Leveraging Data Science to Combat COVID-19: A Comprehensive Review

Predicting Escalation of Care for Childhood Pneumonia Using Machine Learning: Retrospective Analysis and Model Development

Background

Pneumonia is a leading cause of mortality in children aged <5 years. While machine learning (ML) has been applied to pneumonia diagnostics, few studies have focused on predicting the need for escalation of care in pediatric cases. This study aims to develop an ML-based clinical decision support tool for predicting the need for escalation of care in community-acquired pneumonia cases.

Objective

The primary objective was to develop a robust predictive tool to help primary care physicians determine where and how a case should be managed.

Methods

Data from 437 children with community-acquired pneumonia, collected before the COVID-19 pandemic, were retrospectively analyzed. Pediatricians encoded key clinical features from unstructured medical records based on Integrated Management of Childhood Illness guidelines. After preprocessing with Synthetic Minority Oversampling Technique-Tomek to handle imbalanced data, feature selection was performed using Shapley additive explanations values. The model was optimized through hyperparameter tuning and ensembling. The primary outcome was the level of care severity, defined as the need for referral to a tertiary care unit for intensive care or respiratory support.

Results

A total of 437 cases were analyzed, and the optimized models predicted the need for transfer to a higher level of care with an accuracy of 77% to 88%, achieving an area under the receiver operator characteristic curve of 0.88 and an area under the precision-recall curve of 0.96. Shapley additive explanations value analysis identified hypoxia, respiratory distress, age, weight-for-age z score, and complaint duration as the most important clinical predictors independent of laboratory diagnostics.

Conclusions

This study demonstrates the feasibility of applying ML techniques to create a prognostic care decision tool for childhood pneumonia. It provides early identification of cases requiring escalation of care by combining foundational clinical skills with data science methods.

Challenges issues and future recommendations of deep learning techniques for SARS-CoV-2 detection utilising X-ray and CT images: a comprehensive review

The global spread of SARS-CoV-2 has prompted a crucial need for accurate medical diagnosis, particularly in the respiratory system. Current diagnostic methods heavily rely on imaging techniques like CT scans and X-rays, but identifying SARS-CoV-2 in these images proves to be challenging and time-consuming. In this context, artificial intelligence (AI) models, specifically deep learning (DL) networks, emerge as a promising solution in medical image analysis. This article provides a meticulous and comprehensive review of imaging-based SARS-CoV-2 diagnosis using deep learning techniques up to May 2024. This article starts with an overview of imaging-based SARS-CoV-2 diagnosis, covering the basic steps of deep learning-based SARS-CoV-2 diagnosis, SARS-CoV-2 data sources, data pre-processing methods, the taxonomy of deep learning techniques, findings, research gaps and performance evaluation. We also focus on addressing current privacy issues, limitations, and challenges in the realm of SARS-CoV-2 diagnosis. According to the taxonomy, each deep learning model is discussed, encompassing its core functionality and a critical assessment of its suitability for imaging-based SARS-CoV-2 detection. A comparative analysis is included by summarizing all relevant studies to provide an overall visualization. Considering the challenges of identifying the best deep-learning model for imaging-based SARS-CoV-2 detection, the article conducts an experiment with twelve contemporary deep-learning techniques. The experimental result shows that the MobileNetV3 model outperforms other deep learning models with an accuracy of 98.11%. Finally, the article elaborates on the current challenges in deep learning-based SARS-CoV-2 diagnosis and explores potential future directions and methodological recommendations for research and advancement.

Lung pneumonia severity scoring in chest X-ray images using transformers

To create robust and adaptable methods for lung pneumonia diagnosis and the assessment of its severity using chest X-rays (CXR), access to well-curated, extensive datasets is crucial. Many current severity quantification approaches require resource-intensive training for optimal results. Healthcare practitioners require efficient computational tools to swiftly identify COVID-19 cases and predict the severity of the condition. In this research, we introduce a novel image augmentation scheme as well as a neural network model founded on Vision Transformers (ViT) with a small number of trainable parameters for quantifying COVID-19 severity and other lung diseases. Our method, named Vision Transformer Regressor Infection Prediction (ViTReg-IP), leverages a ViT architecture and a regression head. To assess the model's adaptability, we evaluate its performance on diverse chest radiograph datasets from various open sources. We conduct a comparative analysis against several competing deep learning methods. Our results achieved a minimum Mean Absolute Error (MAE) of 0.569 and 0.512 and a maximum Pearson Correlation Coefficient (PC) of 0.923 and 0.855 for the geographic extent score and the lung opacity score, respectively, when the CXRs from the RALO dataset were used in training. The experimental results reveal that our model delivers exceptional performance in severity quantification while maintaining robust generalizability, all with relatively modest computational requirements. The source codes used in our work are publicly available at https://github.com/bouthainas/ViTReg-IP .

