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Sonntag LS, Schweizer S, Ochsenfeld C, Wennemers H. The "azido gauche effect"-implications for the conformation of azidoprolines. J Am Chem Soc 2007; 128:14697-703. [PMID: 17090057 DOI: 10.1021/ja0654938] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The "azido gauche effect" was examined both experimentally and theoretically and was found to determine the conformation of, for example, (4R)- and (4S)-azidoproline (Azp) derivatives. For (4R)Azp derivatives, the azido gauche effect induces a preferred C(4)-exo conformation of the pyrrolidine ring, which leads to stabilization of the s-trans amide conformer of, e.g., Ac-(4R)Azp-OCH(3) (5R) via an n-->pi interaction between the nonbonding electrons of the oxygen of the acetyl group and the carbonyl group of the ester. For (4S)Azp derivatives, the azido gauche effect results in a C(4)-endo conformation of the pyrrolidine ring that does not allow for this stabilizing n-->pi interaction of the s-trans conformer. Consequently, a significantly higher s-trans:s-cis amide conformer ratio is observed for (4R)Azp compared to (4S)Azp derivatives (e.g., 6.1:1 versus 2.6:1 in D(2)O for Ac-(4R)Azp-OCH(3) (5R) compared to Ac-(4S)Azp-OCH(3) (5S)). These conformational preferences are reflected in the higher tendency of (4S)Azp-containing peptides to form cyclic peptides with all-cis amide bonds compared to (4R)Azp derivatives. Ab initio calculations demonstrate that the strength of the azido gauche effect is comparable to that of the well-known "fluorine gauche effect". For azidoethane derivatives N(3)-CH(2)CH(2)-X (X = N(3), NHCOH, NHAc, or N(CH(3))Ac), the ab initio calculations revealed energy differences of 5-13 kJ mol(-)(1) between the anti and gauche conformations in favor of the gauche conformer. Calculations were also performed for the (4R)Azp and (4S)Azp derivatives 5R and 5S, supporting the experimentally observed data.
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Affiliation(s)
- Louis-Sebastian Sonntag
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, CH-4056 Basel, Switzerland
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Disch JS, Staples RJ, Concolino TE, Haas TE, Rybak-Akimova EV. Nickel(II) Cyclidenes with Appended Ethylpyridine Receptor Centers as Molecular Tweezers for Dicarboxylic Acids. Inorg Chem 2003; 42:6749-63. [PMID: 14552627 DOI: 10.1021/ic0345572] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A series of 14-, 15-, and 16-membered nickel(II) cyclidene macrocycles appended with 2-aminoethyl(2-pyridine) receptors I-III, respectively, were prepared and characterized by X-ray crystallography and NMR techniques. The 14- and 15-membered macrocycles I and II exist in a planar or extended Z-configuration, whereas the 16-membered macrocycle III was saddle shaped and had two asymmetric configurations in the unit cell (IIIa in a "capped" configuration and IIIb in an "open" configuration). Variable-temperature (1)H NMR studies of III in CD(3)CN were conducted (25-65 degrees C), and at room temperature, the interconversion between capping and uncapping is slow on the NMR time scale, resulting in a broad spectrum, whereas at 65 degrees C, interconversion was fast. (1)H NMR binding studies indicated I-III bind unsaturated dicarboxylic acids in a 1:1 stoichiometry with binding constants approaching 400 M(-)(1) in CD(3)CN, and the binding strength was dependent on the shape of the macrocyclic cyclidene platforms, whereas monocarboxylic acids were not bound. Generally, the planar 14-membered cyclidene I bound diacids the weakest and the 16-membered cyclidene III bound diacids the strongest. The presence of nuclear Overhauser effect spectrometry cross peaks in a 20 mM solution of 1:1 II-maleic acid indicates that the binding mode is ditopic with the guest being encapsulated by the aminoethylpyridine arms above the macrocyclic framework.
