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Mostafavi M, Ko SB, Shokouhi SB, Ayatollahi A. Transfer learning and self-distillation for automated detection of schizophrenia using single-channel EEG and scalogram images. Phys Eng Sci Med 2025; 48:3-18. [PMID: 38652347 DOI: 10.1007/s13246-024-01420-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 03/25/2024] [Indexed: 04/25/2024]
Abstract
Schizophrenia (SZ) has been acknowledged as a highly intricate mental disorder for a long time. In fact, individuals with SZ experience a blurred line between fantasy and reality, leading to a lack of awareness about their condition, which can pose significant challenges during the treatment process. Due to the importance of the issue, timely diagnosis of this illness can not only assist patients and their families in managing the condition but also enable early intervention, which may help prevent its advancement. EEG is a widely utilized technique for investigating mental disorders like SZ due to its non-invasive nature, affordability, and wide accessibility. In this study, our main goal is to develop an optimized system that can achieve automatic diagnosis of SZ with minimal input information. To optimize the system, we adopted a strategy of using single-channel EEG signals and integrated knowledge distillation and transfer learning techniques into the model. This approach was designed to improve the performance and efficiency of our proposed method for SZ diagnosis. Additionally, to leverage the pre-trained models effectively, we converted the EEG signals into images using Continuous Wavelet Transform (CWT). This transformation allowed us to harness the capabilities of pre-trained models in the image domain, enabling automatic SZ detection with enhanced efficiency. To achieve a more robust estimate of the model's performance, we employed fivefold cross-validation. The accuracy achieved from the 5-s records of the EEG signal, along with the combination of self-distillation and VGG16 for the P4 channel, is 97.81. This indicates a high level of accuracy in diagnosing SZ using the proposed method.
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Affiliation(s)
- Mohammadreza Mostafavi
- Department of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Seok-Bum Ko
- Division of Biomedical Engineering, Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Canada.
| | - Shahriar Baradaran Shokouhi
- Department of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Ahmad Ayatollahi
- Department of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology, Tehran, Iran
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2
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Huang F, Huang Y, Guo S, Chang X, Chen Y, Wang M, Wang Y, Ren S. A review of studies on constructing classification models to identify mental illness using brain effective connectivity. Psychiatry Res Neuroimaging 2025; 346:111928. [PMID: 39626592 DOI: 10.1016/j.pscychresns.2024.111928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Revised: 10/17/2024] [Accepted: 11/25/2024] [Indexed: 12/16/2024]
Abstract
Brain effective connectivity (EC) is a functional measurement that reflects the causal effects and topological relationships of neural activities. Recent research has increasingly focused on the classification for mental illnesses and healthy controls using brain EC; however, no comprehensive reviews have synthesized these studies. Therefore, the aim of this review is to thoroughly examine the existing literature on constructing diagnosis model for mental illnesses using brain EC. We first conducted a systematical literature search and thirty-five papers met the inclusion criteria. Subsequently, we summarized the approaches for estimating EC, the classification and validation methods used, the accuracies of models, and the main findings. Finally, we discussed the limitations of current research and the challenges in future research. These summaries and discussion provide references for future research on mental illnesses identification based on brain EC.
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Affiliation(s)
- Fangfang Huang
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China.
| | - Yuan Huang
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China
| | - Siying Guo
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China
| | - Xiaoyi Chang
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China
| | - Yuqi Chen
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China
| | - Mingzhu Wang
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China
| | - Yingfang Wang
- Department of Preventive Medicine, College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology, Luoyang 471000, China
| | - Shuai Ren
- Luoyang Fifth People's Hospital, Luoyang 471027, China
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3
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Gütlin DC, McDermott HH, Grundei M, Auksztulewicz R. Model-Based Approaches to Investigating Mismatch Responses in Schizophrenia. Clin EEG Neurosci 2025; 56:8-21. [PMID: 38751125 PMCID: PMC11664892 DOI: 10.1177/15500594241253910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Revised: 02/09/2024] [Accepted: 04/23/2024] [Indexed: 12/24/2024]
Abstract
Alterations of mismatch responses (ie, neural activity evoked by unexpected stimuli) are often considered a potential biomarker of schizophrenia. Going beyond establishing the type of observed alterations found in diagnosed patients and related cohorts, computational methods can yield valuable insights into the underlying disruptions of neural mechanisms and cognitive function. Here, we adopt a typology of model-based approaches from computational cognitive neuroscience, providing an overview of the study of mismatch responses and their alterations in schizophrenia from four complementary perspectives: (a) connectivity models, (b) decoding models, (c) neural network models, and (d) cognitive models. Connectivity models aim at inferring the effective connectivity patterns between brain regions that may underlie mismatch responses measured at the sensor level. Decoding models use multivariate spatiotemporal mismatch response patterns to infer the type of sensory violations or to classify participants based on their diagnosis. Neural network models such as deep convolutional neural networks can be used for improved classification performance as well as for a systematic study of various aspects of empirical data. Finally, cognitive models quantify mismatch responses in terms of signaling and updating perceptual predictions over time. In addition to describing the available methodology and reviewing the results of recent computational psychiatry studies, we offer suggestions for future work applying model-based techniques to advance the study of mismatch responses in schizophrenia.
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Affiliation(s)
- Dirk C. Gütlin
- Department of Education and Psychology, Freie Universität Berlin, Berlin, Germany
| | - Hannah H. McDermott
- Department of Education and Psychology, Freie Universität Berlin, Berlin, Germany
| | - Miro Grundei
- Department of Education and Psychology, Freie Universität Berlin, Berlin, Germany
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Chen Y, Wang S, Zhang X, Yang Q, Hua M, Li Y, Qin W, Liu F, Liang M. Functional Connectivity-Based Searchlight Multivariate Pattern Analysis for Discriminating Schizophrenia Patients and Predicting Clinical Variables. Schizophr Bull 2024; 51:108-119. [PMID: 38819252 PMCID: PMC11661961 DOI: 10.1093/schbul/sbae084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
Abstract
BACKGROUND Schizophrenia, a multifaceted psychiatric disorder characterized by functional dysconnectivity, poses significant challenges in clinical practice. This study explores the potential of functional connectivity (FC)-based searchlight multivariate pattern analysis (CBS-MVPA) to discriminate between schizophrenia patients and healthy controls while also predicting clinical variables. STUDY DESIGN We enrolled 112 schizophrenia patients and 119 demographically matched healthy controls. Resting-state functional magnetic resonance imaging data were collected, and whole-brain FC subnetworks were constructed. Additionally, clinical assessments and cognitive evaluations yielded a dataset comprising 36 clinical variables. Finally, CBS-MVPA was utilized to identify subnetworks capable of effectively distinguishing between the patient and control groups and predicting clinical scores. STUDY RESULTS The CBS-MVPA approach identified 63 brain subnetworks exhibiting significantly high classification accuracies, ranging from 62.2% to 75.6%, in distinguishing individuals with schizophrenia from healthy controls. Among them, 5 specific subnetworks centered on the dorsolateral superior frontal gyrus, orbital part of inferior frontal gyrus, superior occipital gyrus, hippocampus, and parahippocampal gyrus showed predictive capabilities for clinical variables within the schizophrenia cohort. CONCLUSION This study highlights the potential of CBS-MVPA as a valuable tool for localizing the information related to schizophrenia in terms of brain network abnormalities and capturing the relationship between these abnormalities and clinical variables, and thus, deepens our understanding of the neurological mechanisms of schizophrenia.
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Affiliation(s)
- Yayuan Chen
- Department of Radiology, Tianjin Key Laboratory of Functional Imaging and Tianjin Institute of Radiology, Tianjin Medical University General Hospital, Tianjin, China
- School of Medical Imaging, Tianjin Key Laboratory of Functional Imaging and The Province and Ministry Cosponsored Collaborative Innovation Center for Medical Epigenetics, Tianjin Medical University, Tianjin, China
| | - Sijia Wang
- Department of Radiology, Tianjin Key Laboratory of Functional Imaging and Tianjin Institute of Radiology, Tianjin Medical University General Hospital, Tianjin, China
| | - Xi Zhang
- School of Medical Imaging, Tianjin Key Laboratory of Functional Imaging and The Province and Ministry Cosponsored Collaborative Innovation Center for Medical Epigenetics, Tianjin Medical University, Tianjin, China
| | - Qingqing Yang
- Department of Radiology, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China
| | - Minghui Hua
- Department of Radiology, Chest Hospital, Tianjin University, Tianjin, China
| | - Yifan Li
- School of Medical Imaging, Tianjin Key Laboratory of Functional Imaging and The Province and Ministry Cosponsored Collaborative Innovation Center for Medical Epigenetics, Tianjin Medical University, Tianjin, China
| | - Wen Qin
- Department of Radiology, Tianjin Key Laboratory of Functional Imaging and Tianjin Institute of Radiology, Tianjin Medical University General Hospital, Tianjin, China
| | - Feng Liu
- Department of Radiology, Tianjin Key Laboratory of Functional Imaging and Tianjin Institute of Radiology, Tianjin Medical University General Hospital, Tianjin, China
| | - Meng Liang
- School of Medical Imaging, Tianjin Key Laboratory of Functional Imaging and The Province and Ministry Cosponsored Collaborative Innovation Center for Medical Epigenetics, Tianjin Medical University, Tianjin, China
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Tang Y, Huang W, Liu R, Yu Y. Learning Interpretable Brain Functional Connectivity via Self-Supervised Triplet Network With Depth-Wise Attention. IEEE J Biomed Health Inform 2024; 28:6685-6698. [PMID: 39028590 DOI: 10.1109/jbhi.2024.3429169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2024]
Abstract
Brain functional connectivity has been widely explored to reveal the functional interaction dynamics between the brain regions. However, conventional connectivity measures rely on deterministic models demanding application-specific empirical analysis, while deep learning approaches focus on finding discriminative features for state classification, having limited capability to capture the interpretable connectivity characteristics. To address the challenges, this study proposes a self-supervised triplet network with depth-wise attention (TripletNet-DA) to generate the functional connectivity: 1) TripletNet-DA firstly utilizes channel-wise transformations for temporal data augmentation, where the correlated & uncorrelated sample pairs are constructed for self-supervised training, 2) Channel encoder is designed with a convolution network to extract the deep features, while similarity estimator is employed to generate the similarity pairs and the functional connectivity representations, 3) TripletNet-DA applies Triplet loss with anchor-negative similarity penalty for model training, where the similarities of uncorrelated sample pairs are minimized to enhance model's learning capability. Experimental results on pathological EEG datasets (Autism Spectrum Disorder, Major Depressive Disorder) indicate that 1) TripletNet-DA demonstrates superiority in both ASD discrimination and MDD classification than the state-of-the-art counterparts, where the connectivity features in beta & gamma bands have respectively achieved the accuracy of 97.05%, 98.32% for ASD discrimination, 89.88%, 91.80% for MDD classification in the eyes-closed condition and 90.90%, 92.26% in the eyes-open condition, 2) TripletNet-DA enables to uncover significant differences of functional connectivity between ASD EEG and TD ones, and the prominent connectivity links are in accordance with the empirical findings, thus providing potential biomarkers for clinical ASD analysis.
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Shang S, Shi Y, Zhang Y, Liu M, Zhang H, Wang P, Zhuang L. Artificial intelligence for brain disease diagnosis using electroencephalogram signals. J Zhejiang Univ Sci B 2024; 25:914-940. [PMID: 39420525 PMCID: PMC11494159 DOI: 10.1631/jzus.b2400103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Accepted: 08/27/2024] [Indexed: 10/19/2024]
Abstract
Brain signals refer to electrical signals or metabolic changes that occur as a consequence of brain cell activity. Among the various non-invasive measurement methods, electroencephalogram (EEG) stands out as a widely employed technique, providing valuable insights into brain patterns. The deviations observed in EEG reading serve as indicators of abnormal brain activity, which is associated with neurological diseases. Brain‒computer interface (BCI) systems enable the direct extraction and transmission of information from the human brain, facilitating interaction with external devices. Notably, the emergence of artificial intelligence (AI) has had a profound impact on the enhancement of precision and accuracy in BCI technology, thereby broadening the scope of research in this field. AI techniques, encompassing machine learning (ML) and deep learning (DL) models, have demonstrated remarkable success in classifying and predicting various brain diseases. This comprehensive review investigates the application of AI in EEG-based brain disease diagnosis, highlighting advancements in AI algorithms.
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Affiliation(s)
- Shunuo Shang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China
- The MOE Frontier Science Center for Brain Science & Brain-Machine Integration, Zhejiang University, Hangzhou 310027, China
| | - Yingqian Shi
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China
| | - Yajie Zhang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China
| | - Mengxue Liu
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China
| | - Hong Zhang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China
| | - Ping Wang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China.
