Role of driving force on the clogging of inert particles in a bottleneck

Role of DNA-DNA sliding friction and nonequilibrium dynamics in viral genome ejection and packaging

Many viruses eject their DNA via a nanochannel in the viral shell, driven by internal forces arising from the high-density genome packing. The speed of DNA exit is controlled by friction forces that limit the molecular mobility, but the nature of this friction is unknown. We introduce a method to probe the mobility of the tightly confined DNA by measuring DNA exit from phage phi29 capsids with optical tweezers. We measure extremely low initial exit velocity, a regime of exponentially increasing velocity, stochastic pausing that dominates the kinetics and large dynamic heterogeneity. Measurements with variable applied force provide evidence that the initial velocity is controlled by DNA-DNA sliding friction, consistent with a Frenkel-Kontorova model for nanoscale friction. We confirm several aspects of the ejection dynamics predicted by theoretical models. Features of the pausing suggest that it is connected to the phenomenon of 'clogging' in soft matter systems. Our results provide evidence that DNA-DNA friction and clogging control the DNA exit dynamics, but that this friction does not significantly affect DNA packaging.

Role of DNA-DNA sliding friction and non-equilibrium dynamics in viral genome ejection and packaging

Many viruses eject their DNA via a nanochannel in the viral shell, driven by internal forces arising from the high-density genome packing. The speed of DNA exit is controlled by friction forces that limit the molecular mobility, but the nature of this friction is unknown. We introduce a method to probe the mobility of the tightly confined DNA by measuring DNA exit from phage phi29 capsids with optical tweezers. We measure extremely low initial exit velocity, a regime of exponentially increasing velocity, stochastic pausing that dominates the kinetics, and large dynamic heterogeneity. Measurements with variable applied force provide evidence that the initial velocity is controlled by DNA-DNA sliding friction, consistent with a Frenkel-Kontorova model for nanoscale friction. We confirm several aspects of the ejection dynamics predicted by theoretical models. Features of the pausing suggest it is connected to the phenomenon of "clogging" in soft-matter systems. Our results provide evidence that DNA-DNA friction and clogging control the DNA exit dynamics, but that this friction does not significantly affect DNA packaging.

Study of Clogging Phenomenon for a Conical Hopper: The Influence of Particle Bed Height and Hopper Angle

The granular flow is one of the principal issues for the design of pebble bed reactors. Particularly, the clogging phenomenon raises an important issue for pebble bed reactors. In this paper, we conduct experiments and discrete particle simulation of two-dimensional discharge granular flow from a conical hopper, to study the effect of the particle bed height $h$ and hopper angle $\alpha$ on the clogging phenomenon. In general, the clogging probability $J$ increases with height $h$ and starts to saturate when $h$ is larger than a critical value. The experimental result trends are supported by discrete simulations. To understand the underlying physical mechanism, we conduct discrete particle simulations for various $h$ values, focusing on the following parameters: the statistical averaging of the volume fraction, velocity, and contact pressure of particles near the aperture during the discharge. We found that, among all relevant variables, the contact pressure of particles is the main cause of the increasement of J when $h$ increases. An exponential law between the pebble bed $h$ and clogging probability J has been established based on these observations and Janssen model. As for hopper angle $\alpha$ , J shows an almost constant behavior for any rise in $\alpha$ followed by a sudden regression at $\alpha ={75}^{°}$ . Surprisingly, the effect of $\alpha$ is most obvious for intermediate values of $h$ , where we observe a sharp increasement of clogging probability. The same trend is observed in the two-dimensional discrete simulation results.