Short- and Long-Term Predicted and Witnessed Consequences of Digital Surveillance During the COVID-19 Pandemic: Scoping Review

BACKGROUND

The COVID-19 pandemic has prompted the deployment of digital technologies for public health surveillance globally. The rapid development and use of these technologies have curtailed opportunities to fully consider their potential impacts (eg, for human rights, civil liberties, privacy, and marginalization of vulnerable groups).

OBJECTIVE

We conducted a scoping review of peer-reviewed and gray literature to identify the types and applications of digital technologies used for surveillance during the COVID-19 pandemic and the predicted and witnessed consequences of digital surveillance.

METHODS

Our methodology was informed by the 5-stage methodological framework to guide scoping reviews: identifying the research question; identifying relevant studies; study selection; charting the data; and collating, summarizing, and reporting the findings. We conducted a search of peer-reviewed and gray literature published between December 1, 2019, and December 31, 2020. We focused on the first year of the pandemic to provide a snapshot of the questions, concerns, findings, and discussions emerging from peer-reviewed and gray literature during this pivotal first year of the pandemic. Our review followed the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews) reporting guidelines.

RESULTS

We reviewed a total of 147 peer-reviewed and 79 gray literature publications. Based on our analysis of these publications, we identified a total of 90 countries and regions where digital technologies were used for public health surveillance during the COVID-19 pandemic. Some of the most frequently used technologies included mobile phone apps, location-tracking technologies, drones, temperature-scanning technologies, and wearable devices. We also found that the literature raised concerns regarding the implications of digital surveillance in relation to data security and privacy, function creep and mission creep, private sector involvement in surveillance, human rights, civil liberties, and impacts on marginalized groups. Finally, we identified recommendations for ethical digital technology design and use, including proportionality, transparency, purpose limitation, protecting privacy and security, and accountability.

CONCLUSIONS

A wide range of digital technologies was used worldwide to support public health surveillance during the COVID-19 pandemic. The findings of our analysis highlight the importance of considering short- and long-term consequences of digital surveillance not only during the COVID-19 pandemic but also for future public health crises. These findings also demonstrate the ways in which digital surveillance has rendered visible the shifting and blurred boundaries between public health surveillance and other forms of surveillance, particularly given the ubiquitous nature of digital surveillance.

INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID)

RR2-https://doi.org/10.1136/bmjopen-2021-053962.

Using a decision tree to predict the number of COVID cases: a tutorial for beginners

This manuscript describes the development of a module that is part of a learning platform named "NIGMS Sandbox for Cloud-based Learning" https://github.com/NIGMS/NIGMS-Sandbox . The overall genesis of the Sandbox is described in the editorial NIGMS Sandbox at the beginning of this Supplement. This module delivers learning materials on machine learning and decision tree concepts in an interactive format that uses appropriate cloud resources for data access and analyses. Machine learning (ML) is an important tool in biomedical research and can lead to improvements in diagnosis, treatment, and prevention of diseases. During the COVID pandemic ML was used for predictions at the patient and community levels. Given its ubiquity, it is important that future doctors, researchers and teachers get acquainted with ML and its contributions to research. Our goal is to make it easier for everyone to learn about machine learning. The learning module we present here is based on a small COVID dataset, videos, annotated code and the use of Google Colab or the Google Cloud Platform (GCP). The benefit of these platforms is that students do not have to set up a programming environment on their computer which saves time and is also an important democratization factor. The module focuses on learning the basics of decision trees by applying them to COVID data. It introduces basic terminology used in supervised machine learning and its relevance to research. Our experience with biology students at San Francisco State University suggests that the material increases interest in ML.