- The MOE Frontier Science Center for Brain Science & Brain-Machine Integration, Zhejiang University, Hangzhou 310027, China.
- The State Key Lab of Brain-Machine Intelligence, Zhejiang University, Hangzhou 310027, China.
| | - Liujing Zhuang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027, China.
- The State Key Lab of Brain-Machine Intelligence, Zhejiang University, Hangzhou 310027, China.
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Aziz S, Khan MU, Iqtidar K, Fernandez-Rojas R. Diagnosis of Schizophrenia Using EEG Sensor Data: A Novel Approach with Automated Log Energy-Based Empirical Wavelet Reconstruction and Cepstral Features. SENSORS (BASEL, SWITZERLAND) 2024; 24:6508. [PMID: 39459990 PMCID: PMC11510732 DOI: 10.3390/s24206508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Revised: 09/30/2024] [Accepted: 10/08/2024] [Indexed: 10/28/2024]
Abstract
Schizophrenia (SZ) is a severe mental disorder characterised by disruptions in cognition, behaviour, and perception, significantly impacting an individual's life. Traditional SZ diagnosis methods are labour-intensive and prone to errors. This study presents an innovative automated approach for detecting SZ acquired through electroencephalogram (EEG) sensor signals, aiming to improve diagnostic efficiency and accuracy. We utilised Fast Independent Component Analysis to remove artefacts from raw EEG sensor data. A novel Automated Log Energy-based Empirical Wavelet Reconstruction (ALEEWR) technique was introduced to reconstruct decomposed modes based on their variability, ensuring effective extraction of meaningful EEG signatures. Cepstral-based features-cepstral activity, cepstral mobility, and cepstral complexity-were used to capture the power, rate of change, and irregularity of the cepstrum of preprocessed EEG signals. ANOVA-based feature selection was applied to refine these features before classification using the K-Nearest Neighbour (KNN) algorithm. Our approach achieved an exceptional accuracy of 99.4%, significantly surpassing previous methods. The proposed ALEEWR and cepstral analysis demonstrated high precision, sensitivity, and specificity in the automated diagnosis of schizophrenia. This study introduces a highly accurate and efficient method for SZ detection using EEG technology. The proposed techniques offer significant improvements in diagnostic accuracy, with potential implications for enhancing SZ diagnosis and patient care through automated systems.
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Affiliation(s)
- Sumair Aziz
- Human-Centred Technology Research Centre, Faculty of Science and Technology, University of Canberra, Canberra, ACT 2617, Australia; (S.A.); (R.F.-R.)
| | - Muhammad Umar Khan
- Human-Centred Technology Research Centre, Faculty of Science and Technology, University of Canberra, Canberra, ACT 2617, Australia; (S.A.); (R.F.-R.)
| | - Khushbakht Iqtidar
- Department of Computer and Software Engineering, National University of Sciences and Technology, Islamabad 44000, ICT, Pakistan;
| | - Raul Fernandez-Rojas
- Human-Centred Technology Research Centre, Faculty of Science and Technology, University of Canberra, Canberra, ACT 2617, Australia; (S.A.); (R.F.-R.)
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8
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Sahu PK, Jain K. Schizophrenia diagnosis using the GRU-layer's alpha-EEG rhythm's dependability. Psychiatry Res Neuroimaging 2024; 344:111886. [PMID: 39217668 DOI: 10.1016/j.pscychresns.2024.111886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 07/21/2024] [Accepted: 08/26/2024] [Indexed: 09/04/2024]
Abstract
Verifying schizophrenia (SZ) can be assisted by deep learning techniques and patterns in brain activity observed in alpha-EEG recordings. The suggested research provides evidence of the reliability of alpha-EEG rhythm in a Gated-Recurrent-Unit-based deep-learning model for investigating SZ. This study suggests Rudiment Densely-Coupled Convolutional Gated Recurrent Unit (RDCGRU) for the various EEG-rhythm-based (gamma, beta, alpha, theta, and delta) diagnoses of SZ. The model includes multiple 1-D-Convolution (Con-1-D) folds with steps greater than 1, which enables the model to programmatically and effectively learn how to reduce the incoming signal. The Con-1-D layers and numerous Gated Recurrent Unit (GRU) layers comprise the Exponential-Linear-Unit activation function. This powerful activation function facilitates in-deep-network training and improves classification performance. The Densely-Coupled Convolutional Gated Recurrent Unit (DCGRU) layers enable RDCGRU to address the training accuracy loss brought on by vanishing or exploding gradients, and this might make it possible to develop intense, deep versions of RDCGRU for more complex problems. The sigmoid activation function is implemented in the digital (binary) classifier's output nodes. The RDCGRU deep learning model attained the most excellent accuracy, 88.88 %, with alpha-EEG rhythm. The research achievements: The RDCGRU deep learning model's GRU cells responded superiorly to the alpha-EEG rhythm in EEG-based verification of SZ.
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Affiliation(s)
- Pankaj Kumar Sahu
- Department of Instrumentation and Control Engineering, Dr B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144008, India.
| | - Karan Jain
- Department of Instrumentation and Control Engineering, Dr B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144008, India
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9
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Ranjan R, Sahana BC. Multiresolution feature fusion for smart diagnosis of schizophrenia in adolescents using EEG signals. Cogn Neurodyn 2024; 18:2779-2807. [PMID: 39555262 PMCID: PMC11564624 DOI: 10.1007/s11571-024-10120-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 04/07/2024] [Accepted: 04/22/2024] [Indexed: 11/19/2024] Open
Abstract
Numerous studies on early detection of schizophrenia (SZ) have utilized all available channels or employed set of a few time domain or frequency domain features, while a limited number of features may not be sufficient enough to perform diagnosis efficiently. To encounter these problems, an automated diagnosis model is proposed for the efficient diagnosis of schizophrenia symptomatic adolescent subjects from electroencephalogram (EEG) signals via machine intelligence. A publicly accessible EEG dataset featuring 16-channels EEG obtained from 84 adolescents (45 SZ symptomatic and 39 healthy control) is used to demonstrate the work. Initially, the signals are decomposed into sub-bands using two multi-resolution signal analysis methods: Empirical Wavelet Transform and Empirical mode decomposition. 75 unique features from each sub-bands are extracted and the few selective prominent features are applied to machine learning classifiers for optimal sub-band selection. Subsequently, a hybrid model is proposed, combining convolutional neural network (CNN) and ensemble bagged tree, incorporating both deep learning and handcrafted features to perform SZ diagnosis. This innovative model achieved superior classification performance compared to existing methods, offering a promising approach for SZ diagnosis. Furthermore, the study explores the impact of different brain regions and combined regional data in SZ diagnosis comprehensively. Hence, this computer-assisted decision-making model minimizes the limitations of prior studies by providing a more robust and efficient diagnostic system for schizophrenia.
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Affiliation(s)
- Rakesh Ranjan
- Department of Electronics and Communication Engineering, National Institute of Technology Patna, Patna-, 800005 India
| | - Bikash Chandra Sahana
- Department of Electronics and Communication Engineering, National Institute of Technology Patna, Patna-, 800005 India
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10
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Bagherzadeh S, Shalbaf A. EEG-based schizophrenia detection using fusion of effective connectivity maps and convolutional neural networks with transfer learning. Cogn Neurodyn 2024; 18:2767-2778. [PMID: 39555286 PMCID: PMC11564470 DOI: 10.1007/s11571-024-10121-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Revised: 04/08/2024] [Accepted: 04/28/2024] [Indexed: 11/19/2024] Open
Abstract
Schizophrenia (SZ) is a serious mental disorder that can mainly be distinguished by symptoms including delusions and hallucinations. This mental disorder makes difficult conditions for the person and her/his relatives. Electroencephalogram (EEG) signal is a sophisticated neuroimaging technique that helps neurologists to diagnose this mental disorder. Estimating and evaluating brain effective connectivity between electrode pairs is an appropriate way of diagnosing brain states in neuroscience studies. In this study, we construct a novel image from multi-channels of EEG based on the fusion of three effective connectivity, partial directed coherence (PDC), and direct directed transfer function (dDTF) and transfer entropy (TE) at three consecutive time windows. Then, this image was used as input of five well-known convolutional neural networks (CNNs) through transfer learning (TL) to learn patterns related to SZ patients to diagnose this disorder from normal participants from two public databases. Also, the majority voting method was used to improve these results based on ensemble results of the five CNNs, i.e., ResNet-50, Inception-v3, DenseNet-201, EfficientNetB0, and NasNet-Mobile. The highest average accuracy, specificity and sensitivity to diagnose SZ patients from healthy participants were obtained using EfficientNetB0 through the Leave-One-Subject-out (LOSO) Cross-Validation criterion equal to 96.67%, 96.23%, 96.82%, 95.15%, 94.42% and 96.28% for the first and second databases, respectively. Also, as we suggested, the ensemble approach of EfficientNetB0, ResNet-50 and NasNet-Mobile increased the accuracy by approximately 3%. Our results show the effectiveness of providing fused images from multichannel EEG signals to the ensemble of CNNs through TL to diagnose SZ than state-of-the-art studies.
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Affiliation(s)
- Sara Bagherzadeh
- Department of Biomedical Engineering, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Ahmad Shalbaf
- Department of Biomedical Engineering and Medical Physics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
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Al Fahoum A, Zyout A. Wavelet Transform, Reconstructed Phase Space, and Deep Learning Neural Networks for EEG-Based Schizophrenia Detection. Int J Neural Syst 2024; 34:2450046. [PMID: 39010724 DOI: 10.1142/s0129065724500461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
This study proposes an innovative expert system that uses exclusively EEG signals to diagnose schizophrenia in its early stages. For diagnosing psychiatric/neurological disorders, electroencephalogram (EEG) testing is considered a financially viable, safe, and reliable alternative. Using the reconstructed phase space (RPS) and the continuous wavelet transform, the researchers maximized the differences between the EEG nonstationary signals of normal and schizophrenia individuals, which cannot be observed in the time, frequency, or time-frequency domains. This reveals significant information, highlighting more distinguishable features. Then, a deep learning network was trained to enhance the accuracy of the resulting image classification. The algorithm's efficacy was confirmed through three distinct methods: employing 70% of the dataset for training, 15% for validation, and the remaining 15% for testing. This was followed by a 5-fold cross-validation technique and a leave-one-out classification approach. Each method was iterated 100 times to ascertain the algorithm's robustness. The performance metrics derived from these tests - accuracy, precision, sensitivity, F1 score, Matthews correlation coefficient, and Kappa - indicated remarkable outcomes. The algorithm demonstrated steady performance across all evaluation strategies, underscoring its relevance and reliability. The outcomes validate the system's accuracy, precision, sensitivity, and robustness by showcasing its capability to autonomously differentiate individuals diagnosed with schizophrenia from those in a state of normal health.
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Affiliation(s)
- Amjed Al Fahoum
- Biomedical Systems and Informatics Engineering Department, Yarmouk University, Irbid 21163, Jordan
| | - Ala'a Zyout
- Biomedical Systems and Informatics Engineering Department, Yarmouk University, Irbid 21163, Jordan
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12
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Alazzawı A, Aljumaili S, Duru AD, Uçan ON, Bayat O, Coelho PJ, Pires IM. Schizophrenia diagnosis based on diverse epoch size resting-state EEG using machine learning. PeerJ Comput Sci 2024; 10:e2170. [PMID: 39314693 PMCID: PMC11419632 DOI: 10.7717/peerj-cs.2170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 06/11/2024] [Indexed: 09/25/2024]
Abstract
Schizophrenia is a severe mental disorder that impairs a person's mental, social, and emotional faculties gradually. Detection in the early stages with an accurate diagnosis is crucial to remedying the patients. This study proposed a new method to classify schizophrenia disease in the rest state based on neurologic signals achieved from the brain by electroencephalography (EEG). The datasets used consisted of 28 subjects, 14 for each group, which are schizophrenia and healthy control. The data was collected from the scalps with 19 EEG channels using a 250 Hz frequency. Due to the brain signal variation, we have decomposed the EEG signals into five sub-bands using a band-pass filter, ensuring the best signal clarity and eliminating artifacts. This work was performed with several scenarios: First, traditional techniques were applied. Secondly, augmented data (additive white Gaussian noise and stretched signals) were utilized. Additionally, we assessed Minimum Redundancy Maximum Relevance (MRMR) as the features reduction method. All these data scenarios are applied with three different window sizes (epochs): 1, 2, and 5 s, utilizing six algorithms to extract features: Fast Fourier Transform (FFT), Approximate Entropy (ApEn), Log Energy entropy (LogEn), Shannon Entropy (ShnEn), and kurtosis. The L2-normalization method was applied to the derived features, positively affecting the results. In terms of classification, we applied four algorithms: K-nearest neighbor (KNN), support vector machine (SVM), quadratic discriminant analysis (QDA), and ensemble classifier (EC). From all the scenarios, our evaluation showed that SVM had remarkable results in all evaluation metrics with LogEn features utilizing a 1-s window size, impacting the diagnosis of Schizophrenia disease. This indicates that an accurate diagnosis of schizophrenia can be achieved through the right features and classification model selection. Finally, we contrasted our results to recently published works using the same and a different dataset, where our method showed a notable improvement.