Non-monotonic dependence of avalanche durations on particle velocities in the discharge of a silo

The distributions of avalanche times between successive clog events are analyzed in a silo discharged with a conveyor belt. In a previous work [Phys. Rev. Lett. 121, 138001 (2018)], we measured the distribution of avalanche sizes (in number of particles) for the same experiment, finding a monotonous influence of both the outlet size and the velocity of particles in the clogging probability. Nonetheless, if avalanche durations are analyzed instead of avalanche sizes, a minimum is observed when representing the mean avalanche time as function of the velocity of particles. This phenomenon is explained using kinematic arguments, which are validated by experimental data. At the same time, this work aims at highlighting the importance of discerning between measuring clogging avalanches in terms of times or doing it in terms of number of particles.

Modeling methods for gravity flow of granular solids in silos

This paper provides a review on the flow of free-flowing particles inside silos. We have previously reviewed in detail the experimental studies in this field. In the present work, the focus is placed on the theoretical approaches allowing numerical simulation and modeling of these systems. Modeling of granular flow in silos is very significant due to the advantages of modeling compared to experiments. The simulation methods are divided into four main groups: analytical methods, finite element method, discrete element method, and hybrid models. In each section, the most significant researches are reviewed. The drawbacks and advantages of each method are discussed, and the effects of different parameters are reviewed. Finally, the perspective of future work and the main challenges in this area are discussed.

Decoupling Geometrical and Kinematic Contributions to the Silo Clogging Process

Based on the implementation of a novel silo discharge procedure, we are able to control the grains velocities regardless of the outlet size. This allows isolating the geometrical and kinematic contributions to the clogging process. We find that, for a given outlet size, reducing the grains velocities to extremely low values leads to a clogging probability increment of almost two orders of magnitude, hence revealing the importance of particle kinematics in the silo clogging process. Then, we explore the contribution of both variables, outlet size and grains velocity, and we find that our results agree with an already known exponential expression that relates clogging probability with outlet size. We propose a modification of such expression revealing that only two parameters are necessary to fit all the data: one is related with the geometry of the problem, and the other with the grains kinematics.

Effect of form of obstacle on speed of crowd evacuation

This paper investigates the effect of the form of an obstacle on the time that a crowd takes to evacuate a room, using a toy model. Pedestrians are modeled as active soft matter moving toward a point with intended velocities. An obstacle is placed in front of the exit, and it has one of four shapes: a cylindrical column, a triangular prism, a quadratic prism, or a diamond prism. Numerical results indicate that the evacuation-completion time depends on the shape of the obstacle. Obstacles with a circular cylinder (C.C.) shape yield the shortest evacuation-completion time in the proposed model.

Clogging of soft particles in two-dimensional hoppers

Using experiments and simulations, we study the flow of soft particles through quasi-two-dimensional hoppers. The first experiment uses oil-in-water emulsion droplets in a thin sample chamber. Due to surfactants coating the droplets, they easily slide past each other, approximating soft frictionless disks. For these droplets, clogging at the hopper exit requires a narrow hopper opening only slightly larger than the droplet diameter. The second experiment uses soft hydrogel particles in a thin sample chamber, where we vary gravity by changing the tilt angle of the chamber. For reduced gravity, clogging becomes easier and can occur for larger hopper openings. Our simulations mimic the emulsion experiments and demonstrate that softness is a key factor controlling clogging: with stiffer particles or a weaker gravitational force, clogging is easier. The fractional amount a single particle is deformed under its own weight is a useful parameter measuring particle softness. Data from the simulation and hydrogel experiments collapse when compared using this parameter. Our results suggest that prior studies using hard particles were in a limit where the role of softness is negligible, which causes clogging to occur with significantly larger openings.

