This simplified network consists of two loops of coupled excitable neurons with different synaptic conductance and with one node being the sensory neuron to receive an external stimulus signal. This model can be further used to show how the diversity of firing patterns can be selectively formed by varying the signal frequency, duration of the stimulus and network topology, which corresponds to the patterns of STM and LTM with different time scales. A theoretical analysis is presented to explain the underlying mechanism of firing patterns.
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Affiliation(s)
- Kesheng Xu
- Department of Physics, East China Normal University, Shanghai, 200062, China
| | - Xiyun Zhang
- Department of Physics, East China Normal University, Shanghai, 200062, China
| | - Chaoqing Wang
- Department of Physics, East China Normal University, Shanghai, 200062, China
| | - Zonghua Liu
- Department of Physics, East China Normal University, Shanghai, 200062, China
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Maslennikov OV, Nekorkin VI. Modular networks with delayed coupling: synchronization and frequency control. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:012901. [PMID: 25122354 DOI: 10.1103/physreve.90.012901] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Indexed: 06/03/2023]
Abstract
We study the collective dynamics of modular networks consisting of map-based neurons which generate irregular spike sequences. Three types of intramodule topology are considered: a random Erdös-Rényi network, a small-world Watts-Strogatz network, and a scale-free Barabási-Albert network. The interaction between the neurons of different modules is organized by relatively sparse connections with time delay. For all the types of the network topology considered, we found that with increasing delay two regimes of module synchronization alternate with each other: inphase and antiphase. At the same time, the average rate of collective oscillations decreases within each of the time-delay intervals corresponding to a particular synchronization regime. A dual role of the time delay is thus established: controlling a synchronization mode and degree and controlling an average network frequency. Furthermore, we investigate the influence on the modular synchronization by other parameters: the strength of intermodule coupling and the individual firing rate.
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Affiliation(s)
- Oleg V Maslennikov
- Institute of Applied Physics of RAS, Nizhny Novgorod, Russia and N. I. Lobachevsky State University of Nizhny Nodgorod, Nizhny Novgorod, Russia
| | - Vladimir I Nekorkin
- Institute of Applied Physics of RAS, Nizhny Novgorod, Russia and N. I. Lobachevsky State University of Nizhny Nodgorod, Nizhny Novgorod, Russia
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Goldental A, Guberman S, Vardi R, Kanter I. A computational paradigm for dynamic logic-gates in neuronal activity. Front Comput Neurosci 2014; 8:52. [PMID: 24808856 PMCID: PMC4010740 DOI: 10.3389/fncom.2014.00052] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Accepted: 04/07/2014] [Indexed: 01/12/2023] Open
Abstract
In 1943 McCulloch and Pitts suggested that the brain is composed of reliable logic-gates similar to the logic at the core of today's computers. This framework had a limited impact on neuroscience, since neurons exhibit far richer dynamics. Here we propose a new experimentally corroborated paradigm in which the truth tables of the brain's logic-gates are time dependent, i.e., dynamic logic-gates (DLGs). The truth tables of the DLGs depend on the history of their activity and the stimulation frequencies of their input neurons. Our experimental results are based on a procedure where conditioned stimulations were enforced on circuits of neurons embedded within a large-scale network of cortical cells in-vitro. We demonstrate that the underlying biological mechanism is the unavoidable increase of neuronal response latencies to ongoing stimulations, which imposes a non-uniform gradual stretching of network delays. The limited experimental results are confirmed and extended by simulations and theoretical arguments based on identical neurons with a fixed increase of the neuronal response latency per evoked spike. We anticipate our results to lead to better understanding of the suitability of this computational paradigm to account for the brain's functionalities and will require the development of new systematic mathematical methods beyond the methods developed for traditional Boolean algebra.