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Affiliation(s)
- Athar Alazzawı
- Electrical and Computer Engineering, School of Engineering and Natural Sciences, Altinbaş University, Istanbul, Turkey
| | - Saif Aljumaili
- Electrical and Computer Engineering, School of Engineering and Natural Sciences, Altinbaş University, Istanbul, Turkey
| | - Adil Deniz Duru
- Neuroscience and Psychology Research in Sports Lab, Faculty of Sport Science, Marmara University Istanbul, Istanbul, Turkey
| | - Osman Nuri Uçan
- Electrical and Computer Engineering, School of Engineering and Natural Sciences, Altinbaş University, Istanbul, Turkey
| | - Oğuz Bayat
- Electrical and Computer Engineering, School of Engineering and Natural Sciences, Altinbaş University, Istanbul, Turkey
| | - Paulo Jorge Coelho
- Polytechnic Institute of Leiria, Leiria, Portugal
- Institute for Systems Engineering and Computers at Coimbra (INESC Coimbra), Coimbra, Portugal
| | - Ivan Miguel Pires
- Instituto de Telecomunicações, Escola Superior de Tecnologia e Gestão de Águeda, Universidade de Aveiro, Águeda, Portugal
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13
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Kim YT, Kim H, So M, Kong J, Kim KT, Hong JH, Son Y, Sa JK, Do S, Han JH, Kim JB. Differentiating loss of consciousness causes through artificial intelligence-enabled decoding of functional connectivity. Neuroimage 2024; 297:120749. [PMID: 39033787 DOI: 10.1016/j.neuroimage.2024.120749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 07/12/2024] [Accepted: 07/18/2024] [Indexed: 07/23/2024] Open
Abstract
Differential diagnosis of acute loss of consciousness (LOC) is crucial due to the need for different therapeutic strategies despite similar clinical presentations among etiologies such as nonconvulsive status epilepticus, metabolic encephalopathy, and benzodiazepine intoxication. While altered functional connectivity (FC) plays a pivotal role in the pathophysiology of LOC, there has been a lack of efforts to develop differential diagnosis artificial intelligence (AI) models that feature the distinctive FC change patterns specific to each LOC cause. Three approaches were applied for extracting features for the AI models: three-dimensional FC adjacency matrices, vectorized FC values, and graph theoretical measurements. Deep learning using convolutional neural networks (CNN) and various machine learning algorithms were implemented to compare classification accuracy using electroencephalography (EEG) data with different epoch sizes. The CNN model using FC adjacency matrices achieved the highest accuracy with an AUC of 0.905, with 20-s epoch data being optimal for classifying the different LOC causes. The high accuracy of the CNN model was maintained in a prospective cohort. Key distinguishing features among the LOC causes were found in the delta and theta brain wave bands. This research advances the understanding of LOC's underlying mechanisms and shows promise for enhancing diagnosis and treatment selection. Moreover, the AI models can provide accurate LOC differentiation with a relatively small amount of EEG data in 20-s epochs, which may be clinically useful.
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Affiliation(s)
- Young-Tak Kim
- Department of Biomedical Sciences, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Hayom Kim
- Department of Neurology, Korea University Anam Hospital, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Mingyeong So
- Department of Neurology, Korea University Anam Hospital, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Jooheon Kong
- Department of Neurology, Korea University Anam Hospital, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Keun-Tae Kim
- Department of Neurology, Korea University Anam Hospital, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Je Hyeong Hong
- Department of Electronic Engineering, Hanyang University, 222, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea
| | - Yunsik Son
- Department of Computer Science and Engineering, Dongguk University, 30, Pildong-ro 1-gil, Jung-gu, Seoul, 04620, Republic of Korea
| | - Jason K Sa
- Department of Biomedical Sciences, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea; Department of Biomedical Informatics, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Synho Do
- Department of Radiology, Massachusetts General Hospital, Harvard Medical School, 125 Nashua Street, Suite 2210, Boston, MA, 02114, United States; KU-KIST Graduate School of Converging Science and Technology, Korea University, 145, Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea; Kempner Institute, Harvard University, 150 Western Avenue, Boston, MA, 02134, United States
| | - Jae-Ho Han
- Department of Brain and Cognitive Engineering, Korea University, 145, Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea
| | - Jung Bin Kim
- Department of Neurology, Korea University Anam Hospital, Korea University College of Medicine, 73, Goryeodae-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea.
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Kumar TS, Maheshwari S, Rajesh KNVPS. Schizophrenia detection using Entropy Difference-based Electroencephalogram Channel Selection Approach. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2024; 2024:1-4. [PMID: 40039910 DOI: 10.1109/embc53108.2024.10782840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
Abstract
In this work, we propose a novel approach for identifying schizophrenia using an entropy difference (ED)- based electroencephalogram (EEG) channel selection algorithm. At the core of our approach is an ED-based channel selection algorithm, which selects the most significant EEG channels that contain discriminative information for schizophrenia detection using entropy difference values. This process not only selects the discriminative channels but also reduces the computational complexity of schizophrenia detection. After selecting the significant channels, we decompose the selected EEG signals into subbands using discrete wavelet transform (DWT). Furthermore, we extract symmetrically-weighted local binary patterns to capture subband variations. The features are then subjected to the support vector machine (SVM) to differentiate individuals with schizophrenia based on their EEG signals. The proposed approach achieves a classification accuracy of 100% when features from only one channel are used, outperforming the existing approaches in schizophrenia detection. Also, the ED-based channel selection approach outperforms the existing entropy-based channel selection approach in schizophrenia detection.
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15
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Shams AM, Jabbari S. A deep learning approach for diagnosis of schizophrenia disorder via data augmentation based on convolutional neural network and long short-term memory. Biomed Eng Lett 2024; 14:663-675. [PMID: 38946814 PMCID: PMC11208387 DOI: 10.1007/s13534-024-00360-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 01/09/2024] [Accepted: 01/30/2024] [Indexed: 07/02/2024] Open
Abstract
Schizophrenia (SZ) is a severe, chronic mental disorder without specific treatment. Due to the increasing prevalence of SZ in societies and the similarity of the characteristics of this disease with other mental illnesses such as bipolar disorder, most people are not aware of having it in their daily lives. Therefore, early detection of this disease will allow the sufferer to seek treatment or at least control it. Previous SZ detection studies through machine learning methods, require the extraction and selection of features before the classification process. This study attempts to develop a novel, end-to-end approach based on a 15-layers convolutional neural network (CNN) and a 16-layers CNN- long short-term memory (LSTM) to help psychiatrists automatically diagnose SZ from electroencephalogram (EEG) signals. The deep model uses CNN layers to learn the temporal properties of the signals, while LSTM layers provide the sequence learning mechanism. Also, data augmentation method based on generative adversarial networks is employed over the training set to increase the diversity of the data. Results on a large EEG dataset show the high diagnostic potential of both proposed methods, achieving remarkable accuracy of 98% and 99%. This study shows that the proposed framework is able to accurately discriminate SZ from healthy subject and is potentially useful for developing diagnostic tools for SZ disorder.
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Affiliation(s)
- Amin Mashayekhi Shams
- Electrical Engineering Department, Engineering Faculty, University of Zanjan, Zanjan, Iran
| | - Sepideh Jabbari
- Electrical Engineering Department, Engineering Faculty, University of Zanjan, Zanjan, Iran
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16
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Phang CR, Su KH, Cheng YY, Chen CH, Ko LW. Time synchronization between parietal-frontocentral connectivity with MRCP and gait in post-stroke bipedal tasks. J Neuroeng Rehabil 2024; 21:101. [PMID: 38872209 PMCID: PMC11170849 DOI: 10.1186/s12984-024-01330-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2023] [Accepted: 06/20/2023] [Indexed: 06/15/2024] Open
Abstract
BACKGROUND In post-stroke rehabilitation, functional connectivity (FC), motor-related cortical potential (MRCP), and gait activities are common measures related to recovery outcomes. However, the interrelationship between FC, MRCP, gait activities, and bipedal distinguishability have yet to be investigated. METHODS Ten participants were equipped with EEG devices and inertial measurement units (IMUs) while performing lower limb motor preparation (MP) and motor execution (ME) tasks. MRCP, FCs, and bipedal distinguishability were extracted from the EEG signals, while the change in knee degree during the ME phase was calculated from the gait data. FCs were analyzed with pairwise Pearson's correlation, and the brain-wide FC was fed into support vector machine (SVM) for bipedal classification. RESULTS Parietal-frontocentral connectivity (PFCC) dysconnection and MRCP desynchronization were related to the MP and ME phases, respectively. Hemiplegic limb movement exhibited higher PFCC strength than nonhemiplegic limb movement. Bipedal classification had a short-lived peak of 75.1% in the pre-movement phase. These results contribute to a better understanding of the neurophysiological functions during motor tasks, with respect to localized MRCP and nonlocalized FC activities. The difference in PFCCs between both limbs could be a marker to understand the motor function of the brain of post-stroke patients. CONCLUSIONS In this study, we discovered that PFCCs are temporally dependent on lower limb gait movement and MRCP. The PFCCs are also related to the lower limb motor performance of post-stroke patients. The detection of motor intentions allows the development of bipedal brain-controlled exoskeletons for lower limb active rehabilitation.
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Affiliation(s)
- Chun-Ren Phang
- International Ph.D. Program in Interdisciplinary Neuroscience (UST), College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan
- Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan
| | - Kai-Hsiang Su
- Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan
- Department of Biological Science and Technology, College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan
| | - Yuan-Yang Cheng
- Department of Physical Medicine and Rehabilitation, Taichung Veterans General Hospital, Taichung, Taiwan
- Department of Post-Baccalaureate Medicine, College of Medicine, National Chung Hsing University, Taichung, Taiwan
- School of Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan
| | - Chia-Hsin Chen
- Department of Physical Medicine and Rehabilitation, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan
- School of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan
- Regenerative Medicine and Cell Therapy Research Center, Kaohsiung Medical University, Kaohsiung, Taiwan
| | - Li-Wei Ko
- International Ph.D. Program in Interdisciplinary Neuroscience (UST), College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
- Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
- Department of Biological Science and Technology, College of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
- Institute of Electrical and Control Engineering, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
- Department of Biomedical Science and Environment Biology, Kaohsiung Medical University, Kaohsiung, Taiwan.
- Drug Development and Value Creation Research Center, Kaohsiung Medical University, Kaohsiung, Taiwan.
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17
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Srinivasan S, Johnson SD. Optimizing feature subset for schizophrenia detection using multichannel EEG signals and rough set theory. Cogn Neurodyn 2024; 18:431-446. [PMID: 38699607 PMCID: PMC11061098 DOI: 10.1007/s11571-023-10011-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 06/06/2023] [Accepted: 09/16/2023] [Indexed: 05/05/2024] Open
Abstract
Schizophrenia (SZ) is a mental disorder that causes lifelong disorders based on delusions, cognitive deficits, and hallucinations. By visual assessment, SZ diagnosis is time-consuming and complicated, because brain states are more effectively revealed by electroencephalogram (EEG) signals, which are effectively used in SZ diagnosis. The application of existing deep learning methods in SZ detection is effective in the classification of 2-dimensional images, and these methods require more computational resources. Therefore, dimensionality reduction is necessary for SZ diagnosis using EEG signals. To reduce the dimensionality of the data, an improved CAO (ICAO) dimensionality reduction method is proposed, which integrates horizontal and vertical crossover approaches with AOA. The optimal feature subset is achieved by satisfying the ICAO conditions, and a fitness function is evaluated based on rough sets for improved accuracy in feature selection. Therefore a Crossover-boosted Archimedes optimization algorithm (AOA) with rough sets for Schizophrenia detection (CAORS-SD) was proposed using multichannel EEG signals from both SZ and normal patients. The signals are decomposed using multivariate empirical mode decomposition into multivariate intrinsic mode functions (MIMFs). Entropy metrics such as spectral entropy, permutation entropy, approximate entropy, sample entropy, and SVD entropy are evaluated on the MIMF domain to detect SZ. The processing time of the kernel support vector machine classifier is minimized with fewer features, reducing the risk Fof overfitting. Accuracy, sensitivity, specificity, precision, and F1-score of the CAORS-SD model should be conducted to diagnose SZ. Therefore, the proposed CAORS-SD method achieves the higher performance of accuracy, sensitivity, specificity, precision, and F1-score values of 96.34, 98.95, 96.86, 98.52, and 96.74% respectively. Also, the CAORS-SD method minimizes the error rate and significantly reduces the execution time.