COVID-19 Detection Using Contemporary Biosensors and Machine Learning Approach: A Review

The current global pandemic not only claims countless human lives but also rocks the economies of every country on the planet. This fact needs the development of novel, productive, and efficient techniques to detect the SARS-CoV-2 virus. This review article discusses the current state of SARS-CoV-2 virus detection methods such as electrochemical, fluorescent, and electronic, etc., as well as the potential of optical sensors with a wide range of novel approaches and models. This review provides a comprehensive comparison of various detection methods by comparing the various techniques in depth. In addition, there is a brief discussion of the futuristic approach combining optical sensors with machine learning algorithms. It is believed that this study would prove to be critical for the scientific community to explore solutions for detecting viruses with improved functionality.

The binding mechanism of failed, in processing and succeed inhibitors target SARS-CoV-2 main protease

Since the outbreak of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), several variants have caused a persistent pandemic. Consequently, it is crucial to develop new potential anti-SARS-CoV-2 drugs with specificity. To minimize potential failures and preserve valuable clinical resources for the development of other useful drugs, researchers must enhance their understanding of the interactions between drugs and SARS-CoV-2. While numerous crystal structures of the SARS-CoV-2 main protease (SCM) and its inhibitors have been reported, they provide only static snapshots and fail to capture the dynamic nature of SCM/inhibitor interactions. Herein, we conducted molecular dynamics simulations for five SCM complexes: ritonavir (SCM/RTV), lopinavir (SCM/LPV), the identified inhibitor N3 (SCM/N3), the approved inhibitor ensitrelvir (SCM/ESV), and the approved drug nirmatrelvir (SCM/NMV). Additionally, we explored the potential for covalent bond formation in the N3 and NMV inhibitors through QM/MM calculations using Umbrella sampling. The results show that the binding site is highly flexible to fit those five different inhibitors and each compound has its unique binding mode at the same binding site. Moreover, the binding affinities of positive and negative inhibitors to SCM exhibit significant differences. By gaining insights into the dynamics, we can potentially elucidate why lopinavir/ritonavir, initially considered promising, failed to effectively treat COVID-19. Furthermore, understanding the mechanistic aspects of N3 and NMV inhibition on SCM not only contributes to rational drug discovery against COVID-19 but also aids future studies on the catalytic mechanisms of main proteases in other novel coronaviruses.Communicated by Ramaswamy H. Sarma.

Predicting Depression during the COVID-19 Pandemic Using Interpretable TabNet: A Case Study in South Korea

COVID-19 has further aggravated problems by compelling people to stay indoors and limit social interactions, leading to a worsening of the depression situation. This study aimed to construct a TabNet model combined with SHapley Additive exPlanations (SHAP) to predict depression in South Korean society during the COVID-19 pandemic. We used a tabular dataset extracted from the Seoul Welfare Survey with a total of 3027 samples. The TabNet model was trained on this dataset, and its performance was compared to that of several other machine learning models, including Random Forest, eXtreme Gradient Boosting, Light Gradient Boosting, and CatBoost. According to the results, the TabNet model achieved an Area under the receiver operating characteristic curve value (AUC) of 0.9957 on the training set and an AUC of 0.9937 on the test set. Additionally, the study investigated the TabNet model’s local interpretability using SHapley Additive exPlanations (SHAP) to provide post hoc global and local explanations for the proposed model. By combining the TabNet model with SHAP, our proposed model might offer a valuable tool for professionals in social fields, and psychologists without expert knowledge in the field of data analysis can easily comprehend the decision-making process of this AI model.

Mask-Transformer-Based Networks for Teeth Segmentation in Panoramic Radiographs

Teeth segmentation plays a pivotal role in dentistry by facilitating accurate diagnoses and aiding the development of effective treatment plans. While traditional methods have primarily focused on teeth segmentation, they often fail to consider the broader oral tissue context. This paper proposes a panoptic-segmentation-based method that combines the results of instance segmentation with semantic segmentation of the background. Particularly, we introduce a novel architecture for instance teeth segmentation that leverages a dual-path transformer-based network, integrated with a panoptic quality (PQ) loss function. The model directly predicts masks and their corresponding classes, with the PQ loss function streamlining the training process. Our proposed architecture features a dual-path transformer block that facilitates bi-directional communication between the pixel path CNN and the memory path. It also contains a stacked decoder block that aggregates multi-scale features across different decoding resolutions. The transformer block integrates pixel-to-memory feedback attention, pixel-to-pixel self-attention, and memory-to-pixel and memory-to-memory self-attention mechanisms. The output heads process features to predict mask classes, while the final mask is obtained by multiplying memory path and pixel path features. When applied to the UFBA-UESC Dental Image dataset, our model exhibits a substantial improvement in segmentation performance, surpassing existing state-of-the-art techniques in terms of performance and robustness. Our research signifies an essential step forward in teeth segmentation and contributes to a deeper understanding of oral structures.

