Macroscopic response to microscopic intrinsic noise in three-dimensional Fisher fronts

Clonal dynamics of surface-driven growing tissues

The self-organization of cells into complex tissues relies on a tight coordination of cell behavior. Identifying the cellular processes driving tissue growth is key to understanding the emergence of tissue forms and devising targeted therapies for aberrant growth, such as in cancer. Inferring the mode of tissue growth, whether it is driven by cells on the surface or by cells in the bulk, is possible in cell culture experiments but difficult in most tissues in living organisms (in vivo). Genetic tracing experiments, where a subset of cells is labeled with inheritable markers, have become important experimental tools to study cell fate in vivo. Here we show that the mode of tissue growth is reflected in the size distribution of the progeny of marked cells. To this end, we derive the clone size distributions using analytical calculations in the limit of negligible cell migration and cell death, and we test our predictions with an agent-based stochastic sampling technique. We show that for surface-driven growth the clone size distribution takes a characteristic power-law form with an exponent determined by fluctuations of the tissue surface. Our results propose a possible way of determining the mode of tissue growth from genetic tracing experiments.

Universal interface fluctuations in the contact process

We study the interface representation of the contact process at its directed-percolation critical point, where the scaling properties of the interface can be related to those of the original particle model. Interestingly, such a behavior happens to be intrinsically anomalous and more complex than that described by the standard Family-Vicsek dynamic scaling Ansatz of surface kinetic roughening. We expand on a previous numerical study by Dickman and Muñoz [Phys. Rev. E 62, 7632 (2000)10.1103/PhysRevE.62.7632] to fully characterize the kinetic roughening universality class for interface dimensions d=1,2, and 3. Beyond obtaining scaling exponent values, we characterize the interface fluctuations via their probability density function (PDF) and covariance, seen to display universal properties which are qualitatively similar to those recently assessed for the Kardar-Parisi-Zhang (KPZ) and other important universality classes of kinetic roughening. Quantitatively, while for d=1 the interface covariance seems to be well described by the KPZ, Airy_{1} covariance, no such agreement occurs in terms of the fluctuation PDF or the scaling exponents.

Anomalous ballistic scaling in the tensionless or inviscid Kardar-Parisi-Zhang equation

The one-dimensional Kardar-Parisi-Zhang (KPZ) equation is becoming an overarching paradigm for the scaling of nonequilibrium, spatially extended, classical and quantum systems with strong correlations. Recent analytical solutions have uncovered a rich structure regarding its scaling exponents and fluctuation statistics. However, the zero surface tension or zero viscosity case eludes such analytical solutions and has remained ill-understood. Using numerical simulations, we elucidate a well-defined universality class for this case that differs from that of the viscous case, featuring intrinsically anomalous kinetic roughening (despite previous expectations for systems with local interactions and time-dependent noise) and ballistic dynamics. The latter may be relevant to recent quantum spin chain experiments which measure KPZ and ballistic relaxation under different conditions. We identify the ensuing set of scaling exponents in previous discrete interface growth models related with isotropic percolation, and show it to describe the fluctuations of additional continuum systems related with the noisy Korteweg-de Vries equation. Along this process, we additionally elucidate the universality class of the related inviscid stochastic Burgers equation.

Invasion front dynamics in disordered environments

Invasion occurs in environments that are normally spatially disordered, however, the effect of such a randomness on the dynamics of the invasion front has remained less understood. Here, we study Fisher's equation in disordered environments both analytically and numerically. Using the Effective Medium Approximation, we show that disorder slows down invasion velocity and for ensemble average of invasion velocity in disordered environment we have [Formula: see text] where [Formula: see text] is the amplitude of disorder and [Formula: see text] is the invasion velocity in the corresponding homogeneous environment given by [Formula: see text]. Additionally, disorder imposes fluctuations on the invasion front. Using a perturbative approach, we show that these fluctuations are Brownian with a diffusion constant of: [Formula: see text]. These findings were approved by numerical analysis. Alongside this continuum model, we use the Stepping Stone Model to check how our findings change when we move from the continuum approach to a discrete approach. Our analysis suggests that individual-based models exhibit inherent fluctuations and the effect of environmental disorder becomes apparent for large disorder intensity and/or high carrying capacities.