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Affiliation(s)
- Sridevi Srinivasan
- Department of Computer Science and Engineering, SRM Institute of Science and Technology, Ramapuram, Chennai, India
| | - Shiny Duela Johnson
- Department of Computer Science and Engineering, SRM Institute of Science and Technology, Ramapuram, Chennai, India
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18
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Adebisi AT, Lee HW, Veluvolu KC. EEG-Based Brain Functional Network Analysis for Differential Identification of Dementia-Related Disorders and Their Onset. IEEE Trans Neural Syst Rehabil Eng 2024; 32:1198-1209. [PMID: 38451768 DOI: 10.1109/tnsre.2024.3374651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2024]
Abstract
Diagnosing and treating dementia, including mild cognitive impairment (MCI), is challenging due to diverse disease types and overlapping symptoms. Early MCI detection is vital as it can precede dementia, yet distinguishing it from later stage dementia is intricate due to subtle symptoms. The primary objective of this study is to adopt a complex network perspective to unravel the underlying pathophysiological mechanisms of dementia-related disorders. Leveraging the extensive availability of electroencephalogram (EEG) data, our study focuses on the meticulous identification and analysis of EEG-based brain functional network (BFNs) associated with dementia-related disorders. To achieve this, we employ the Phase Lag Index (PLI) as a connectivity measure, offering a comprehensive view of neural interactions. To enhance the analytical rigor, we introduce a data-driven threshold selection technique. This innovative approach allows us to compare the topological structures of the formulated BFNs using complex network measures quantitatively and statistically. Furthermore, we harness the power of these BFNs by utilizing them as pre-defined graph inputs for a Graph Convolution Network (GCN-net) based approach. The results demonstrate that graph theory metrics, such as the rich-club coefficient, transitivity, and assortativity coefficients, effectively distinguish between MCI, Alzheimer's disease (AD) and vascular dementia (VD). Furthermore, GCN-net achieves high accuracy (95.07% delta, 80.62% theta) and F1-scores (0.92 delta, 0.67 theta), highlighting the effectiveness of EEG-based BFNs in the analysis of dementia-related disorders.
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19
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Aksoy G, Cattan G, Chakraborty S, Karabatak M. Quantum Machine-Based Decision Support System for the Detection of Schizophrenia from EEG Records. J Med Syst 2024; 48:29. [PMID: 38441727 PMCID: PMC10914922 DOI: 10.1007/s10916-024-02048-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 02/18/2024] [Indexed: 03/07/2024]
Abstract
Schizophrenia is a serious chronic mental disorder that significantly affects daily life. Electroencephalography (EEG), a method used to measure mental activities in the brain, is among the techniques employed in the diagnosis of schizophrenia. The symptoms of the disease typically begin in childhood and become more pronounced as one grows older. However, it can be managed with specific treatments. Computer-aided methods can be used to achieve an early diagnosis of this illness. In this study, various machine learning algorithms and the emerging technology of quantum-based machine learning algorithm were used to detect schizophrenia using EEG signals. The principal component analysis (PCA) method was applied to process the obtained data in quantum systems. The data, which were reduced in dimensionality, were transformed into qubit form using various feature maps and provided as input to the Quantum Support Vector Machine (QSVM) algorithm. Thus, the QSVM algorithm was applied using different qubit numbers and different circuits in addition to classical machine learning algorithms. All analyses were conducted in the simulator environment of the IBM Quantum Platform. In the classification of this EEG dataset, it is evident that the QSVM algorithm demonstrated superior performance with a 100% success rate when using Pauli X and Pauli Z feature maps. This study serves as proof that quantum machine learning algorithms can be effectively utilized in the field of healthcare.
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Affiliation(s)
- Gamzepelin Aksoy
- Department of Software Engineering, Firat University, Elazig, Türkiye.
| | | | - Subrata Chakraborty
- School of Science and Technology, Faculty of Science, Agriculture, Business and Law, University of New England, Armidale, NSW, 2351, Australia
- Centre for Advanced Modelling and Geospatial Information Systems (CAMGIS), School of Civil and Environmental Engineering, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia
- Griffith Business School, Griffith University, Brisbane, QLD, 4111, Australia
| | - Murat Karabatak
- Department of Software Engineering, Firat University, Elazig, Türkiye
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20
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Rahul J, Sharma D, Sharma LD, Nanda U, Sarkar AK. A systematic review of EEG based automated schizophrenia classification through machine learning and deep learning. Front Hum Neurosci 2024; 18:1347082. [PMID: 38419961 PMCID: PMC10899326 DOI: 10.3389/fnhum.2024.1347082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 01/26/2024] [Indexed: 03/02/2024] Open
Abstract
The electroencephalogram (EEG) serves as an essential tool in exploring brain activity and holds particular importance in the field of mental health research. This review paper examines the application of artificial intelligence (AI), encompassing machine learning (ML) and deep learning (DL), for classifying schizophrenia (SCZ) through EEG. It includes a thorough literature review that addresses the difficulties, methodologies, and discoveries in this field. ML approaches utilize conventional models like Support Vector Machines and Decision Trees, which are interpretable and effective with smaller data sets. In contrast, DL techniques, which use neural networks such as convolutional neural networks (CNNs) and long short-term memory networks (LSTMs), are more adaptable to intricate EEG patterns but require significant data and computational power. Both ML and DL face challenges concerning data quality and ethical issues. This paper underscores the importance of integrating various techniques to enhance schizophrenia diagnosis and highlights AI's potential role in this process. It also acknowledges the necessity for collaborative and ethically informed approaches in the automated classification of SCZ using AI.
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Affiliation(s)
- Jagdeep Rahul
- Department of Electronics and Communication Engineering, Rajiv Gandhi University, Arunachal Pradesh, India
| | - Diksha Sharma
- Department of Electronics and Communication, Indian Institute of Information Technology, Sri City, India
| | - Lakhan Dev Sharma
- School of Electronics Engineering, VIT-AP University, Amrawati, India
| | - Umakanta Nanda
- School of Electronics Engineering, VIT-AP University, Amrawati, India
| | - Achintya Kumar Sarkar
- Department of Electronics and Communication, Indian Institute of Information Technology, Sri City, India
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21
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Kaposzta Z, Czoch A, Mukli P, Stylianou O, Liu DH, Eke A, Racz FS. Fingerprints of decreased cognitive performance on fractal connectivity dynamics in healthy aging. GeroScience 2024; 46:713-736. [PMID: 38117421 PMCID: PMC10828149 DOI: 10.1007/s11357-023-01022-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 11/19/2023] [Indexed: 12/21/2023] Open
Abstract
Analysis of brain functional connectivity (FC) could provide insight in how and why cognitive functions decline even in healthy aging (HA). Despite FC being established as fluctuating over time even in the resting state (RS), dynamic functional connectivity (DFC) studies involving healthy elderly individuals and assessing how these patterns relate to cognitive performance are yet scarce. In our recent study we showed that fractal temporal scaling of functional connections in RS is not only reduced in HA, but also predicts increased response latency and reduced task solving accuracy. However, in that work we did not address changes in the dynamics of fractal connectivity (FrC) strength itself and its plausible relationship with mental capabilities. Therefore, here we analyzed RS electroencephalography recordings of the same subject cohort as previously, consisting of 24 young and 19 healthy elderly individuals, who also completed 7 different cognitive tasks after data collection. Dynamic fractal connectivity (dFrC) analysis was carried out via sliding-window detrended cross-correlation analysis (DCCA). A machine learning method based on recursive feature elimination was employed to select the subset of connections most discriminative between the two age groups, identifying 56 connections that allowed for classifying participants with an accuracy surpassing 92%. Mean of DCCA was found generally increased, while temporal variability of FrC decreased in the elderly when compared to the young group. Finally, dFrC indices expressed an elaborate pattern of associations-assessed via Spearman correlation-with cognitive performance scores in both groups, linking fractal connectivity strength and variance to increased response latency and reduced accuracy in the elderly population. Our results provide further support for the relevance of FrC dynamics in understanding age-related cognitive decline and might help to identify potential targets for future intervention strategies.
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Affiliation(s)
- Zalan Kaposzta
- Department of Physiology, Semmelweis University, 37-47 Tuzolto Street, Budapest, 1094, Hungary
| | - Akos Czoch
- Department of Physiology, Semmelweis University, 37-47 Tuzolto Street, Budapest, 1094, Hungary
| | - Peter Mukli
- Department of Physiology, Semmelweis University, 37-47 Tuzolto Street, Budapest, 1094, Hungary
- Oklahoma Center for Geroscience and Healthy Brain Aging, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA
- Vascular Cognitive Impairment and Neurodegeneration Program, Department of Neurosurgery, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA
- International Training Program in Geroscience, Doctoral School of Basic and Translational Medicine/Department of Public Health, Semmelweis University, Budapest, Hungary
| | - Orestis Stylianou
- Department of Physiology, Semmelweis University, 37-47 Tuzolto Street, Budapest, 1094, Hungary
- Institute of Translational Medicine, Semmelweis University, Budapest, Hungary
- Berlin Institute of Health at Charité, University Hospital Berlin, Charitéplatz 1, 10117, Berlin, Germany
- Department of Neurology with Experimental Neurology, Charité-University Hospital Berlin, Corporate Member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany
| | - Deland Hu Liu
- Chandra Department of Electrical and Computer Engineering, Cockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA
| | - Andras Eke
- Department of Physiology, Semmelweis University, 37-47 Tuzolto Street, Budapest, 1094, Hungary
- Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA
| | - Frigyes Samuel Racz
- Department of Physiology, Semmelweis University, 37-47 Tuzolto Street, Budapest, 1094, Hungary.
- Department of Neurology, Dell Medical School, The University of Texas at Austin, 1601 Trinity St, Austin, TX, 78712, USA.
- Mulva Clinic for the Neurosciences, Dell Medical School, The University of Texas at Austin, Austin, TX, USA.
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22
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Udayakumar P, Subhashini R. Connectome-based schizophrenia prediction using structural connectivity - Deep Graph Neural Network(sc-DGNN). JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2024; 32:1041-1059. [PMID: 38820060 DOI: 10.3233/xst-230426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2024]
Abstract
BACKGROUND Connectome is understanding the complex organization of the human brain's structural and functional connectivity is essential for gaining insights into cognitive processes and disorders. OBJECTIVE To improve the prediction accuracy of brain disorder issues, the current study investigates dysconnected subnetworks and graph structures associated with schizophrenia. METHOD By using the proposed structural connectivity-deep graph neural network (sc-DGNN) model and compared with machine learning (ML) and deep learning (DL) models.This work attempts to focus on eighty-eight subjects of diffusion magnetic resonance imaging (dMRI), three classical ML, and five DL models. RESULT The structural connectivity-deep graph neural network (sc-DGNN) model is proposed to effectively predict dysconnectedness associated with schizophrenia and exhibits superior performance compared to traditional ML and DL (GNNs) methods in terms of accuracy, sensitivity, specificity, precision, F1-score, and Area under receiver operating characteristic (AUC). CONCLUSION The classification task on schizophrenia using structural connectivity matrices and experimental results showed that linear discriminant analysis (LDA) performed 72% accuracy rate in ML models and sc-DGNN performed at a 93% accuracy rate in DL models to distinguish between schizophrenia and healthy patients.