The IHI Rochester Report 2022 on Healthcare Informatics Research: Resuming After the CoViD-19

In 2020, the CoViD-19 pandemic spread worldwide in an unexpected way and suddenly modified many life issues, including social habits, social relationships, teaching modalities, and more. Such changes were also observable in many different healthcare and medical contexts. Moreover, the CoViD-19 pandemic acted as a stress test for many research endeavors, and revealed some limitations, especially in contexts where research results had an immediate impact on the social and healthcare habits of millions of people. As a result, the research community is called to perform a deep analysis of the steps already taken, and to re-think steps for the near and far future to capitalize on the lessons learned due to the pandemic. In this direction, on June 09th-11th, 2022, a group of twelve healthcare informatics researchers met in Rochester, MN, USA. This meeting was initiated by the Institute for Healthcare Informatics-IHI, and hosted by the Mayo Clinic. The goal of the meeting was to discuss and propose a research agenda for biomedical and health informatics for the next decade, in light of the changes and the lessons learned from the CoViD-19 pandemic. This article reports the main topics discussed and the conclusions reached. The intended readers of this paper, besides the biomedical and health informatics research community, are all those stakeholders in academia, industry, and government, who could benefit from the new research findings in biomedical and health informatics research. Indeed, research directions and social and policy implications are the main focus of the research agenda we propose, according to three levels: the care of individuals, the healthcare system view, and the population view.

Automatic detection of health misinformation: a systematic review

The spread of health misinformation has the potential to cause serious harm to public health, from leading to vaccine hesitancy to adoption of unproven disease treatments. In addition, it could have other effects on society such as an increase in hate speech towards ethnic groups or medical experts. To counteract the sheer amount of misinformation, there is a need to use automatic detection methods. In this paper we conduct a systematic review of the computer science literature exploring text mining techniques and machine learning methods to detect health misinformation. To organize the reviewed papers, we propose a taxonomy, examine publicly available datasets, and conduct a content-based analysis to investigate analogies and differences among Covid-19 datasets and datasets related to other health domains. Finally, we describe open challenges and conclude with future directions.

Boosting automatic COVID-19 detection performance with self-supervised learning and batch knowledge ensembling

PROBLEM

Detecting COVID-19 from chest X-ray (CXR) images has become one of the fastest and easiest methods for detecting COVID-19. However, the existing methods usually use supervised transfer learning from natural images as a pretraining process. These methods do not consider the unique features of COVID-19 and the similar features between COVID-19 and other pneumonia.

AIM

In this paper, we want to design a novel high-accuracy COVID-19 detection method that uses CXR images, which can consider the unique features of COVID-19 and the similar features between COVID-19 and other pneumonia.

METHODS

Our method consists of two phases. One is self-supervised learning-based pertaining; the other is batch knowledge ensembling-based fine-tuning. Self-supervised learning-based pretraining can learn distinguished representations from CXR images without manually annotated labels. On the other hand, batch knowledge ensembling-based fine-tuning can utilize category knowledge of images in a batch according to their visual feature similarities to improve detection performance. Unlike our previous implementation, we introduce batch knowledge ensembling into the fine-tuning phase, reducing the memory used in self-supervised learning and improving COVID-19 detection accuracy.

RESULTS

On two public COVID-19 CXR datasets, namely, a large dataset and an unbalanced dataset, our method exhibited promising COVID-19 detection performance. Our method maintains high detection accuracy even when annotated CXR training images are reduced significantly (e.g., using only 10% of the original dataset). In addition, our method is insensitive to changes in hyperparameters.

CONCLUSION

The proposed method outperforms other state-of-the-art COVID-19 detection methods in different settings. Our method can reduce the workloads of healthcare providers and radiologists.