Role of particle size in the kinematic properties of silo flow

We experimentally analyze the effect that particle size has on the mass flow rate of a quasi two-dimensional silo discharged by gravity. In a previous work, Janda et al. [Phys. Rev. Lett. 108, 248001 (2012)PRLTAO0031-900710.1103/PhysRevLett.108.248001] introduced a new expression for the mass flow rate based on a detailed experimental analysis of the flow for 1-mm diameter beads. Here, we aim to extend these results by using particles of larger sizes and a variable that was not explicitly included in the proposed expression. We show that the velocity and density profiles at the outlet are self-similar and scale with the outlet size with the same functionalities as in the case of 1-mm particles. Nevertheless, some discrepancies are evidenced in the values of the fitting parameters. In particular, we observe that larger particles lead to higher velocities and lower packing fractions at the orifice. Intriguingly, both magnitudes seem to compensate giving rise to very similar flow rates. In order to shed light on the origin of this behavior we have computed fields of a solid fraction, velocity, and a kinetic-stress like variable in the region above the orifice.

Outflow and clogging of shape-anisotropic grains in hoppers with small apertures

Outflow of granular material through a small orifice is a fundamental process in many industrial fields, for example in silo discharge, and in everyday's life. Most experimental studies of the dynamics have been performed so far with monodisperse disks in two-dimensional (2D) hoppers or spherical grains in 3D. We investigate this process for shape-anisotropic grains in 3D hoppers and discuss the role of size and shape parameters on avalanche statistics, clogging states, and mean flow velocities. It is shown that an increasing aspect ratio of the grains leads to lower flow rates and higher clogging probabilities compared to spherical grains. On the other hand, the number of grains forming the clog is larger for elongated grains of comparable volumes, and the long axis of these blocking grains is preferentially aligned towards the center of the orifice. We find a qualitative transition in the hopper discharge behavior for aspect ratios larger than ≈6. At still higher aspect ratios >8-12, the outflowing material leaves long vertical holes in the hopper that penetrate the complete granular bed. This changes the discharge characteristics qualitatively.

Clogging of granular materials in silos: effect of gravity and outlet size

By means of extensive numerical simulations we disclose the role of the driving force in the clogging of inert particles passing through a constriction. We uncover the effect of gravity and outlet size on the flow rate and kinetic energy within the system, and use these quantities to deepen our understanding of the blocking process. First, we confirm the existence of a finite avalanche size when the driving force tends to zero. The magnitude of this limit avalanche size grows with the outlet size, as expected due to geometrical reasons. In addition, there is an augment of the avalanche size when the driving force is increased, an effect that is enhanced by the outlet size. This phenomenology is explained by assuming that in order to get a stable clog developed, two conditions must be fulfilled: (1) an arch spanning the outlet size should be formed; (2) the arch should resist until the complete dissipation of the kinetic energy within the system. From these assumptions, we are able to obtain the probability that an arch gets destabilized, which is shown to primarily depend on the square root of the kinetic energy. A minor additional dependence of the outlet size is also observed which is explained in the light of recent results of the arch resistance in vibrated silos.

Experimental proof of faster-is-slower in systems of frictional particles flowing through constrictions

The "faster-is-slower" (FIS) effect was first predicted by computer simulations of the egress of pedestrians through a narrow exit [D. Helbing, I. J. Farkas, and T. Vicsek, Nature (London) 407, 487 (2000)]. FIS refers to the finding that, under certain conditions, an excess of the individuals' vigor in the attempt to exit causes a decrease in the flow rate. In general, this effect is identified by the appearance of a minimum when plotting the total evacuation time of a crowd as a function of the pedestrian desired velocity. Here, we experimentally show that the FIS effect indeed occurs in three different systems of discrete particles flowing through a constriction: (a) humans evacuating a room, (b) a herd of sheep entering a barn, and (c) grains flowing out a 2D hopper over a vibrated incline. This finding suggests that FIS is a universal phenomenon for active matter passing through a narrowing.

Commentary on "Jamming transition in a two-dimensional open granular pile with rolling resistance"

A Commentary on the paper by C F M Magalhes et. al. [Pap. Phys. 6, 060007 (2014)]. Received: 10 October 2014, Accepted: 10 October 2014; Edited by: L. A. Pugnaloni; DOI: http://dx.doi.org/10.4279/PIP.060008Cite as: R. Arévalo, Papers in Physics 6, 060008 (2014)