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Affiliation(s)
- P Udayakumar
- School of Computer Science Engineering and Information Systems, Vellore Institute of Technology, Vellore, India
| | - R Subhashini
- School of Computer Science Engineering and Information Systems, Vellore Institute of Technology, Vellore, India
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23
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Parsa M, Rad HY, Vaezi H, Hossein-Zadeh GA, Setarehdan SK, Rostami R, Rostami H, Vahabie AH. EEG-based classification of individuals with neuropsychiatric disorders using deep neural networks: A systematic review of current status and future directions. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 240:107683. [PMID: 37406421 DOI: 10.1016/j.cmpb.2023.107683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Revised: 05/23/2023] [Accepted: 06/18/2023] [Indexed: 07/07/2023]
Abstract
The use of deep neural networks for electroencephalogram (EEG) classification has rapidly progressed and gained popularity in recent years, but automatic feature extraction from EEG signals remains a challenging task. The classification of neuropsychiatric disorders demands the extraction of neuro-markers for use in automated EEG classification. Numerous advanced deep learning algorithms can be used for this purpose. In this article, we present a comprehensive review of the main factors and parameters that affect the performance of deep neural networks in classifying different neuropsychiatric disorders using EEG signals. We also analyze the EEG features used for improving classification performance. Our analysis includes 82 scientific journal papers that applied deep neural networks for subject-wise classification based on EEG signals. We extracted information on the EEG dataset and types of disorders, deep neural network structures, performance, and hyperparameters. The results show that most studies have focused on clinical classification, achieving an average accuracy of 91.83 ± 7.34, with convolutional neural networks (CNNs) being the most frequently used network architecture and resting-state EEG signals being the most commonly used data type. Additionally, the review reveals that depression (N = 18), Alzheimer's (N = 11), and schizophrenia (N = 11) were studied more frequently than other types of neuropsychiatric disorders. Our review provides insight into the performance of deep neural networks in EEG classification and highlights the importance of EEG feature extraction in improving classification accuracy. By identifying the main factors and parameters that affect deep neural network performance in EEG classification, our review can guide future research in this area. We hope that our findings will encourage further exploration of deep learning methods for EEG classification and contribute to the development of more accurate and effective methods for diagnosing and monitoring neuropsychiatric disorders using EEG signals.
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Affiliation(s)
- Mohsen Parsa
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Artesh Highway, P.O. Box 19568-36484, Tehran, Iran
| | - Habib Yousefi Rad
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Artesh Highway, P.O. Box 19568-36484, Tehran, Iran
| | - Hadi Vaezi
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Artesh Highway, P.O. Box 19568-36484, Tehran, Iran
| | - Gholam-Ali Hossein-Zadeh
- Control and Intelligent Processing Center of Excellence, Faculty of Electrical and Computer Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran
| | - Seyed Kamaledin Setarehdan
- Control and Intelligent Processing Center of Excellence, Faculty of Electrical and Computer Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran
| | - Reza Rostami
- Faculty of Psychology and Education, University of Tehran, Jalal-Al-e-Ahmed, P.O. Box 14155-6456, Tehran, Iran
| | - Hana Rostami
- ACNC, Atieh Clinical Neuroscience Center, Valiasr St., P.O. Box 19697-13663, Tehran, Iran
| | - Abdol-Hossein Vahabie
- Faculty of Psychology and Education, University of Tehran, Jalal-Al-e-Ahmed, P.O. Box 14155-6456, Tehran, Iran; Cognitive Systems Laboratory, Control and Intelligent Processing Center of Excellence (CIPCE), School of Electrical and Computer Engineering, College of Engineering, University of Tehran, P.O. Box 14395/515, Tehran, Iran; Pasargad Institute for Advanced Innovative Solutions (PIAIS), Tehran, Iran.
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Gashkarimov VR, Sultanova RI, Efremov IS, Asadullin AR. Machine learning techniques in diagnostics and prediction of the clinical features of schizophrenia: a narrative review. CONSORTIUM PSYCHIATRICUM 2023; 4:43-53. [PMID: 38249535 PMCID: PMC10795943 DOI: 10.17816/cp11030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 08/07/2023] [Indexed: 01/23/2024] Open
Abstract
BACKGROUND Schizophrenia is a severe psychiatric disorder associated with a significant negative impact. Early diagnosis and treatment of schizophrenia has a favorable effect on the clinical outcome and patients quality of life. In this context, machine learning techniques open up new opportunities for a more accurate diagnosis and prediction of the clinical features of this illness. AIM This literature review is aimed to search for information on the use of machine learning techniques in the prediction and diagnosis of schizophrenia and the determination of its clinical features. METHODS The Google Scholar, PubMed, and eLIBRARY.ru databases were used to search for relevant data. The review included articles that had been published not earlier than January 1, 2010, and not later than March 31, 2023. Combinations of the following keywords were applied for search queries: machine learning, deep learning, schizophrenia, neural network, predictors, artificial intelligence, diagnostics, suicide, depressive, insomnia, and cognitive. Original articles regardless of their design were included in the review. Descriptive analysis was used to summarize the retrieved data. RESULTS Machine learning techniques are widely used in the functional assessment of patients with schizophrenia. They are used for interpretation of MRI, EEG, and actigraphy findings. Also, models created using machine learning algorithms can analyze speech, behavior, and the creativity of people and these data can be used for the diagnosis of psychiatric disorders. It has been found that different machine learning-based models can help specialists predict and diagnose schizophrenia based on medical history and genetic data, as well as epigenetic information. Machine learning techniques can also be used to build effective models that can help specialists diagnose and predict clinical manifestations and complications of schizophrenia, such as insomnia, depressive symptoms, suicide risk, aggressive behavior, and changes in cognitive functions over time. CONCLUSION Machine learning techniques play an important role in psychiatry, as they have been used in models that help specialists in the diagnosis of schizophrenia and determination of its clinical features. The use of machine learning algorithms is one of the most promising direction in psychiatry, and it can significantly improve the effectiveness of the diagnosis and treatment of schizophrenia.
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Affiliation(s)
| | - Renata I Sultanova
- Moscow Research and Clinical Center for Neuropsychiatry of Moscow Healthcare Department
| | - Ilya S Efremov
- Bashkir State Medical University
- V.M. Bekhterev National Medical Research Centre for Psychiatry and Neurology
| | - Azat R Asadullin
- Bashkir State Medical University
- V.M. Bekhterev National Medical Research Centre for Psychiatry and Neurology
- Republican Clinical Psychotherapeutic Center
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25
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Perellón-Alfonso R, Oblak A, Kuclar M, Škrlj B, Pileckyte I, Škodlar B, Pregelj P, Abellaneda-Pérez K, Bartrés-Faz D, Repovš G, Bon J. Dense attention network identifies EEG abnormalities during working memory performance of patients with schizophrenia. Front Psychiatry 2023; 14:1205119. [PMID: 37817830 PMCID: PMC10560761 DOI: 10.3389/fpsyt.2023.1205119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 09/04/2023] [Indexed: 10/12/2023] Open
Abstract
Introduction Patients with schizophrenia typically exhibit deficits in working memory (WM) associated with abnormalities in brain activity. Alterations in the encoding, maintenance and retrieval phases of sequential WM tasks are well established. However, due to the heterogeneity of symptoms and complexity of its neurophysiological underpinnings, differential diagnosis remains a challenge. We conducted an electroencephalographic (EEG) study during a visual WM task in fifteen schizophrenia patients and fifteen healthy controls. We hypothesized that EEG abnormalities during the task could be identified, and patients successfully classified by an interpretable machine learning algorithm. Methods We tested a custom dense attention network (DAN) machine learning model to discriminate patients from control subjects and compared its performance with simpler and more commonly used machine learning models. Additionally, we analyzed behavioral performance, event-related EEG potentials, and time-frequency representations of the evoked responses to further characterize abnormalities in patients during WM. Results The DAN model was significantly accurate in discriminating patients from healthy controls, ACC = 0.69, SD = 0.05. There were no significant differences between groups, conditions, or their interaction in behavioral performance or event-related potentials. However, patients showed significantly lower alpha suppression in the task preparation, memory encoding, maintenance, and retrieval phases F(1,28) = 5.93, p = 0.022, η2 = 0.149. Further analysis revealed that the two highest peaks in the attention value vector of the DAN model overlapped in time with the preparation and memory retrieval phases, as well as with two of the four significant time-frequency ROIs. Discussion These results highlight the potential utility of interpretable machine learning algorithms as an aid in diagnosis of schizophrenia and other psychiatric disorders presenting oscillatory abnormalities.
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Affiliation(s)
- Ruben Perellón-Alfonso
- Faculty of Medicine and Health Sciences, and Institute of Neurosciences, University of Barcelona, Barcelona, Spain
- Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Barcelona, Spain
| | - Aleš Oblak
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
| | - Matija Kuclar
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
| | - Blaž Škrlj
- Jožef Stefan Institute, Ljubljana, Slovenia
| | - Indre Pileckyte
- Center for Brain and Cognition, Pompeu Fabra University, Barcelona, Spain
| | - Borut Škodlar
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
| | - Peter Pregelj
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
| | - Kilian Abellaneda-Pérez
- Faculty of Medicine and Health Sciences, and Institute of Neurosciences, University of Barcelona, Barcelona, Spain
- Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Barcelona, Spain
- Institut Guttmann, Institut Universitari de Neurorehabilitació Adscrit a la UAB, Barcelona, Spain
| | - David Bartrés-Faz
- Faculty of Medicine and Health Sciences, and Institute of Neurosciences, University of Barcelona, Barcelona, Spain
- Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Barcelona, Spain
| | - Grega Repovš
- Department of Psychology, Faculty of Arts, University of Ljubljana, Ljubljana, Slovenia
| | - Jurij Bon
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
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26
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Sadat Shahabi M, Nobakhsh B, Shalbaf A, Rostami R, Kazemi R. Prediction of treatment outcome for repetitive transcranial magnetic stimulation in major depressive disorder using connectivity measures and ensemble of pre-trained deep learning models. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
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27
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Shen M, Wen P, Song B, Li Y. Automatic identification of schizophrenia based on EEG signals using dynamic functional connectivity analysis and 3D convolutional neural network. Comput Biol Med 2023; 160:107022. [PMID: 37187135 DOI: 10.1016/j.compbiomed.2023.107022] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 04/21/2023] [Accepted: 05/09/2023] [Indexed: 05/17/2023]
Abstract
Schizophrenia (ScZ) is a devastating mental disorder of the human brain that causes a serious impact of emotional inclinations, quality of personal and social life and healthcare systems. In recent years, deep learning methods with connectivity analysis only very recently focused into fMRI data. To explore this kind of research into electroencephalogram (EEG) signal, this paper investigates the identification of ScZ EEG signals using dynamic functional connectivity analysis and deep learning methods. A time-frequency domain functional connectivity analysis through cross mutual information algorithm is proposed to extract the features in alpha band (8-12 Hz) of each subject. A 3D convolutional neural network technique was applied to classify the ScZ subjects and health control (HC) subjects. The LMSU public ScZ EEG dataset is employed to evaluate the proposed method, and a 97.74 ± 1.15% accuracy, 96.91 ± 2.76% sensitivity and 98.53 ± 1.97% specificity results were achieved in this study. In addition, we also found not only the default mode network region but also the connectivity between temporal lobe and posterior temporal lobe in both right and left side have significant difference between the ScZ and HC subjects.
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Affiliation(s)
- Mingkan Shen
- School of Engineering, University of Southern Queensland, Toowoomba, Australia.
| | - Peng Wen
- School of Engineering, University of Southern Queensland, Toowoomba, Australia
| | - Bo Song
- School of Engineering, University of Southern Queensland, Toowoomba, Australia
| | - Yan Li
- School of Mathematics, Physics and Computing, University of Southern Queensland, Toowoomba, Australia
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28
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Chen X, Ke P, Huang Y, Zhou J, Li H, Peng R, Huang J, Liang L, Ma G, Li X, Ning Y, Wu F, Wu K. Discriminative analysis of schizophrenia patients using graph convolutional networks: A combined multimodal MRI and connectomics analysis. Front Neurosci 2023; 17:1140801. [PMID: 37090813 PMCID: PMC10117439 DOI: 10.3389/fnins.2023.1140801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 03/10/2023] [Indexed: 03/31/2023] Open
Abstract
INTRODUCTION Recent studies in human brain connectomics with multimodal magnetic resonance imaging (MRI) data have widely reported abnormalities in brain structure, function and connectivity associated with schizophrenia (SZ). However, most previous discriminative studies of SZ patients were based on MRI features of brain regions, ignoring the complex relationships within brain networks. METHODS We applied a graph convolutional network (GCN) to discriminating SZ patients using the features of brain region and connectivity derived from a combined multimodal MRI and connectomics analysis. Structural magnetic resonance imaging (sMRI) and resting-state functional magnetic resonance imaging (rs-fMRI) data were acquired from 140 SZ patients and 205 normal controls. Eighteen types of brain graphs were constructed for each subject using 3 types of node features, 3 types of edge features, and 2 brain atlases. We investigated the performance of 18 brain graphs and used the TopK pooling layers to highlight salient brain regions (nodes in the graph). RESULTS The GCN model, which used functional connectivity as edge features and multimodal features (sMRI + fMRI) of brain regions as node features, obtained the highest average accuracy of 95.8%, and outperformed other existing classification studies in SZ patients. In the explainability analysis, we reported that the top 10 salient brain regions, predominantly distributed in the prefrontal and occipital cortices, were mainly involved in the systems of emotion and visual processing. DISCUSSION Our findings demonstrated that GCN with a combined multimodal MRI and connectomics analysis can effectively improve the classification of SZ at an individual level, indicating a promising direction for the diagnosis of SZ patients. The code is available at https://github.com/CXY-scut/GCN-SZ.git.