Non-KPZ fluctuations in the derivative of the Kardar-Parisi-Zhang equation or noisy Burgers equation

The Kardar-Parisi-Zhang (KPZ) equation is a paradigmatic model of nonequilibrium low-dimensional systems with spatiotemporal scale invariance, recently highlighting universal behavior in fluctuation statistics. Its space derivative, namely the noisy Burgers equation, has played a very important role in its study, predating the formulation of the KPZ equation proper, and being frequently held as an equivalent system. We show that, while differences in the scaling exponents for the two equations are indeed due to a mere space derivative, the field statistics behave in a remarkably different way: while the KPZ equation follows the Tracy-Widom distribution, its derivative displays Gaussian behavior, hence being in a different universality class. We reach this conclusion via direct numerical simulations of the equations, supported by a dynamic renormalization group study of field statistics.

Nonuniversality of front fluctuations for compact colonies of nonmotile bacteria

The front of a compact bacterial colony growing on a Petri dish is a paradigmatic instance of non-equilibrium fluctuations in the celebrated Eden, or Kardar-Parisi-Zhang (KPZ), universality class. While in many experiments the scaling exponents crucially differ from the expected KPZ values, the source of this disagreement has remained poorly understood. We have performed growth experiments with B. subtilis 168 and E. coli ATCC 25922 under conditions leading to compact colonies in the classically alleged Eden regime, where individual motility is suppressed. Non-KPZ scaling is indeed observed for all accessible times, KPZ asymptotics being ruled out for our experiments due to the monotonic increase of front branching with time. Simulations of an effective model suggest the occurrence of transient nonuniversal scaling due to diffusive morphological instabilities, agreeing with expectations from detailed models of the relevant biological reaction-diffusion processes.

Morphological stabilization and KPZ scaling by electrochemically induced co-deposition of nanostructured NiW alloy films

We have assessed the stabilizing role that induced co-deposition has in the growth of nanostructured NiW alloy films by electrodeposition on polished steel substrates, under pulsed galvanostatic conditions. We have compared the kinetic roughening properties of NiW films with those of Ni films deposited under the same conditions, as assessed by Atomic Force Microscopy. The surface morphologies of both systems are super-rough at short times, but differ at long times: while a cauliflower-like structure dominates for Ni, the surfaces of NiW films display a nodular morphology consistent with more stable, conformal growth, whose height fluctuations are in the Kardar-Parisi-Zhang universality class of rough two-dimensional interfaces. These differences are explained by the mechanisms controlling surface growth in each case: mass transport through the electrolyte (Ni) and attachment of the incoming species to the growing interface (NiW). Thus, the long-time conformal growth regime is characteristic of electrochemical induced co-deposition under current conditions in which surface kinetics is hindered due to a complex reaction mechanism. These results agree with a theoretical model of surface growth in diffusion-limited systems, in which the key parameter is the relative importance of mass transport with respect to the kinetics of the attachment reaction.

Spreading of nonmotile bacteria on a hard agar plate: Comparison between agent-based and stochastic simulations

We study spreading of a nonmotile bacteria colony on a hard agar plate by using agent-based and continuum models. We show that the spreading dynamics depends on the initial nutrient concentration, the motility, and the inherent demographic noise. Population fluctuations are inherent in an agent-based model, whereas for the continuum model we model them by using a stochastic Langevin equation. We show that the intrinsic population fluctuations coupled with nonlinear diffusivity lead to a transition from a diffusion limited aggregation type of morphology to an Eden-like morphology on decreasing the initial nutrient concentration.