Globally aligned states and hydrodynamic traffic jams in confined suspensions of active asymmetric particles

Geometrical impacts of platonic particles on nematic liquid crystal dynamics

Platonic-solid-like particles in liquid crystals offer intriguing opportunities for engineering complex materials with tailored properties. Inspired by platonic solids' geometric simplicity and symmetry, these particles possess well-defined shapes such as cubes, tetrahedra, octahedra, dodecahedra, and icosahedra. When dispersed within nematic liquid-crystalline media, these particles interact with the surrounding medium in intricate ways, influencing the local orientational order of liquid crystal molecules. In this work, we implement continuum simulations to study how the combination of particle shape and surface anchoring gives rise to line defects that follow the edges of the particles and how they are affected by the presence of a Poiseuille flow. Platonic-solid-like particles in liquid crystals have shown promise in diverse applications ranging from photonics and metamaterials to colloidal self-assembly and responsive soft materials.

Bacterial active matter

Bacteria are among the oldest and most abundant species on Earth. Bacteria successfully colonize diverse habitats and play a significant role in the oxygen, carbon, and nitrogen cycles. They also form human and animal microbiota and may become sources of pathogens and a cause of many infectious diseases. Suspensions of motile bacteria constitute one of the most studied examples of active matter: a broad class of non-equilibrium systems converting energy from the environment (e.g., chemical energy of the nutrient) into mechanical motion. Concentrated bacterial suspensions, often termed active fluids, exhibit complex collective behavior, such as large-scale turbulent-like motion (so-called bacterial turbulence) and swarming. The activity of bacteria also affects the effective viscosity and diffusivity of the suspension. This work reports on the progress in bacterial active matter from the physics viewpoint. It covers the key experimental results, provides a critical assessment of major theoretical approaches, and addresses the effects of visco-elasticity, liquid crystallinity, and external confinement on collective behavior in bacterial suspensions.

The many behaviors of deformable active droplets

Active fluids consume fuel at the microscopic scale, converting this energy into forces that can drive macroscopic motions over scales far larger than their microscopic constituents. In some cases, the mechanisms that give rise to this phenomenon have been well characterized, and can explain experimentally observed behaviors in both bulk fluids and those confined in simple stationary geometries. More recently, active fluids have been encapsulated in viscous drops or elastic shells so as to interact with an outer environment or a deformable boundary. Such systems are not as well understood. In this work, we examine the behavior of droplets of an active nematic fluid. We study their linear stability about the isotropic equilibrium over a wide range of parameters, identifying regions in which different modes of instability dominate. Simulations of their full dynamics are used to identify their nonlinear behavior within each region. When a single mode dominates, the droplets behave simply: as rotors, swimmers, or extensors. When parameters are tuned so that multiple modes have nearly the same growth rate, a pantheon of modes appears, including zigzaggers, washing machines, wanderers, and pulsators.

Long-range nematic order and anomalous fluctuations in suspensions of swimming filamentous bacteria

We study the collective dynamics of elongated swimmers in a very thin fluid layer by devising long filamentous nontumbling bacteria. The strong confinement induces weak nematic alignment upon collision, which, for large enough density of cells, gives rise to global nematic order. This homogeneous but fluctuating phase, observed on the largest experimentally accessible scale of millimeters, exhibits the properties predicted by standard models for flocking, such as the Vicsek-style model of polar particles with nematic alignment: true long-range nematic order and nontrivial giant number fluctuations.

Geometric control of active collective motion

Recent experimental studies have shown that confinement can profoundly affect self-organization in semi-dilute active suspensions, leading to striking features such as the formation of steady and spontaneous vortices in circular domains and the emergence of unidirectional pumping motions in periodic racetrack geometries. Motivated by these findings, we analyze the two-dimensional dynamics in confined suspensions of active self-propelled swimmers using a mean-field kinetic theory where conservation equations for the particle configurations are coupled to the forced Navier-Stokes equations for the self-generated fluid flow. In circular domains, a systematic exploration of the parameter space casts light on three distinct states: equilibrium with no flow, stable vortex, and chaotic motion, and the transitions between these are explained and predicted quantitatively using a linearized theory. In periodic racetracks, similar transitions from equilibrium to net pumping to traveling waves to chaos are observed in agreement with experimental observations and are also explained theoretically. Our results underscore the subtle effects of geometry on the morphology and dynamics of emerging patterns in active suspensions and pave the way for the control of active collective motion in microfluidic devices.

Two-dimensional flow of driven particles: a microfluidic pathway to the non-equilibrium frontier

We discuss the basic physics of the flow of micron-scale droplets in 2D geometry.

Purely hydrodynamic origin for swarming of swimming particles

Three-dimensional simulations with fully resolved hydrodynamics are performed to study the collective motion of model swimmers in bulk and confinement. Calculating the dynamic structure factor, we clarified that the swarming in bulk systems can be understood as a pseudoacoustic mode. Under confinement between flat parallel walls, this pseudoacoustic mode leads to a traveling wavelike motion. This swarming behavior is due purely to the hydrodynamic interactions between the swimmers and depends strongly on the type and strength of swimming (i.e., pusher or puller).