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Affiliation(s)
- Jeremy S Disch
- Department of Chemistry, Tufts University, Medford, Massachusetts 02155, USA
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Costas M, Xifra R, Llobet A, Solà M, Robles J, Parella T, Stoeckli-Evans H, Neuburger M. Dinuclear copper(I) complexes with hexaaza macrocyclic dinucleating ligands: structure and dynamic properties. Inorg Chem 2003; 42:4456-68. [PMID: 12844320 DOI: 10.1021/ic0261833] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The synthesis and structural and spectroscopic characterization of a family of copper(I) complexes, containing a dinucleating hexaaza macrocyclic ligand, of general formula [Cu(2)(L)(X)(2)](2+) (L = Me2p, Me2m, Me3p, or Me3m; X = MeCN, n-PrCN, CO, t-BuNC, or PPh(3)) is described. This family of complexes contains ligands that differ from one another in the number of methylenic units linking the tertiary amines and in the meta or para substitution of their aromatic rings. The structural characterization in the solid-state includes a single-crystal X-ray diffraction analysis of [Cu(2)(Me2p)(CO)(2)](2+) and of [Cu(2)(Me2m)(t-BuNC)(2)](2+). In solution, those complexes are structurally characterized through NMR spectroscopy that also allows us to put forward and establish their fluxional behavior. Theoretical calculations at the DFT level have also been performed in order to further analyze the relative energy of the different potential isomers as well as to gain insight into their chemical properties. Finally, the influence of the hexaaza ligands over different structural aspects as well as on its potential chemical reactivity is discussed.
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Affiliation(s)
- Miquel Costas
- Departament de Química, Universitat de Girona, Campus de Montilivi E-17071, Girona, Spain
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Cavelier F, Vivet B, Martinez J, Aubry A, Didierjean C, Vicherat A, Marraud M. Influence of silaproline on peptide conformation and bioactivity. J Am Chem Soc 2002; 124:2917-23. [PMID: 11902882 DOI: 10.1021/ja017440q] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The analogue gamma-(dimethylsila)-proline, denoted silaproline (Sip), was synthesized in both enantiomerically pure forms by diastereoselective alkylation of a chiral glycine equivalent with use of Schöllkopf's bis-lactim ether method. The effect of replacing a proline residue in model peptides by this new proline surrogate has been examined in the crystal state by X-ray diffraction and in solution by IR absorption and NMR techniques. Silaproline and proline-containing sequences exhibit very similar conformational properties. Silaproline was also substituted for proline in a neurotensin (8-13) analogue that retained biological activity and exhibited enhanced resistance to biodegradation.
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Affiliation(s)
- Florine Cavelier
- Laboratoire des Amino acides, Peptides et Protéines, UMR-CNRS 5810, Universités de Montpellier I et II, UM II, CC19-34095 Montpellier Cedex 05, France
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Pullen AE, Faulmann C, Pokhodnya KI, Cassoux P, Tokumoto M. Structural and Magnetic Properties of M(mnt)(2) Salts (M = Ni, Pt, Cu) with a Ferrocene-Based Cation, [FcCH(2)N(CH(3))(3)](+). Interplay between M.M and M.S Intermolecular Interactions. Inorg Chem 1998; 37:6714-6720. [PMID: 11670803 DOI: 10.1021/ic980876v] [Citation(s) in RCA: 106] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A series of metal bis-mnt complexes (mnt = 1,2-dithiolatomaleonitrile) with the trimethylammonium methylferrocene cation have been synthesized and characterized using X-ray diffraction, magnetic susceptibility, and differential scanning calorimetry measurements. The complexes have the formulas (FcCH(2)NMe(3))[Ni(mnt)(2)] (2), (FcCH(2)NMe(3))[Pt(mnt)(2)] (3), and (FcCH(2)NMe(3))(2)[Cu(mnt)(2)] (4) (where Fc = ferrocene). At 300 K, the crystal structures of 1:1 complexes 2 and 3 are very similar. They consist of pairs of [M(mnt)(2)](-) in a slipped configuration packed in stacks. Each [M(mnt)(2)](-) stack is separated from adjacent stacks by two columns of cations. Within the pairs, the [M(mnt)(2)](-) anions interact via short M.S contacts, while there are no short contacts between the pairs. Complex 4, which has a 2:1 stoichiometry, exhibits a markedly different packing arrangement of the anionic units. Due to the special position of the Cu atom in the asymmetric unit cell, [Cu(mnt)(2)](2)(-) dianions are completely isolated from each other. The magnetic susceptibility behavior of the nickel complex is consistent with the presence of magnetically isolated, antiferromagnetically (AF) coupled [Ni(mnt)(2)](-) pairs with the AF exchange parameter, J = -840 cm(-)(1). The platinum complex undergoes an endothermic structural phase transition (T(p)) at 247 K. Below T(p) its structure is characterized by the formation of magnetically isolated [Pt(mnt)(2)](2)(2)(-) dimers in an eclipsed configuration with short Pt.Pt and S.S contacts between monomers. In the magnetic properties, the structural changes reveal themselves as an abrupt susceptibility drop implying a substantial increase of the AF exchange parameter. A mechanism of the phase transition in the platinum compound is proposed. For compound 4, paramagnetic behavior is observed.