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Affiliation(s)
- Xiaoyi Chen
- Department of Biomedical Engineering, School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou International Campus, Guangzhou, China
| | - Pengfei Ke
- Department of Biomedical Engineering, School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou International Campus, Guangzhou, China
| | - Yuanyuan Huang
- Department of Emotional Disorders, The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou, China
- Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China
| | - Jing Zhou
- School of Material Science and Engineering, South China University of Technology, Guangzhou, China
- National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
- Guangdong Province Key Laboratory of Biomedical Engineering, South China University of Technology, Guangzhou, China
| | - Hehua Li
- Department of Emotional Disorders, The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou, China
- Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China
| | - Runlin Peng
- Department of Biomedical Engineering, School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou International Campus, Guangzhou, China
| | - Jiayuan Huang
- Department of Biomedical Engineering, School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou International Campus, Guangzhou, China
| | - Liqin Liang
- Department of Biomedical Engineering, School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou International Campus, Guangzhou, China
| | - Guolin Ma
- Department of Radiology, China-Japan Friendship Hospital, Beijing, China
| | - Xiaobo Li
- Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ, United States
| | - Yuping Ning
- Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou, China
- Department of Psychosomatic, The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou, China
| | - Fengchun Wu
- Department of Psychiatry, The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou, China
| | - Kai Wu
- Department of Biomedical Engineering, School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou International Campus, Guangzhou, China
- National Engineering Research Center for Tissue Restoration and Reconstruction, South China University of Technology, Guangzhou, China
- Guangdong Province Key Laboratory of Biomedical Engineering, South China University of Technology, Guangzhou, China
- Department of Nuclear Medicine and Radiology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan
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29
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Khare SK, Bajaj V, Acharya UR. SchizoNET: a robust and accurate Margenau-Hill time-frequency distribution based deep neural network model for schizophrenia detection using EEG signals. Physiol Meas 2023; 44. [PMID: 36787641 DOI: 10.1088/1361-6579/acbc06] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 02/14/2023] [Indexed: 02/16/2023]
Abstract
Objective.Schizophrenia (SZ) is a severe chronic illness characterized by delusions, cognitive dysfunctions, and hallucinations that impact feelings, behaviour, and thinking. Timely detection and treatment of SZ are necessary to avoid long-term consequences. Electroencephalogram (EEG) signals are one form of a biomarker that can reveal hidden changes in the brain during SZ. However, the EEG signals are non-stationary in nature with low amplitude. Therefore, extracting the hidden information from the EEG signals is challenging.Approach.The time-frequency domain is crucial for the automatic detection of SZ. Therefore, this paper presents the SchizoNET model combining the Margenau-Hill time-frequency distribution (MH-TFD) and convolutional neural network (CNN). The instantaneous information of EEG signals is captured in the time-frequency domain using MH-TFD. The time-frequency amplitude is converted to two-dimensional plots and fed to the developed CNN model.Results.The SchizoNET model is developed using three different validation techniques, including holdout, five-fold cross-validation, and ten-fold cross-validation techniques using three separate public SZ datasets (Dataset 1, 2, and 3). The proposed model achieved an accuracy of 97.4%, 99.74%, and 96.35% on Dataset 1 (adolescents: 45 SZ and 39 HC subjects), Dataset 2 (adults: 14 SZ and 14 HC subjects), and Dataset 3 (adults: 49 SZ and 32 HC subjects), respectively. We have also evaluated six performance parameters and the area under the curve to evaluate the performance of our developed model.Significance.The SchizoNET is robust, effective, and accurate, as it performed better than the state-of-the-art techniques. To the best of our knowledge, this is the first work to explore three publicly available EEG datasets for the automated detection of SZ. Our SchizoNET model can help neurologists detect the SZ in various scenarios.
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Affiliation(s)
- Smith K Khare
- Electrical and Computer Engineering Department, Aarhus University, Denmark
| | - Varun Bajaj
- Discipline of Electronics and Communication Engineering, Indian Institute of Information Technology, Design, and Manufacturing (IIITDM) Jabalpur, India
| | - U Rajendra Acharya
- School of Mathematics, Physics, and Computing, University of Southern Queensland, Springfield, Australia.,Department of Biomedical Engineering, School of Science and Technology, University of Social Sciences, Singapore.,Department of Biomedical Informatics and Medical Engineering, Asia University, Taiwan.,Distinguished Professor, Kumamoto University, Japan.,Adjunct Professor, University of Malaya, Malaysia
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30
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Yu R, Pan C, Fei X, Chen M, Shen D. Multi-Graph Attention Networks With Bilinear Convolution for Diagnosis of Schizophrenia. IEEE J Biomed Health Inform 2023; 27:1443-1454. [PMID: 37018590 DOI: 10.1109/jbhi.2022.3229465] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
The explorations of brain functional connectivity (FC) network using resting-state functional magnetic resonance imaging (rs-fMRI) can provide crucial insights into discriminative analysis of neuropsychiatric disorders such as schizophrenia (SZ). Graph attention network (GAT), which could capture the local stationary on the network topology and aggregate the features of neighboring nodes, has advantages in learning the feature representation of brain regions. However, GAT only can obtain the node-level features that reflect local information, ignoring the spatial information within the connectivity-based features that proved to be important for SZ diagnosis. In addition, existing graph learning techniques usually rely on a single graph topology to represent neighborhood information, and only consider a single correlation measure for connectivity features. Comprehensive analysis of multiple graph topologies and multiple measures of FC can leverage their complementary information that may contribute to identifying patients. In this paper, we propose a multi-graph attention network (MGAT) with bilinear convolution (BC) neural network framework for SZ diagnosis and functional connectivity analysis. Besides multiple correlation measures to construct connectivity networks from different perspectives, we further propose two different graph construction methods to capture both the low- and high-level graph topologies, respectively. Especially, the MGAT module is developed to learn multiple node interaction features on each graph topology, and the BC module is utilized to learn the spatial connectivity features of the brain network for disease prediction. Importantly, the rationality and advantages of our proposed method can be validated by the experiments on SZ identification. Therefore, we speculate that this framework may also be potentially used as a diagnostic tool for other neuropsychiatric disorders.
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31
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Shah SJH, Albishri A, Kang SS, Lee Y, Sponheim SR, Shim M. ETSNet: A deep neural network for EEG-based temporal-spatial pattern recognition in psychiatric disorder and emotional distress classification. Comput Biol Med 2023; 158:106857. [PMID: 37044046 DOI: 10.1016/j.compbiomed.2023.106857] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 03/06/2023] [Accepted: 03/30/2023] [Indexed: 04/03/2023]
Abstract
The use of EEG for evaluating and diagnosing neurological abnormalities related to psychiatric diseases and identifying human emotions has been improved by deep learning advancements. This research aims to categorize individuals with schizophrenia (SZ), their biological relatives (REL), and healthy controls (HC) using resting EEG brain source signal data defined by regions of interest (ROIs). The proposed solution is a deep neural network for the cortical source signals of the ROIs, incorporating a Squeeze-and-Excitation Block and multiple CNNs designed for eyes-open and closed resting states. The model, called EEG Temporal Spatial Network (ETSNet), has two variants: ETSNets and ETSNetf. Two evaluations were conducted to show the effectiveness of the proposed model. The average accuracy for the classification of SZ, REL, and HC using EEG resting data was 99.57% (ETSNetf), and the average accuracy for the classification of eyes-open (EO) and eyes-closed (EC) resting states was 93.15% (ETSNets). An ablation study was also conducted using two public datasets for intellectual and developmental disorders and emotional states, showing improved classification accuracy compared to advanced EEG classification algorithms when using ETSNets.
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32
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Artificial intelligence system for verification of schizophrenia via theta-EEG rhythm. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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33
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Grover N, Chharia A, Upadhyay R, Longo L. Schizo-Net: A novel Schizophrenia Diagnosis Framework Using Late Fusion Multimodal Deep Learning on Electroencephalogram-Based Brain Connectivity Indices. IEEE Trans Neural Syst Rehabil Eng 2023; 31:464-473. [PMID: 37022027 DOI: 10.1109/tnsre.2023.3237375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Schizophrenia (SCZ) is a serious mental condition that causes hallucinations, delusions, and disordered thinking. Traditionally, SCZ diagnosis involves the subject's interview by a skilled psychiatrist. The process needs time and is bound to human errors and bias. Recently, brain connectivity indices have been used in a few pattern recognition methods to discriminate neuro-psychiatric patients from healthy subjects. The study presents $\textit {Schizo-Net}$ , a novel, highly accurate, and reliable SCZ diagnosis model based on a late multimodal fusion of estimated brain connectivity indices from EEG activity. First, the raw EEG activity is pre-processed exhaustively to remove unwanted artifacts. Next, six brain connectivity indices are estimated from the windowed EEG activity, and six different deep learning architectures (with varying neurons and hidden layers) are trained. The present study is the $\textit {first}$ which considers a large number of brain connectivity indices, especially for SCZ. A detailed study was also performed that identifies SCZ-related changes occurring in brain connectivity, and the vital significance of BCI is drawn in this regard to identify the biomarkers of the disease. $\textit {Schizo-Net}$ surpasses current models and achieves 99.84% accuracy. An optimum deep learning architecture selection is also performed for improved classification. The study also establishes that Late fusion technique outperforms single architecture-based prediction in diagnosing SCZ.
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Shahabi MS, Shalbaf A, Nobakhsh B, Rostami R, Kazemi R. Attention-Based Convolutional Recurrent Deep Neural Networks for the Prediction of Response to Repetitive Transcranial Magnetic Stimulation for Major Depressive Disorder. Int J Neural Syst 2023; 33:2350007. [PMID: 36641543 DOI: 10.1142/s0129065723500077] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Repetitive Transcranial Magnetic Stimulation (rTMS) is proposed as an effective treatment for major depressive disorder (MDD). However, because of the suboptimal treatment outcome of rTMS, the prediction of response to this technique is a crucial task. We developed a deep learning (DL) model to classify responders (R) and non-responders (NR). With this aim, we assessed the pre-treatment EEG signal of 34 MDD patients and extracted effective connectivity (EC) among all electrodes in four frequency bands of EEG signal. Two-dimensional EC maps are put together to create a rich connectivity image and a sequence of these images is fed to the DL model. Then, the DL framework was constructed based on transfer learning (TL) models which are pre-trained convolutional neural networks (CNN) named VGG16, Xception, and EfficientNetB0. Then, long short-term memory (LSTM) cells are equipped with an attention mechanism added on top of TL models to fully exploit the spatiotemporal information of EEG signal. Using leave-one subject out cross validation (LOSO CV), Xception-BLSTM-Attention acquired the highest performance with 98.86% of accuracy and 97.73% of specificity. Fusion of these models as an ensemble model based on optimized majority voting gained 99.32% accuracy and 98.34% of specificity. Therefore, the ensemble of TL-LSTM-Attention models can predict accurately the treatment outcome.