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Affiliation(s)
- Amir Goldental
- Department of Physics, Bar-Ilan UniversityRamat-Gan, Israel
| | - Shoshana Guberman
- Department of Physics, Bar-Ilan UniversityRamat-Gan, Israel
- The Goodman Faculty of Life Sciences, Gonda Interdisciplinary Brain Research Center, Bar-Ilan UniversityRamat-Gan, Israel
| | - Roni Vardi
- The Goodman Faculty of Life Sciences, Gonda Interdisciplinary Brain Research Center, Bar-Ilan UniversityRamat-Gan, Israel
| | - Ido Kanter
- Department of Physics, Bar-Ilan UniversityRamat-Gan, Israel
- The Goodman Faculty of Life Sciences, Gonda Interdisciplinary Brain Research Center, Bar-Ilan UniversityRamat-Gan, Israel
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7
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Thivierge JP, Comas R, Longtin A. Attractor dynamics in local neuronal networks. Front Neural Circuits 2014; 8:22. [PMID: 24688457 PMCID: PMC3960591 DOI: 10.3389/fncir.2014.00022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2013] [Accepted: 03/02/2014] [Indexed: 12/01/2022] Open
Abstract
Patterns of synaptic connectivity in various regions of the brain are characterized by the presence of synaptic motifs, defined as unidirectional and bidirectional synaptic contacts that follow a particular configuration and link together small groups of neurons. Recent computational work proposes that a relay network (two populations communicating via a third, relay population of neurons) can generate precise patterns of neural synchronization. Here, we employ two distinct models of neuronal dynamics and show that simulated neural circuits designed in this way are caught in a global attractor of activity that prevents neurons from modulating their response on the basis of incoming stimuli. To circumvent the emergence of a fixed global attractor, we propose a mechanism of selective gain inhibition that promotes flexible responses to external stimuli. We suggest that local neuronal circuits may employ this mechanism to generate precise patterns of neural synchronization whose transient nature delimits the occurrence of a brief stimulus.
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Affiliation(s)
| | - Rosa Comas
- School of Psychology, University of Ottawa ON, Canada
| | - André Longtin
- Department of Physics, University of Ottawa ON, Canada
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Rosin DP, Rontani D, Gauthier DJ, Schöll E. Experiments on autonomous Boolean networks. CHAOS (WOODBURY, N.Y.) 2013; 23:025102. [PMID: 23822500 DOI: 10.1063/1.4807481] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
We realize autonomous Boolean networks by using logic gates in their autonomous mode of operation on a field-programmable gate array. This allows us to implement time-continuous systems with complex dynamical behaviors that can be conveniently interconnected into large-scale networks with flexible topologies that consist of time-delay links and a large number of nodes. We demonstrate how we realize networks with periodic, chaotic, and excitable dynamics and study their properties. Field-programmable gate arrays define a new experimental paradigm that holds great potential to test a large body of theoretical results on the dynamics of complex networks, which has been beyond reach of traditional experimental approaches.
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Affiliation(s)
- David P Rosin
- Duke University, Department of Physics, Science Drive, Durham, North Carolina 27708, USA
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Rosin DP, Rontani D, Gauthier DJ, Schöll E. Control of synchronization patterns in neural-like Boolean networks. PHYSICAL REVIEW LETTERS 2013; 110:104102. [PMID: 23521258 DOI: 10.1103/physrevlett.110.104102] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Indexed: 06/01/2023]
Abstract
We study experimentally the synchronization patterns in time-delayed directed Boolean networks of excitable systems. We observe a transition in the network dynamics when the refractory time of the individual systems is adjusted. When the refractory time is on the same order of magnitude as the mean link time delays or the heterogeneities of the link time delays, cluster synchronization patterns change, or are suppressed entirely, respectively. We also show that these transitions occur when we change the properties of only a small number of driver nodes identified by their larger in degree; hence, the synchronization patterns can be controlled locally by these nodes. Our findings have implications for synchronization in biological neural networks.
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Affiliation(s)
- David P Rosin
- Department of Physics, Duke University, Durham, North Carolina 27708, USA.
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