MTSS-AAE: Multi-task semi-supervised adversarial autoencoding for COVID-19 detection based on chest X-ray images

Efficient diagnosis of COVID-19 plays an important role in preventing the spread of the disease. There are three major modalities to diagnose COVID-19 which include polymerase chain reaction tests, computed tomography scans, and chest X-rays (CXRs). Among these, diagnosis using CXRs is the most economical approach; however, it requires extensive human expertise to diagnose COVID-19 in CXRs, which may deprive it of cost-effectiveness. The computer-aided diagnosis with deep learning has the potential to perform accurate detection of COVID-19 in CXRs without human intervention while preserving its cost-effectiveness. Many efforts have been made to develop a highly accurate and robust solution. However, due to the limited amount of labeled data, existing solutions are evaluated on a small set of test dataset. In this work, we proposed a solution to this problem by using a multi-task semi-supervised learning (MTSSL) framework that utilized auxiliary tasks for which adequate data is publicly available. Specifically, we utilized Pneumonia, Lung Opacity, and Pleural Effusion as additional tasks using the ChesXpert dataset. We illustrated that the primary task of COVID-19 detection, for which only limited labeled data is available, can be improved by using this additional data. We further employed an adversarial autoencoder (AAE), which has a strong capability to learn powerful and discriminative features, within our MTSSL framework to maximize the benefit of multi-task learning. In addition, the supervised classification networks in combination with the unsupervised AAE empower semi-supervised learning, which includes a discriminative part in the unsupervised AAE training pipeline. The generalization of our framework is improved due to this semi-supervised learning and thus it leads to enhancement in COVID-19 detection performance. The proposed model is rigorously evaluated on the largest publicly available COVID-19 dataset and experimental results show that the proposed model attained state-of-the-art performance.

Equilibrium-based COVID-19 diagnosis from routine blood tests: A sparse deep convolutional model

SARS-CoV2 (COVID-19) is the virus that causes the pandemic that has severely impacted human society with a massive death toll worldwide. Hence, there is a persistent need for fast and reliable automatic tools to help health teams in making clinical decisions. Predictive models could potentially ease the strain on healthcare systems by early and reliable screening of COVID-19 patients which helps to combat the spread of the disease. Recent studies have reported some key advantages of employing routine blood tests for initial screening of COVID-19 patients. Thus, in this paper, we propose a novel COVID-19 prediction model based on routine blood tests. In this model, we depend on exploiting the real dependency among the employed feature pool by a sparsification procedure. In this sparse domain, a hybrid feature selection mechanism is proposed. This mechanism fuses the selected features from two perspectives, the first is Pearson correlation and the second is a new Minkowski-based equilibrium optimizer (MEO). Then, the selected features are fed into a new 1D Convolutional Neural Network (1DCNN) for a final diagnosis decision. The proposed prediction model is tested with a new public dataset from San Raphael Hospital, Milan, Italy, i.e., OSR dataset which has two sub-datasets. According to the experimental results, the proposed model outperforms the state-of-the-art techniques with an average testing accuracy of 98.5% while we employ only less than half the size of the feature pool, i.e., we need only less than half the given blood tests in the employed dataset to get a final diagnosis decision.

Selective Deeply Supervised Multi-Scale Attention Network for Brain Tumor Segmentation

Brain tumors are among the deadliest forms of cancer, characterized by abnormal proliferation of brain cells. While early identification of brain tumors can greatly aid in their therapy, the process of manual segmentation performed by expert doctors, which is often time-consuming, tedious, and prone to human error, can act as a bottleneck in the diagnostic process. This motivates the development of automated algorithms for brain tumor segmentation. However, accurately segmenting the enhanced and core tumor regions is complicated due to high levels of inter- and intra-tumor heterogeneity in terms of texture, morphology, and shape. This study proposes a fully automatic method called the selective deeply supervised multi-scale attention network (SDS-MSA-Net) for segmenting brain tumor regions using a multi-scale attention network with novel selective deep supervision (SDS) mechanisms for training. The method utilizes a 3D input composed of five consecutive slices, in addition to a 2D slice, to maintain sequential information. The proposed multi-scale architecture includes two encoding units to extract meaningful global and local features from the 3D and 2D inputs, respectively. These coarse features are then passed through attention units to filter out redundant information by assigning lower weights. The refined features are fed into a decoder block, which upscales the features at various levels while learning patterns relevant to all tumor regions. The SDS block is introduced to immediately upscale features from intermediate layers of the decoder, with the aim of producing segmentations of the whole, enhanced, and core tumor regions. The proposed framework was evaluated on the BraTS2020 dataset and showed improved performance in brain tumor region segmentation, particularly in the segmentation of the core and enhancing tumor regions, demonstrating the effectiveness of the proposed approach. Our code is publicly available.