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Affiliation(s)
- Mohsen Sadat Shahabi
- Department of Biomedical Engineering and Medical Physics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Ahmad Shalbaf
- Department of Biomedical Engineering and Medical Physics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Behrooz Nobakhsh
- Department of Biomedical Engineering and Medical Physics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Reza Rostami
- Department of Psychology, University of Tehran, Tehran, Iran
| | - Reza Kazemi
- Department of Cognitive Psychology, Institute for Cognitive Science Studies, Tehran, Iran
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35
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Balasubramanian K, Ramya K, Gayathri Devi K. Optimized adaptive neuro-fuzzy inference system based on hybrid grey wolf-bat algorithm for schizophrenia recognition from EEG signals. Cogn Neurodyn 2023; 17:133-151. [PMID: 36704627 PMCID: PMC9871147 DOI: 10.1007/s11571-022-09817-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 03/23/2022] [Accepted: 04/27/2022] [Indexed: 02/01/2023] Open
Abstract
Schizophrenia is a chronic mental disorder that impairs a person's thinking capacity, feelings and emotions, behavioural traits, etc., Emotional distortions, delusions, hallucinations, and incoherent speech are all some of the symptoms of schizophrenia, and cause disruption of routine activities. Computer-assisted diagnosis of schizophrenia is significantly needed to give its patients a higher quality of life. Hence, an improved adaptive neuro-fuzzy inference system based on the Hybrid Grey Wolf-Bat Algorithm for accurate prediction of schizophrenia from multi-channel EEG signals is presented in this study. The EEG signals are pre-processed using a Butterworth band pass filter and wICA initially, from which statistical, time-domain, frequency-domain, and spectral features are extracted. Discriminating features are selected using the ReliefF algorithm and are then forwarded to ANFIS for classification into either schizophrenic or normal. ANFIS is optimized by the Hybrid Grey Wolf-Bat Algorithm (HWBO) for better efficiency. The method is experimented on two separate EEG datasets-1 and 2, demonstrating an accuracy of 99.54% and 99.35%, respectively, with appreciable F1-score and MCC. Further experiments reveal the efficiency of the Hybrid Wolf-Bat algorithm in optimizing the ANFIS parameters when compared with traditional ANFIS model and other proven algorithms like genetic algorithm-ANFIS, particle optimization-ANFIS, crow search optimization algorithm-ANFIS and ant colony optimization algorithm-ANFIS, showing high R2 value and low RSME value. To provide a bias free classification, tenfold cross validation is performed which produced an accuracy of 97.8% and 98.5% on the two datasets respectively. Experimental outcomes demonstrate the superiority of the Hybrid Grey Wolf-Bat Algorithm over the similar techniques in predicting schizophrenia.
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Affiliation(s)
| | - K. Ramya
- PA College of Engineering and Technology, Pollachi, India
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36
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Du Y, Kong Y, He X. IABC: A Toolbox for Intelligent Analysis of Brain Connectivity. Neuroinformatics 2023; 21:303-321. [PMID: 36609668 DOI: 10.1007/s12021-022-09617-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/30/2022] [Indexed: 01/09/2023]
Abstract
Brain functional networks and connectivity have played an important role in exploring brain function for understanding the brain and disclosing the mechanisms of brain disorders. Independent component analysis (ICA) is one of the most widely applied data-driven methods to extract brain functional networks/connectivity. However, it is hard to guarantee the reliability of networks/connectivity due to the randomness of component order and the difficulty in selecting an optimal component number in ICA. To facilitate the analysis of brain functional networks and connectivity using ICA, we developed a MATLAB toolbox called Intelligent Analysis of Brain Connectivity (IABC). IABC incorporates our previously proposed group information guided independent component analysis (GIG-ICA), NeuroMark, and splitting-merging assisted reliable ICA (SMART ICA) methods, which can estimate reliable individual-subject neuroimaging measures for further analysis. After user inputs functional magnetic resonance imaging (fMRI) data of multiple subjects that are regularly organized (e.g., in Brain Imaging Data Structure (BIDS)) and clicks a few buttons to set parameters, IABC automatically outputs brain functional networks, their related time courses, and functional network connectivity of each subject. All these neuroimaging measures are promising for providing clues in understanding brain function and differentiating brain disorders.
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Affiliation(s)
- Yuhui Du
- School of Computer and Information Technology, Shanxi University, Taiyuan, China.
| | - Yanshu Kong
- School of Computer and Information Technology, Shanxi University, Taiyuan, China
| | - Xingyu He
- School of Computer and Information Technology, Shanxi University, Taiyuan, China
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37
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Chen X, Xie H, Li Z, Cheng G, Leng M, Wang FL. Information fusion and artificial intelligence for smart healthcare: a bibliometric study. Inf Process Manag 2023. [DOI: 10.1016/j.ipm.2022.103113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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38
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Supakar R, Satvaya P, Chakrabarti P. A deep learning based model using RNN-LSTM for the Detection of Schizophrenia from EEG data. Comput Biol Med 2022; 151:106225. [PMID: 36306576 DOI: 10.1016/j.compbiomed.2022.106225] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 09/19/2022] [Accepted: 10/15/2022] [Indexed: 12/27/2022]
Abstract
Normal life can be ensured for schizophrenic patients if diagnosed early. Electroencephalogram (EEG) carries information about the brain network connectivity which can be used to detect brain anomalies that are indicative of schizophrenia. Since deep learning is capable of automatically extracting the significant features and make classifications, the authors proposed a deep learning based model using RNN-LSTM to analyze the EEG signal data to diagnose schizophrenia. The proposed model used three dense layers on top of a 100 dimensional LSTM. EEG signal data of 45 schizophrenic patients and 39 healthy subjects were used in the study. Dimensionality reduction algorithm was used to obtain an optimal feature set and the classifier was run with both sets of data. An accuracy of 98% and 93.67% were obtained with the complete feature set and the reduced feature set respectively. The robustness of the model was evaluated using model performance measure and combined performance measure. Outcomes were compared with the outcome obtained with traditional machine learning classifiers such as Random Forest, SVM, FURIA, and AdaBoost, and the proposed model was found to perform better with the complete dataset. When compared with the result of the researchers who worked with the same set of data using either CNN or RNN, the proposed model's accuracy was either better or comparable to theirs.
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Affiliation(s)
- Rinku Supakar
- Lincoln University College, Malaysia; Dr. Sudhir Chandra Sur Institute of Technology and Sports Complex, Dumdum, West Bengal, India.
| | | | - Prasun Chakrabarti
- Provost and Institute Endowed Distinguished Senior Chair Professor, Techno India NJR Institute of Technology, Udaipur, Rajasthan, ThuDau Mot University Vietnam, India.
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39
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Keihani A, Sajadi SS, Hasani M, Ferrarelli F. Bayesian Optimization of Machine Learning Classification of Resting-State EEG Microstates in Schizophrenia: A Proof-of-Concept Preliminary Study Based on Secondary Analysis. Brain Sci 2022; 12:1497. [PMID: 36358423 PMCID: PMC9688063 DOI: 10.3390/brainsci12111497] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 10/22/2022] [Accepted: 11/02/2022] [Indexed: 01/19/2024] Open
Abstract
Resting-state electroencephalography (EEG) microstates reflect sub-second, quasi-stable states of brain activity. Several studies have reported alterations of microstate features in patients with schizophrenia (SZ). Based on these findings, it has been suggested that microstates may represent neurophysiological biomarkers for the classification of SZ. To explore this possibility, machine learning approaches can be employed. Bayesian optimization is a machine learning approach that selects the best-fitted machine learning model with tuned hyperparameters from existing models to improve the classification. In this proof-of-concept preliminary study based on secondary analysis, 20 microstate features were extracted from 14 SZ patients and 14 healthy controls' EEG signals. These parameters were then ranked as predictors based on their importance, and an optimized machine learning approach was applied to evaluate the performance of the classification. SZ patients had altered microstate features compared to healthy controls. Furthermore, Bayesian optimization outperformed conventional multivariate analyses and showed the highest accuracy (90.93%), AUC (0.90), sensitivity (91.37%), and specificity (90.48%), with reliable results using just six microstate predictors. Altogether, in this proof-of-concept study, we showed that machine learning with Bayesian optimization can be utilized to characterize EEG microstate alterations and contribute to the classification of SZ patients.
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Affiliation(s)
- Ahmadreza Keihani
- Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213, USA
| | - Seyed Saman Sajadi
- Department of Medical Physics & Biomedical Engineering, School of Medicine, Tehran University of Medical Sciences, Tehran 1416634793, Iran
| | - Mahsa Hasani
- Institute of Medical Science and Technology, Shahid Beheshti University, Tehran 1985717443, Iran
| | - Fabio Ferrarelli
- Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213, USA
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40
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Singh NM, Harrod JB, Subramanian S, Robinson M, Chang K, Cetin-Karayumak S, Dalca AV, Eickhoff S, Fox M, Franke L, Golland P, Haehn D, Iglesias JE, O'Donnell LJ, Ou Y, Rathi Y, Siddiqi SH, Sun H, Westover MB, Whitfield-Gabrieli S, Gollub RL. How Machine Learning is Powering Neuroimaging to Improve Brain Health. Neuroinformatics 2022; 20:943-964. [PMID: 35347570 PMCID: PMC9515245 DOI: 10.1007/s12021-022-09572-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/07/2022] [Indexed: 12/31/2022]
Abstract
This report presents an overview of how machine learning is rapidly advancing clinical translational imaging in ways that will aid in the early detection, prediction, and treatment of diseases that threaten brain health. Towards this goal, we aresharing the information presented at a symposium, "Neuroimaging Indicators of Brain Structure and Function - Closing the Gap Between Research and Clinical Application", co-hosted by the McCance Center for Brain Health at Mass General Hospital and the MIT HST Neuroimaging Training Program on February 12, 2021. The symposium focused on the potential for machine learning approaches, applied to increasingly large-scale neuroimaging datasets, to transform healthcare delivery and change the trajectory of brain health by addressing brain care earlier in the lifespan. While not exhaustive, this overview uniquely addresses many of the technical challenges from image formation, to analysis and visualization, to synthesis and incorporation into the clinical workflow. Some of the ethical challenges inherent to this work are also explored, as are some of the regulatory requirements for implementation. We seek to educate, motivate, and inspire graduate students, postdoctoral fellows, and early career investigators to contribute to a future where neuroimaging meaningfully contributes to the maintenance of brain health.
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Affiliation(s)
- Nalini M Singh
- Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Jordan B Harrod
- Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Sandya Subramanian
- Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Mitchell Robinson
- Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Ken Chang
- Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Suheyla Cetin-Karayumak
- Department of Psychiatry, Brigham and Women's Hospital and Harvard Medical School, Boston, 02115, USA
| | | | - Simon Eickhoff
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
- Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7) Research Centre Jülich, Jülich, Germany
| | - Michael Fox
- Center for Brain Circuit Therapeutics, Department of Neurology, Psychiatry, and Radiology, Brigham and Women's Hospital and Harvard Medical School, 02115, Boston, USA
| | - Loraine Franke
- University of Massachusetts Boston, Boston, MA, 02125, USA
| | - Polina Golland
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Daniel Haehn
- University of Massachusetts Boston, Boston, MA, 02125, USA
| | - Juan Eugenio Iglesias
- Centre for Medical Image Computing, University College London, London, UK
- Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, 02114, USA
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Lauren J O'Donnell
- Department of Radiology, Brigham and Women's Hospital and Harvard Medical School, MA, 02115, Boston, USA
| | - Yangming Ou
- Department of Radiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, 02115, USA
| | - Yogesh Rathi
- Department of Psychiatry, Brigham and Women's Hospital and Harvard Medical School, Boston, 02115, USA
| | - Shan H Siddiqi
- Department of Psychiatry, Brigham and Women's Hospital and Harvard Medical School, Boston, 02115, USA
| | - Haoqi Sun
- Department of Neurology and McCance Center for Brain Health / Harvard Medical School, Massachusetts General Hospital, Boston, 02114, USA
| | - M Brandon Westover
- Department of Neurology and McCance Center for Brain Health / Harvard Medical School, Massachusetts General Hospital, Boston, 02114, USA
| | | | - Randy L Gollub
- Department of Psychiatry and Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Boston, MA, 02114, USA.
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41
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Parija S, Sahani M, Bisoi R, Dash PK. Autoencoder-based improved deep learning approach for schizophrenic EEG signal classification. Pattern Anal Appl 2022. [DOI: 10.1007/s10044-022-01107-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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42
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Siuly S, Li Y, Wen P, Alcin OF. SchizoGoogLeNet: The GoogLeNet-Based Deep Feature Extraction Design for Automatic Detection of Schizophrenia. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:1992596. [PMID: 36120676 PMCID: PMC9477585 DOI: 10.1155/2022/1992596] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/08/2022] [Indexed: 11/17/2022]
Abstract
Schizophrenia (SZ) is a severe and prolonged disorder of the human brain where people interpret reality in an abnormal way. Traditional methods of SZ detection are based on handcrafted feature extraction methods (manual process), which are tedious and unsophisticated, and also limited in their ability to balance efficiency and accuracy. To solve this issue, this study designed a deep learning-based feature extraction scheme involving the GoogLeNet model called "SchizoGoogLeNet" that can efficiently and automatically distinguish schizophrenic patients from healthy control (HC) subjects using electroencephalogram (EEG) signals with improved performance. The proposed framework involves multiple stages of EEG data processing. First, this study employs the average filtering method to remove noise and artifacts from the raw EEG signals to improve the signal-to-noise ratio. After that, a GoogLeNet model is designed to discover significant hidden features from denoised signals to identify schizophrenic patients from HC subjects. Finally, the obtained deep feature set is evaluated by the GoogleNet classifier and also some renowned machine learning classifiers to find a sustainable classification method for the obtained deep feature set. Experimental results show that the proposed deep feature extraction model with a support vector machine performs the best, producing a 99.02% correct classification rate for SZ, with an overall accuracy of 98.84%. Furthermore, our proposed model outperforms other existing methods. The proposed design is able to accurately discriminate SZ from HC, and it will be useful for developing a diagnostic tool for SZ detection.