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Affiliation(s)
- Anthony E. Pullen
- Equipe Précurseurs Moléculaires et Matériaux, LCC-CNRS, 205 Route de Narbonne, 31077 Toulouse Cédex, France, and Electrotechnical Laboratory, 1-1-4 Umezono, Tsukuba, Ibaraki 305, Japan
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Patoux C, Coudret C, Launay JP, Joachim C, Gourdon A. Topological Effects on Intramolecular Electron Transfer via Quantum Interference. Inorg Chem 1997. [DOI: 10.1021/ic970013m] [Citation(s) in RCA: 219] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Cendrine Patoux
- Molecular Electronics Group, Centre d'Elaboration de Matériaux et d'Etudes Structurales, UPR 8011, CNRS, 29 rue Jeanne Marvig, 31055 Toulouse Cedex, France
| | - Christophe Coudret
- Molecular Electronics Group, Centre d'Elaboration de Matériaux et d'Etudes Structurales, UPR 8011, CNRS, 29 rue Jeanne Marvig, 31055 Toulouse Cedex, France
| | - Jean-Pierre Launay
- Molecular Electronics Group, Centre d'Elaboration de Matériaux et d'Etudes Structurales, UPR 8011, CNRS, 29 rue Jeanne Marvig, 31055 Toulouse Cedex, France
| | - Christian Joachim
- Molecular Electronics Group, Centre d'Elaboration de Matériaux et d'Etudes Structurales, UPR 8011, CNRS, 29 rue Jeanne Marvig, 31055 Toulouse Cedex, France
| | - André Gourdon
- Molecular Electronics Group, Centre d'Elaboration de Matériaux et d'Etudes Structurales, UPR 8011, CNRS, 29 rue Jeanne Marvig, 31055 Toulouse Cedex, France
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Wendeler M, Fattah J, Twyman JM, Edwards AJ, Dobson CM, Heyes SJ, Prout K. Combination of CP/MAS NMR Spectroscopy and X-ray Crystallography: Structure and Dynamics in Molecular Crystals of Hydrogen, Lithium, Sodium, Rubidium, and Cesium Penicillin V. J Am Chem Soc 1997. [DOI: 10.1021/ja9640657] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Michaela Wendeler
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
| | - Jamila Fattah
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
| | - J. Mark Twyman
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
| | - Alison J. Edwards
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
| | - Christopher M. Dobson
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
| | - Stephen J. Heyes
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
| | - Keith Prout
- Contribution from the Inorganic Chemistry Laboratory, South Parks Road, Oxford OX1 3QR, U.K., the Chemical Crystallography Laboratory, 9 Parks Road, Oxford OX1 3PD, U.K., and the Oxford Centre for Molecular Sciences, South Parks Road, Oxford, OX1 3QT U.K
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Constable EC, Heirtzler F, Neuburger M, Zehnder M. Steric Control of Directional Isomerism in Dicopper(I) Helicates of Asymmetrically Substituted 2,2‘:6‘,2‘‘:2‘‘,6‘‘‘-Quaterpyridine Derivatives. J Am Chem Soc 1997. [DOI: 10.1021/ja9623626] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- E. C. Constable
- Contribution from the Institut für Anorganische Chemie, Universität Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - F. Heirtzler
- Contribution from the Institut für Anorganische Chemie, Universität Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - M. Neuburger
- Contribution from the Institut für Anorganische Chemie, Universität Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - M. Zehnder
- Contribution from the Institut für Anorganische Chemie, Universität Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