Densely attention mechanism based network for COVID-19 detection in chest X-rays

Automatic COVID-19 detection using chest X-ray (CXR) can play a vital part in large-scale screening and epidemic control. However, the radiographic features of CXR have different composite appearances, for instance, diffuse reticular-nodular opacities and widespread ground-glass opacities. This makes the automatic recognition of COVID-19 using CXR imaging a challenging task. To overcome this issue, we propose a densely attention mechanism-based network (DAM-Net) for COVID-19 detection in CXR. DAM-Net adaptively extracts spatial features of COVID-19 from the infected regions with various appearances and scales. Our proposed DAM-Net is composed of dense layers, channel attention layers, adaptive downsampling layer, and label smoothing regularization loss function. Dense layers extract the spatial features and the channel attention approach adaptively builds up the weights of major feature channels and suppresses the redundant feature representations. We use the cross-entropy loss function based on label smoothing to limit the effect of interclass similarity upon feature representations. The network is trained and tested on the largest publicly available dataset, i.e., COVIDx, consisting of 17,342 CXRs. Experimental results demonstrate that the proposed approach obtains state-of-the-art results for COVID-19 classification with an accuracy of 97.22%, a sensitivity of 96.87%, a specificity of 99.12%, and a precision of 95.54%.

Chimeric forecasting: combining probabilistic predictions from computational models and human judgment

Forecasts of the trajectory of an infectious agent can help guide public health decision making. A traditional approach to forecasting fits a computational model to structured data and generates a predictive distribution. However, human judgment has access to the same data as computational models plus experience, intuition, and subjective data. We propose a chimeric ensemble-a combination of computational and human judgment forecasts-as a novel approach to predicting the trajectory of an infectious agent. Each month from January, 2021 to June, 2021 we asked two generalist crowds, using the same criteria as the COVID-19 Forecast Hub, to submit a predictive distribution over incident cases and deaths at the US national level either two or three weeks into the future and combined these human judgment forecasts with forecasts from computational models submitted to the COVID-19 Forecasthub into a chimeric ensemble. We find a chimeric ensemble compared to an ensemble including only computational models improves predictions of incident cases and shows similar performance for predictions of incident deaths. A chimeric ensemble is a flexible, supportive public health tool and shows promising results for predictions of the spread of an infectious agent.

Agenda-Setting for COVID-19: A Study of Large-Scale Economic News Coverage Using Natural Language Processing

Over the past two years, organizations and businesses have been forced to constantly adapt and develop effective responses to the challenges of the COVID-19 pandemic. The acuteness, global scale and intense dynamism of the situation make online news and information even more important for making informed management and policy decisions. This paper focuses on the economic impact of the COVID-19 pandemic, using natural language processing (NLP) techniques to examine the news media as the main source of information and agenda-setters of public discourse over an eight-month period. The aim of this study is to understand which economic topics news media focused on alongside the dominant health coverage, which topics did not surface, and how these topics influenced each other and evolved over time and space. To this end, we used an extensive open-source dataset of over 350,000 media articles on non-medical aspects of COVID-19 retrieved from over 60 top-tier business blogs and news sites. We referred to the World Economic Forum's Strategic Intelligence taxonomy to categorize the articles into a variety of topics. In doing so, we found that in the early days of COVID-19, the news media focused predominantly on reporting new cases, which tended to overshadow other topics, such as the economic impact of the virus. Different independent news sources reported on the same topics, showing a herd behavior of the news media during this global health crisis. However, a temporal analysis of news distribution in relation to its geographic focus showed that the rise in COVID-19 cases was associated with an increase in media coverage of relevant socio-economic topics. This research helps prepare for the prevention of social and economic crises when decision-makers closely monitor news coverage of viruses and related topics in other parts of the world. Thus, monitoring the news landscape on a global scale can support decision-making in social and economic crises. Our analyses point to ways in which this monitoring and issues management can be improved to remain alert to social dynamics and market changes.

