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Nguyen AT, Drealan MW, Khue Luu D, Jiang M, Xu J, Cheng J, Zhao Q, Keefer EW, Yang Z. A portable, self-contained neuroprosthetic hand with deep learning-based finger control. J Neural Eng 2021; 18. [PMID: 34571503 DOI: 10.1088/1741-2552/ac2a8d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 09/27/2021] [Indexed: 01/07/2023]
Abstract
Objective.Deep learning-based neural decoders have emerged as the prominent approach to enable dexterous and intuitive control of neuroprosthetic hands. Yet few studies have materialized the use of deep learning in clinical settings due to its high computational requirements.Approach.Recent advancements of edge computing devices bring the potential to alleviate this problem. Here we present the implementation of a neuroprosthetic hand with embedded deep learning-based control. The neural decoder is designed based on the recurrent neural network architecture and deployed on the NVIDIA Jetson Nano-a compacted yet powerful edge computing platform for deep learning inference. This enables the implementation of the neuroprosthetic hand as a portable and self-contained unit with real-time control of individual finger movements.Main results.A pilot study with a transradial amputee is conducted to evaluate the proposed system using peripheral nerve signals acquired from implanted intrafascicular microelectrodes. The preliminary experiment results show the system's capabilities of providing robust, high-accuracy (95%-99%) and low-latency (50-120 ms) control of individual finger movements in various laboratory and real-world environments.Conclusion.This work is a technological demonstration of modern edge computing platforms to enable the effective use of deep learning-based neural decoders for neuroprosthesis control as an autonomous system.Significance.The proposed system helps pioneer the deployment of deep neural networks in clinical applications underlying a new class of wearable biomedical devices with embedded artificial intelligence.Clinical trial registration: DExterous Hand Control Through Fascicular Targeting (DEFT). Identifier: NCT02994160.
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Affiliation(s)
- Anh Tuan Nguyen
- Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States of America.,Fasikl Incorporated, Minneapolis, MN, United States of America
| | - Markus W Drealan
- Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States of America
| | - Diu Khue Luu
- Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States of America
| | - Ming Jiang
- Computer Science and Engineering, University of Minnesota, Minneapolis, MN, United States of America
| | - Jian Xu
- Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States of America
| | - Jonathan Cheng
- Plastic Surgery, University of Texas Southwestern Medical Center, Dallas, TX, United States of America
| | - Qi Zhao
- Computer Science and Engineering, University of Minnesota, Minneapolis, MN, United States of America
| | - Edward W Keefer
- Nerves Incorporated, Dallas, TX, United States of America.,Fasikl Incorporated, Minneapolis, MN, United States of America
| | - Zhi Yang
- Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States of America.,Fasikl Incorporated, Minneapolis, MN, United States of America
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Luu DK, Nguyen AT, Jiang M, Xu J, Drealan MW, Cheng J, Keefer EW, Zhao Q, Yang Z. Deep Learning-Based Approaches for Decoding Motor Intent From Peripheral Nerve Signals. Front Neurosci 2021; 15:667907. [PMID: 34248481 PMCID: PMC8260935 DOI: 10.3389/fnins.2021.667907] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Accepted: 05/20/2021] [Indexed: 11/23/2022] Open
Abstract
Previous literature shows that deep learning is an effective tool to decode the motor intent from neural signals obtained from different parts of the nervous system. However, deep neural networks are often computationally complex and not feasible to work in real-time. Here we investigate different approaches' advantages and disadvantages to enhance the deep learning-based motor decoding paradigm's efficiency and inform its future implementation in real-time. Our data are recorded from the amputee's residual peripheral nerves. While the primary analysis is offline, the nerve data is cut using a sliding window to create a “pseudo-online” dataset that resembles the conditions in a real-time paradigm. First, a comprehensive collection of feature extraction techniques is applied to reduce the input data dimensionality, which later helps substantially lower the motor decoder's complexity, making it feasible for translation to a real-time paradigm. Next, we investigate two different strategies for deploying deep learning models: a one-step (1S) approach when big input data are available and a two-step (2S) when input data are limited. This research predicts five individual finger movements and four combinations of the fingers. The 1S approach using a recurrent neural network (RNN) to concurrently predict all fingers' trajectories generally gives better prediction results than all the machine learning algorithms that do the same task. This result reaffirms that deep learning is more advantageous than classic machine learning methods for handling a large dataset. However, when training on a smaller input data set in the 2S approach, which includes a classification stage to identify active fingers before predicting their trajectories, machine learning techniques offer a simpler implementation while ensuring comparably good decoding outcomes to the deep learning ones. In the classification step, either machine learning or deep learning models achieve the accuracy and F1 score of 0.99. Thanks to the classification step, in the regression step, both types of models result in a comparable mean squared error (MSE) and variance accounted for (VAF) scores as those of the 1S approach. Our study outlines the trade-offs to inform the future implementation of real-time, low-latency, and high accuracy deep learning-based motor decoder for clinical applications.