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Affiliation(s)
- Siuly Siuly
- Institute for Sustainable Industries & Liveable Cities, Victoria University, Melbourne, Australia
| | - Yan Li
- School of Mathematics, Physics and Computing, University of Southern Queensland, Toowoomba, Australia
| | - Peng Wen
- School of Engineering, University of Southern Queensland, Toowoomba, Australia
| | - Omer Faruk Alcin
- Department of Electrical and Electronics Engineering, Turgut Ozal University, Malatya, Turkey
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43
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Gordillo D, da Cruz JR, Chkonia E, Lin WH, Favrod O, Brand A, Figueiredo P, Roinishvili M, Herzog MH. The EEG multiverse of schizophrenia. Cereb Cortex 2022; 33:3816-3826. [PMID: 36030389 PMCID: PMC10068296 DOI: 10.1093/cercor/bhac309] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 07/15/2022] [Accepted: 07/15/2022] [Indexed: 11/14/2022] Open
Abstract
Research on schizophrenia typically focuses on one paradigm for which clear-cut differences between patients and controls are established. Great efforts are made to understand the underlying genetical, neurophysiological, and cognitive mechanisms, which eventually may explain the clinical outcome. One tacit assumption of these "deep rooting" approaches is that paradigms tap into common and representative aspects of the disorder. Here, we analyzed the resting-state electroencephalogram (EEG) of 121 schizophrenia patients and 75 controls. Using multiple signal processing methods, we extracted 194 EEG features. Sixty-nine out of the 194 EEG features showed a significant difference between patients and controls, indicating that these features detect an important aspect of schizophrenia. Surprisingly, the correlations between these features were very low. We discuss several explanations to our results and propose that complementing "deep" with "shallow" rooting approaches might help in understanding the underlying mechanisms of the disorder.
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Affiliation(s)
- Dario Gordillo
- Corresponding author: Laboratory of Psychophysics, Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
| | | | - Eka Chkonia
- Department of Psychiatry, Tbilisi State Medical University (TSMU), 0186 Tbilisi, Georgia
- Institute of Cognitive Neurosciences, Free University of Tbilisi, 0159 Tbilisi, Georgia
| | - Wei-Hsiang Lin
- Laboratory of Psychophysics, Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Ophélie Favrod
- Laboratory of Psychophysics, Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Andreas Brand
- Laboratory of Psychophysics, Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Patrícia Figueiredo
- Institute for Systems and Robotics – Lisboa, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisbon, Portugal
| | - Maya Roinishvili
- Institute of Cognitive Neurosciences, Free University of Tbilisi, 0159 Tbilisi, Georgia
- Laboratory of Vision Physiology, Ivane Beritashvili Centre of Experimental Biomedicine, 0160 Tbilisi, Georgia
| | - Michael H Herzog
- Laboratory of Psychophysics, Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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44
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Sun X, Zheng X, Li T, Li Y, Cui L. Multimodal Emotion Classification Method and Analysis of Brain Functional Connectivity Networks. IEEE Trans Neural Syst Rehabil Eng 2022; 30:2022-2031. [PMID: 35857726 DOI: 10.1109/tnsre.2022.3192533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Since multimodal emotion classification in different human states has rarely been studied, this paper explores the emotional mechanisms of the brain functional connectivity networks after emotional stimulation. We devise a multimodal emotion classification method fusing a brain functional connectivity network based on electroencephalography (EEG) and eye gaze (ECFCEG) to study emotional mechanisms. First, the nonlinear phase lag index (PLI) and phase-locked value (PLV) are calculated to construct the multiband brain functional connectivity networks, which are then converted into binary brain networks, and the seven features of the binary brain networks are extracted. At the same time, the features of the eye gaze signals are extracted. Then, a fusion algorithm called kernel canonical correlation analysis, based on feature level and randomization (FRKCCA), is executed for feature-level fusion (FLF) of brain functional connectivity networks and eye gaze. Finally, support vector machines (SVMs) are utilized to classify positive and negative emotions in multiple frequency bands with single modal features and multimodal features. The experimental results demonstrate that multimodal complementary representation properties can effectively improve the accuracy of emotion classification, achieving a classification accuracy of 91.32±1.81%. The classification accuracy of pupil diameter in the valence dimension is higher than that of additional features. In addition, the average emotion classification effect of the valence dimension is preferable to that of arousal. Our findings demonstrate that the brain functional connectivity networks of the right brain exhibit a deficiency. In particular, the information processing ability of the right temporal (RT) and right posterior (RP) regions is weak in the low frequency after emotional stimulation; Conversely, phase synchronization of the brain functional connectivity networks based on PLI is stronger than that of PLV.
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45
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Xin X, Duan F, Kranz GS, Shu D, Fan R, Gao Y, Yan Z, Chang J. Functional network characteristics based on EEG of patients in acute ischemic stroke: A pilot study. NeuroRehabilitation 2022; 51:455-465. [PMID: 35848041 DOI: 10.3233/nre-220107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND Ischemic stroke is a common type of stroke associated with reorganization of functional network of the brain. OBJECTIVE This pilot study aimed to investigate the characteristics of functional brain networks based on EEG in patients with acute ischemic stroke. METHODS Seven patients with ischemic stroke within 72 hours of onset and seven healthy controls were enrolled in the study. Dynamic EEG monitoring and clinical information were repeatedly collected within 72 hours (T1), on the 5th day (T2), and on the 7th day (T3) of stroke onset. A directed transfer function was employed to construct functional brain connection patterns. Graph theoretical analysis was performed to evaluate the characteristics of functional brain networks. RESULTS First, we found that the brain networks of ischemic stroke patients were quite different from the healthy controls. The clustering coefficient (0.001 < Threshold < 0.2) in Delta, Theta, and Alpha bands for the patients were significantly lower (P < 0.01) and the shortest path length in all bands (0.001 < Threshold < 0.2) for the patients were significantly longer (P < 0.01). Moreover, the peaks of the shortest path length for the patients seemed to be higher in all bands with larger thresholds. Secondly, the brain networks for the patients showed a characterized time-variation pattern. The clustering coefficient (0.001 < Threshold < 0.2) of T1 was higher than that of T2 in alpha band (P < 0.01). The shortest path length (0.001 < Threshold < 0.2) of T3 was shorter than that of T2 (P < 0.01) in all bands, and the peak of T3 was numerically higher than that of T2 in all bands with narrower thresholds. CONCLUSION Functional brain networks in patients with acute ischemic stroke showed impaired global functional integration and decreased efficiency of information transmission compared with healthy subjects. The shortening of the shortest path length during the recovery indicates neural plasticity and reorganization.
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Affiliation(s)
- Xiyan Xin
- TCM Department, Peking University Third Hospital, Beijing, China
| | - Fang Duan
- Department of Information Science& Engineering, Huaqiao University, Xiamen, China
| | - Georg S Kranz
- Department of Rehabilitation Sciences, The Hong Kong Polytechnic University, Hong Kong, China.,Department of Psychiatry and Psychotherapy, Medical University of Vienna, Vienna, Austria.,TheState Key Laboratory of Brain and Cognitive Sciences, The Universityof Hong Kong, Hong Kong, China
| | - Dong Shu
- Department of Information Science& Engineering, Huaqiao University, Xiamen, China
| | - Ruiwen Fan
- TCM Department, Peking University Third Hospital, Beijing, China
| | - Ying Gao
- Department of Neurology, Dongzhimen Hospital, Beijing University of ChineseMedicine, Beijing, China
| | - Zheng Yan
- Department of Information Science& Engineering, Huaqiao University, Xiamen, China
| | - Jingling Chang
- Department of Neurology, Dongzhimen Hospital, Beijing University of ChineseMedicine, Beijing, China
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46
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Sadeghi D, Shoeibi A, Ghassemi N, Moridian P, Khadem A, Alizadehsani R, Teshnehlab M, Gorriz JM, Khozeimeh F, Zhang YD, Nahavandi S, Acharya UR. An overview of artificial intelligence techniques for diagnosis of Schizophrenia based on magnetic resonance imaging modalities: Methods, challenges, and future works. Comput Biol Med 2022; 146:105554. [DOI: 10.1016/j.compbiomed.2022.105554] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 04/11/2022] [Accepted: 04/11/2022] [Indexed: 12/21/2022]
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47
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Bagherzadeh S, Shahabi MS, Shalbaf A. Detection of schizophrenia using hybrid of deep learning and brain effective connectivity image from electroencephalogram signal. Comput Biol Med 2022; 146:105570. [DOI: 10.1016/j.compbiomed.2022.105570] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Revised: 04/14/2022] [Accepted: 04/25/2022] [Indexed: 02/06/2023]
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48
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Going deep into schizophrenia with artificial intelligence. Schizophr Res 2022; 245:122-140. [PMID: 34103242 DOI: 10.1016/j.schres.2021.05.018] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 05/24/2021] [Accepted: 05/27/2021] [Indexed: 12/30/2022]
Abstract
Despite years of research, the mechanisms governing the onset, relapse, symptomatology, and treatment of schizophrenia (SZ) remain elusive. The lack of appropriate analytic tools to deal with the heterogeneity and complexity of SZ may be one of the reasons behind this situation. Deep learning, a subfield of artificial intelligence (AI) inspired by the nervous system, has recently provided an accessible way of modeling and analyzing complex, high-dimensional, nonlinear systems. The unprecedented accuracy of deep learning algorithms in classification and prediction tasks has revolutionized a wide range of scientific fields and is rapidly permeating SZ research. Deep learning has the potential of becoming a valuable aid for clinicians in the prediction, diagnosis, and treatment of SZ, especially in combination with principles from Bayesian statistics. Furthermore, deep learning could become a powerful tool for uncovering the mechanisms underlying SZ thanks to a growing number of techniques designed for improving model interpretability and causal reasoning. The purpose of this article is to introduce SZ researchers to the field of deep learning and review its latest applications in SZ research. In general, existing studies have yielded impressive results in classification and outcome prediction tasks. However, methodological concerns related to the assessment of model performance in several studies, the widespread use of small training datasets, and the little clinical value of some models suggest that some of these results should be taken with caution.
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49
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A novel approach for detection of consciousness level in comatose patients from EEG signals with 1-D convolutional neural network. Biocybern Biomed Eng 2022. [DOI: 10.1016/j.bbe.2021.11.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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50
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Plechawska-Wójcik M, Karczmarek P, Krukow P, Kaczorowska M, Tokovarov M, Jonak K. Recognition of Electroencephalography-Related Features of Neuronal Network Organization in Patients With Schizophrenia Using the Generalized Choquet Integrals. Front Neuroinform 2022; 15:744355. [PMID: 34970131 PMCID: PMC8712566 DOI: 10.3389/fninf.2021.744355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 11/09/2021] [Indexed: 11/13/2022] Open
Abstract
In this study, we focused on the verification of suitable aggregation operators enabling accurate differentiation of selected neurophysiological features extracted from resting-state electroencephalographic recordings of patients who were diagnosed with schizophrenia (SZ) or healthy controls (HC). We built the Choquet integral-based operators using traditional classification results as an input to the procedure of establishing the fuzzy measure densities. The dataset applied in the study was a collection of variables characterizing the organization of the neural networks computed using the minimum spanning tree (MST) algorithms obtained from signal-spaced functional connectivity indicators and calculated separately for predefined frequency bands using classical linear Granger causality (GC) measure. In the series of numerical experiments, we reported the results of classification obtained using numerous generalizations of the Choquet integral and other aggregation functions, which were tested to find the most appropriate ones. The obtained results demonstrate that the classification accuracy can be increased by 1.81% using the extended versions of the Choquet integral called in the literature, namely, generalized Choquet integral or pre-aggregation operators.
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Affiliation(s)
| | - Paweł Karczmarek
- Department of Computer Science, Lublin University of Technology, Lublin, Poland
| | - Paweł Krukow
- Department of Clinical Neuropsychiatry, Medical University of Lublin, Lublin, Poland
| | - Monika Kaczorowska
- Department of Computer Science, Lublin University of Technology, Lublin, Poland
| | - Mikhail Tokovarov
- Department of Computer Science, Lublin University of Technology, Lublin, Poland
| | - Kamil Jonak
- Department of Computer Science, Lublin University of Technology, Lublin, Poland.,Department of Clinical Neuropsychiatry, Medical University of Lublin, Lublin, Poland
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