Density Shock Waves in Confined Microswimmers

Motile and driven particles confined in microfluidic channels exhibit interesting emergent behavior, from propagating density bands to density shock waves. A deeper understanding of the physical mechanisms responsible for these emergent structures is relevant to a number of physical and biomedical applications. Here, we study the formation of density shock waves in the context of an idealized model of microswimmers confined in a narrow channel and subject to a uniform external flow. Interestingly, these density shock waves exhibit a transition from "subsonic" with compression at the back to "supersonic" with compression at the front of the population as the intensity of the external flow increases. This behavior is the result of a nontrivial interplay between hydrodynamic interactions and geometric confinement, and it is confirmed by a novel quasilinear wave model that properly captures the dependence of the shock formation on the external flow. These findings can be used to guide the development of novel mechanisms for controlling the emergent density distribution and the average population speed, with potentially profound implications on various processes in industry and biotechnology, such as the transport and sorting of cells in flow channels.

Emergent Hyperuniformity in Periodically Driven Emulsions

We report the self-organization of microfluidic emulsions into anomalously homogeneous structures. Upon periodic driving confined emulsions undergo a first-order transition from a reversible to an irreversible dynamics. We evidence that this dynamical transition is accompanied by structural changes at all scales yielding macroscopic yet finite hyperuniform structures. Numerical simulations are performed to single out the very ingredients responsible for the suppression of density fluctuations. We show that, as opposed to equilibrium systems, the long-range nature of the hydrodynamic interactions are not required for the formation of hyperuniform patterns, thereby suggesting a robust relation between reversibility and hyperuniformity which should hold in a broad class of periodically driven materials.

The swim force as a body force

Net (as opposed to random) motion of active matter results from an average swim (or propulsive) force. It is shown that the average swim force acts like a body force - an internal body force. As a result, the particle-pressure exerted on a container wall is the sum of the swim pressure [Takatori et al., Phys. Rev. Lett., 2014, 113, 028103] and the 'weight' of the active particles. A continuum description is possible when variations occur on scales larger than the run length of the active particles and gives a Boltzmann-like distribution from a balance of the swim force and the swim pressure. Active particles may also display 'action at a distance' and accumulate adjacent to (or be depleted from) a boundary without any external forces. In the momentum balance for the suspension - the mixture of active particles plus fluid - only external body forces appear.

Circularly confined microswimmers exhibit multiple global patterns

Geometric confinement plays an important role in the dynamics of natural and synthetic microswimmers from bacterial cells to self-propelled particles in high-throughput microfluidic devices. However, little is known about the effects of geometric confinement on the emergent global patterns in such self-propelled systems. Recent experiments on bacterial cells report that, depending on the cell concentration, cells either spontaneously organize into vortical motion in thin cylindrical and spherical droplets or aggregate at the inner boundary of the droplets. Our goal in this paper is to investigate, in the context of an idealized physical model, the interplay between geometric confinement and level of flagellar activity on the emergent collective patterns. We show that decreasing flagellar activity induces a hydrodynamically triggered transition in confined microswimmers from swirling to global circulation (vortex) to boundary aggregation and clustering. These results highlight that the complex interplay between confinement, flagellar activity, and hydrodynamic flows in concentrated suspensions of microswimmers could lead to a plethora of global patterns that are difficult to predict from geometric consideration alone.

Motility versus fluctuations in mixtures of self-motile and passive agents

Many biological systems consist of self-motile and passive agents both of which contribute to overall functionality. However, little is known about the properties of such mixtures. Here we formulate a model for mixtures of self-motile and passive agents and show that the model gives rise to three different dynamical phases: a disordered mesoturbulent phase, a polar flocking phase, and a vortical phase characterized by large-scale counter rotating vortices. We use numerical simulations to construct a phase diagram and compare the statistical properties of the different phases with observed features of self-motile bacterial suspensions. Our findings afford specific insights regarding the interaction of microorganisms and passive particles and provide novel strategic guidance for efficient technological realizations of artificial active matter.

Flagella-induced transitions in the collective behavior of confined microswimmers

Bacteria are usually studied in free-swimming planktonic state or in sessile biofilm state. However, little is known about intermediate states where variability in the environmental conditions and/or energy supply to the flagellar propulsive system alter flagellar activity. In this Rapid Communication, we propose an idealized physical model to investigate the effects of flagellar activity on the hydrodynamic interactions among a population of microswimmers. We show that decreasing flagellar activity induces a hydrodynamically triggered transition in confined microswimmers from turbulentlike swimming to aggregation and clustering. These results suggest that the interplay between flagellar activity and hydrodynamic interactions provides a physical mechanism for coordinating collective behaviors in confined bacteria, with potentially profound implications on processes such as molecular diffusion and transport of oxygen and nutrients that mediate transitions in the bacteria physiological state.

Tailoring the interactions between self-propelled bodies

We classify the interactions between self-propelled particles moving at a constant speed from symmetry considerations. We establish a systematic expansion for the two-body forces in the spirit of a multipolar expansion. This formulation makes it possible to rationalize most of the models introduced so far within a common framework. We distinguish between three classes of physical interactions: i) potential forces, ii) inelastic collisions and iii) non-reciprocal interactions involving polar or nematic alignment with an induced field. This framework provides simple design rules for the modeling and the fabrication of self-propelled bodies interacting via physical interactions. A class of possible interactions that should yield new phases of active matter is highlighted.