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Affiliation(s)
- Diu K Luu
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Anh T Nguyen
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States.,Fasikl Incorporated, Minneapolis, MN, United States
| | - Ming Jiang
- Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Jian Xu
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Markus W Drealan
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Jonathan Cheng
- Department of Plastic Surgery, University of Texas Southwestern Medical Center, Dallas, TX, United States.,Nerves Incorporated, Dallas, TX, United States
| | | | - Qi Zhao
- Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Zhi Yang
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN, United States.,Fasikl Incorporated, Minneapolis, MN, United States
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Nguyen AT, Xu J, Jiang M, Luu DK, Wu T, Tam WK, Zhao W, Drealan MW, Overstreet CK, Zhao Q, Cheng J, Keefer E, Yang Z. A bioelectric neural interface towards intuitive prosthetic control for amputees. J Neural Eng 2020; 17. [PMID: 33091891 DOI: 10.1088/1741-2552/abc3d3] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 10/22/2020] [Indexed: 01/17/2023]
Abstract
OBJECTIVE While prosthetic hands with independently actuated digits have become commercially available, state-of-the-art human-machine interfaces (HMI) only permit control over a limited set of grasp patterns, which does not enable amputees to experience sufficient improvement in their daily activities to make an active prosthesis useful. APPROACH Here we present a technology platform combining fully-integrated bioelectronics, implantable intrafascicular microelectrodes and deep learning-based artificial intelligence (AI) to facilitate this missing bridge by tapping into the intricate motor control signals of peripheral nerves. The bioelectric neural interface includes an ultra-low-noise neural recording system to sense electroneurography (ENG) signals from microelectrode arrays implanted in the residual nerves, and AI models employing the recurrent neural network (RNN) architecture to decode the subject's motor intention. MAIN RESULTS A pilot human study has been carried out on a transradial amputee. We demonstrate that the information channel established by the proposed neural interface is sufficient to provide high accuracy control of a prosthetic hand up to 15 degrees of freedom (DOF). The interface is intuitive as it directly maps complex prosthesis movements to the patient's true intention. SIGNIFICANCE Our study layouts the foundation towards not only a robust and dexterous control strategy for modern neuroprostheses at a near-natural level approaching that of the able hand, but also an intuitive conduit for connecting human minds and machines through the peripheral neural pathways. (Clinical trial identifier: NCT02994160).
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Affiliation(s)
- Anh Tuan Nguyen
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Jian Xu
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Ming Jiang
- Computer Science and Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Diu Khue Luu
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Tong Wu
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Wing-Kin Tam
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Wenfeng Zhao
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | - Markus W Drealan
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | | | - Qi Zhao
- Computer Science and Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
| | | | | | - Zhi Yang
- Biomedical Engineering, University of Minnesota Twin Cities, Minneapolis, Minnesota, UNITED STATES
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Xu J, Nguyen AT, Wu T, Zhao W, Luu DK, Yang Z. A Wide Dynamic Range Neural Data Acquisition System With High-Precision Delta-Sigma ADC and On-Chip EC-PC Spike Processor. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2020; 14:425-440. [PMID: 32031949 PMCID: PMC7310583 DOI: 10.1109/tbcas.2020.2972013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A high-performance, wide dynamic range, fully-integrated neural interface is one key component for many advanced bidirectional neuromodulation technologies. In this paper, to complement the previously proposed frequency-shaping amplifier (FSA) and high-precision electrical microstimulator, we will present a proof-of-concept design of a neural data acquisition (DAQ) system that includes a 15-bit, low-power Delta-Sigma analog-to-digital converter (ADC) and a real-time spike processor based on one exponential component-polynomial component (EC-PC) algorithm. High-precision data conversion with low power consumption and small chip area is achieved by employing several techniques, such as opamp-sharing, multi-bit successive approximation (SAR) quantizer, two-step summation, and ultra-low distortion data weighted averaging (DWA). The on-chip EC-PC engine enables low latency, automatic detection, and extraction of spiking activities, thus supporting closed-loop control, real-time data compression and /or neural information decoding. The prototype chip was fabricated in a 0.13 μm CMOS process and verified in both bench-top and In-Vivo experiments. Bench-top measurement results indicate the designed ADC achieves a peak signal-to-noise and distortion ratio (SNDR) of 91.8 dB and a dynamic range of 93.0 dB over a 10 kHz bandwidth, where the total power consumption of the modulator is only 20 μW at 1.0 V supply, corresponding to a figure-of-merit (FOM) of 31.4fJ /conversion-step. In In-Vivo experiments, the proposed DAQ system has been demonstrated to obtain high-quality neural activities from a rat's motor cortex and also greatly reduce recovery time from system saturation due to electrical microstimulation.