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Herrmann WA, Goossen LJ, Artus GRJ, Köcher C. Metal Complexes of Chiral Imidazolin-2-ylidene Ligands. Organometallics 1997. [DOI: 10.1021/om960784i] [Citation(s) in RCA: 117] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Bandoli G, Grassi A, Pappalardo GC. X-ray molecular structures and theoretical conformational studies of narcotic analgesics alpha-(-)-N-cis-3-chloroallyl-normetazocine, ethylketazocine, and ketazocine. J Pharm Sci 1993; 82:821-8. [PMID: 8104247 DOI: 10.1002/jps.2600820814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The X-ray molecular structures of the narcotic analgesics alpha-(-)-2-cis-3-chlorallyl-2'-hydroxy-5,9-dimethyl-6,7-benzomorp han (1) and alpha-(+-)-2-cyclopropylmethyl-2'-hydroxy-5-ethyl-9-methyl-8-oxo-6,7- benzomorphan (ethylketazocine, 2) were determined. The structures and conformations in the crystal were compared and discussed with respect to that of alpha-(+-)-2-cyclopropylmethyl-2'-hydroxy-5,9-dimethyl-8- oxo-6,7-benzomorfan (ketazocine, 3) and those of 15 analogous compounds of the 2'-hydroxy-6,7-benzomorphan series whose structures were previously determined by X-ray analysis. Molecular modeling routines for 1, 2, and 3 produced configurations (N-equatorial) and conformations (distorted chair) of the piperidine ring that were in agreement with those found in the solids. Theoretical studies of the conformations and the rotational energetics of 1, 2, and 3 as cationic species were performed by both the force field (MM2) and the semiquantitative (AM1) methods. The latter method predicted three low energy conformations about N--C(12) and C(12)--C(13) bonds, one of these being more significantly populated (60-68%). The AM1 results were not reproduced by the MM2 method, which predicted four low energy conformations. An interesting common feature of 1, 2, and 3 that was noted with both methods was the restricted interconversion route from the conformational state to another through rotations about the C(12)--C(13) bond. The conformational results were discussed in terms of a working hypothesis for regulation of relative mu and kappa analgesic activities of benzomorphans.
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Affiliation(s)
- G Bandoli
- Dipartimento di Scienze Chimiche, Facoltà di Farmacia, Università di Cantania, Italy
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Amato ME, Bandoli G, Grassi A, Nicolini M, Pappalardo GC. Molecular determinants for drug–receptor interactions. Part 13. X-Ray molecular structure of naltrexone malonate and quantum chemical studies of the conformations of the pure narcotic antagonists naloxone and naltrexone. ACTA ACUST UNITED AC 1990. [DOI: 10.1039/p29900001757] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Tollenaere JP, Moereels H, Van Loon M. On conformation analysis, molecular graphics, fentanyl and its derivatives. PROGRESS IN DRUG RESEARCH. FORTSCHRITTE DER ARZNEIMITTELFORSCHUNG. PROGRES DES RECHERCHES PHARMACEUTIQUES 1986; 30:91-126. [PMID: 3544050 DOI: 10.1007/978-3-0348-9311-4_3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Maurer R. Comparative in vitro/in vivo autoradiography using the opiate ligand 3H-(-)-bremazocine. JOURNAL OF RECEPTOR RESEARCH 1984; 4:155-63. [PMID: 6098651 DOI: 10.3109/10799898409042546] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Autoradiograms of rat brain sections were compared obtained from animals receiving a tritiated drug through intravenous injection or from precut sections incubated in vitro. The benzomorphan analogue 3H-(-)-bremazocine was used as ligand and its distribution to all different opioid binding sites was followed. Although the general distribution of opioid binding sites visualized on 3H-LKB ultrofilms was independent of the methodological approach used, the maximal number of such sites (Bmax) was greater in brain sections incubated in vitro than after in vivo drug application. Since the number of binding sites is highly dependent on the particular incubation condition used, this finding has no further relevance.
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