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Tam WK, Wu T, Zhao Q, Keefer E, Yang Z. Human motor decoding from neural signals: a review. BMC Biomed Eng 2019; 1:22. [PMID: 32903354 PMCID: PMC7422484 DOI: 10.1186/s42490-019-0022-z] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 07/21/2019] [Indexed: 01/24/2023] Open
Abstract
Many people suffer from movement disability due to amputation or neurological diseases. Fortunately, with modern neurotechnology now it is possible to intercept motor control signals at various points along the neural transduction pathway and use that to drive external devices for communication or control. Here we will review the latest developments in human motor decoding. We reviewed the various strategies to decode motor intention from human and their respective advantages and challenges. Neural control signals can be intercepted at various points in the neural signal transduction pathway, including the brain (electroencephalography, electrocorticography, intracortical recordings), the nerves (peripheral nerve recordings) and the muscles (electromyography). We systematically discussed the sites of signal acquisition, available neural features, signal processing techniques and decoding algorithms in each of these potential interception points. Examples of applications and the current state-of-the-art performance were also reviewed. Although great strides have been made in human motor decoding, we are still far away from achieving naturalistic and dexterous control like our native limbs. Concerted efforts from material scientists, electrical engineers, and healthcare professionals are needed to further advance the field and make the technology widely available in clinical use.
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Affiliation(s)
- Wing-kin Tam
- Department of Biomedical Engineering, University of Minnesota Twin Cities, 7-105 Hasselmo Hall, 312 Church St. SE, Minnesota, 55455 USA
| | - Tong Wu
- Department of Biomedical Engineering, University of Minnesota Twin Cities, 7-105 Hasselmo Hall, 312 Church St. SE, Minnesota, 55455 USA
| | - Qi Zhao
- Department of Computer Science and Engineering, University of Minnesota Twin Cities, 4-192 Keller Hall, 200 Union Street SE, Minnesota, 55455 USA
| | - Edward Keefer
- Nerves Incorporated, Dallas, TX P. O. Box 141295 USA
| | - Zhi Yang
- Department of Biomedical Engineering, University of Minnesota Twin Cities, 7-105 Hasselmo Hall, 312 Church St. SE, Minnesota, 55455 USA
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Xu J, Guo H, Nguyen AT, Lim H, Yang Z. A Bidirectional Neuromodulation Technology for Nerve Recording and Stimulation. MICROMACHINES 2018; 9:mi9110538. [PMID: 30715037 PMCID: PMC6267106 DOI: 10.3390/mi9110538] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Revised: 10/15/2018] [Accepted: 10/19/2018] [Indexed: 11/23/2022]
Abstract
Electrical nerve recording and stimulation technologies are critically needed to monitor and modulate nerve activity to treat a variety of neurological diseases. However, current neuromodulation technologies presented in the literature or commercially available products cannot support simultaneous recording and stimulation on the same nerve. To solve this problem, a new bidirectional neuromodulation system-on-chip (SoC) is proposed in this paper, which includes a frequency-shaping neural recorder and a fully integrated neural stimulator with charge balancing capability. In addition, auxiliary circuits consisting of power management and data transmission circuits are designed to provide the necessary power supply for the SoC and the bidirectional data communication between the SoC and an external computer via a universal serial bus (USB) interface, respectively. To achieve sufficient low input noise for sensing nerve activity at a sub-10 μV range, several noise reduction techniques are developed in the neural recorder. The designed SoC was fabricated in a 0.18 μm high-voltage Bipolar CMOS DMOS (BCD) process technology that was described in a previous publication and it has been recently tested in animal experiments that demonstrate the proposed SoC is capable of achieving reliable and simultaneous electrical stimulation and recording on the same nerve.
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Affiliation(s)
- Jian Xu
- Department of Biomedical Engineering, University of Minnesota, 312 Church Street SE, Minneapolis, MN 55455, USA.
| | - Hongsun Guo
- Department of Biomedical Engineering, University of Minnesota, 312 Church Street SE, Minneapolis, MN 55455, USA.
| | - Anh Tuan Nguyen
- Department of Biomedical Engineering, University of Minnesota, 312 Church Street SE, Minneapolis, MN 55455, USA.
| | - Hubert Lim
- Department of Biomedical Engineering, University of Minnesota, 312 Church Street SE, Minneapolis, MN 55455, USA.
- Department of Otolaryngology, Head and Neck Surgery, University of Minnesota, 516 Delaware Street SE, Minneapolis, MN 55455, USA.
- Institute for Translational Neuroscience, University of Minnesota, 2101 6th Street SE, Minneapolis, MN 55455, USA.
| | - Zhi Yang
- Department of Biomedical Engineering, University of Minnesota, 312 Church Street SE, Minneapolis, MN 55455, USA.
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Culaclii S, Kim B, Lo YK, Li L, Liu W. Online Artifact Cancelation in Same-Electrode Neural Stimulation and Recording Using a Combined Hardware and Software Architecture. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2018; 12:601-613. [PMID: 29877823 PMCID: PMC6299268 DOI: 10.1109/tbcas.2018.2816464] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Advancing studies of neural network dynamics and developments of closed-loop neural interfaces requires the ability to simultaneously stimulate and record the neural cells. Recording adjacent to or at the stimulation site produces artifact signals that are orders of magnitude larger than the neural responses of interest. These signals often saturate the recording amplifier causing distortion or loss of short-latency evoked responses. This paper proposes a method to cancel the artifact in simultaneous neural recording and stimulation on the same electrode. By combining a novel hardware architecture with concurrent software processing, the design achieves neural signal recovery in a wide range of conditions. The proposed system uniquely demonstrates same-electrode stimulation and recording, with neural signal recovery in presence of stimulation artifact 100 dB larger in magnitude than the underlying signals. The system is tested both in vitro and in vivo, during concurrent stimulation and recording on the same electrode. In vivo results in a rodent model are compared to recordings made by a commercial neural amplifier system connected in parallel.
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Zhao W, Sun B, Wu T, Yang Z. On-Chip Neural Data Compression Based On Compressed Sensing With Sparse Sensing Matrices. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2018; 12:242-254. [PMID: 29377812 DOI: 10.1109/tbcas.2017.2779503] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
On-chip neural data compression is an enabling technique for wireless neural interfaces that suffer from insufficient bandwidth and power budgets to transmit the raw data. The data compression algorithm and its implementation should be power and area efficient and functionally reliable over different datasets. Compressed sensing is an emerging technique that has been applied to compress various neurophysiological data. However, the state-of-the-art compressed sensing (CS) encoders leverage random but dense binary measurement matrices, which incur substantial implementation costs on both power and area that could offset the benefits from the reduced wireless data rate. In this paper, we propose two CS encoder designs based on sparse measurement matrices that could lead to efficient hardware implementation. Specifically, two different approaches for the construction of sparse measurement matrices, i.e., the deterministic quasi-cyclic array code (QCAC) matrix and -sparse random binary matrix [-SRBM] are exploited. We demonstrate that the proposed CS encoders lead to comparable recovery performance. And efficient VLSI architecture designs are proposed for QCAC-CS and -SRBM encoders with reduced area and total power consumption.
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Wu T, Zhao W, Guo H, Lim HH, Yang Z. A Streaming PCA VLSI Chip for Neural Data Compression. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2017; 11:1290-1302. [PMID: 28809707 DOI: 10.1109/tbcas.2017.2717281] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Neural recording system miniaturization and integration with low-power wireless technologies require compressing neural data before transmission. Feature extraction is a procedure to represent data in a low-dimensional space; its integration into a recording chip can be an efficient approach to compress neural data. In this paper, we propose a streaming principal component analysis algorithm and its microchip implementation to compress multichannel local field potential (LFP) and spike data. The circuits have been designed in a 65-nm CMOS technology and occupy a silicon area of 0.06 mm. Throughout the experiments, the chip compresses LFPs by 10 at the expense of as low as 1% reconstruction errors and 144-nW/channel power consumption; for spikes, the achieved compression ratio is 25 with 8% reconstruction errors and 3.05-W/channel power consumption. In addition, the algorithm and its hardware architecture can swiftly adapt to nonstationary spiking activities, which enables efficient hardware sharing among multiple channels to support a high-channel count recorder.
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