Spatial feature and resolution maximization GAN for bone suppression in chest radiographs

BACKGROUND AND OBJECTIVE

Chest radiographs (CXR) are in great demand for visualizing the pathology of the lungs. However, the appearance of bones in the lung region hinders the localization of any lesion or nodule present in the CXR. Thus, bone suppression becomes an important task for the effective screening of lung diseases. Simultaneously, it is equally important to preserve spatial information and image quality because they provide crucial insights on the size and area of infection, color accuracy, structural quality, etc. Many researchers considered bone suppression as an image denoising problem and proposed conditional Generative Adversarial Network-based (cGAN) models for generating bone suppressed images from CXRs. These works do not focus on the retention of spatial features and image quality. The authors of this manuscript developed the Spatial Feature and Resolution Maximization (SFRM) GAN to efficiently minimize the visibility of bones in CXRs while ensuring maximum retention of critical information.

METHOD

This task is achieved by modifying the architectures of the discriminator and generator of the pix2pix model. The discriminator is combined with the Wasserstein GAN with Gradient Penalty to increase its performance and training stability. For the generator, a combination of different task-specific loss functions, viz., L1, Perceptual, and Sobel loss are employed to capture the intrinsic information in the image.

RESULT

The proposed model reported as measures of performance a mean PSNR of 43.588, mean NMSE of 0.00025, mean SSIM of 0.989, and mean Entropy of 0.454 bits/pixel on a test size of 100 images. Further, the combination of δ=10⁴, α=1, β=10, and γ=10 are the hyperparameters that provided the best trade-off between image denoising and quality retention.

CONCLUSION

The degree of bone suppression and spatial information preservation can be improved by adding the Sobel and Perceptual loss respectively. SFRM-GAN not only suppresses bones but also retains the image quality and intrinsic information. Based on the results of student's t-test it is concluded that SFRM-GAN yields statistically significant results at a 0.95 level of confidence and shows its supremacy over the state-of-the-art models. Thus, it may be used for denoising and preprocessing of images.

Deep learning framework for prediction of infection severity of COVID-19

With the onset of the COVID-19 pandemic, quantifying the condition of positively diagnosed patients is of paramount importance. Chest CT scans can be used to measure the severity of a lung infection and the isolate involvement sites in order to increase awareness of a patient's disease progression. In this work, we developed a deep learning framework for lung infection severity prediction. To this end, we collected a dataset of 232 chest CT scans and involved two public datasets with an additional 59 scans for our model's training and used two external test sets with 21 scans for evaluation. On an input chest Computer Tomography (CT) scan, our framework, in parallel, performs a lung lobe segmentation utilizing a pre-trained model and infection segmentation using three distinct trained SE-ResNet18 based U-Net models, one for each of the axial, coronal, and sagittal views. By having the lobe and infection segmentation masks, we calculate the infection severity percentage in each lobe and classify that percentage into 6 categories of infection severity score using a k-nearest neighbors (k-NN) model. The lobe segmentation model achieved a Dice Similarity Score (DSC) in the range of [0.918, 0.981] for different lung lobes and our infection segmentation models gained DSC scores of 0.7254 and 0.7105 on our two test sets, respectfully. Similarly, two resident radiologists were assigned the same infection segmentation tasks, for which they obtained a DSC score of 0.7281 and 0.6693 on the two test sets. At last, performance on infection severity score over the entire test datasets was calculated, for which the framework's resulted in a Mean Absolute Error (MAE) of 0.505 ± 0.029, while the resident radiologists' was 0.571 ± 0.039.

Finding answers to COVID-19-specific questions: An information retrieval system based on latent keywords and adapted TF-IDF

The scientific community has reacted to the COVID-19 outbreak by producing a high number of literary works that are helping us to understand a variety of topics related to the pandemic from different perspectives. Dealing with this large amount of information can be challenging, especially when researchers need to find answers to complex questions about specific topics. We present an Information Retrieval System that uses latent information to select relevant works related to specific concepts. By applying Latent Dirichlet Allocation (LDA) models to documents, we can identify key concepts related to a specific query and a corpus. Our method is iterative in that, from an initial input query defined by the user, the original query is expanded for each subsequent iteration. In addition, our method is able to work with a limited amount of information per article. We have tested the performance of our proposal using human validation and two evaluation strategies, achieving good results in both of them. Concerning the first strategy, we performed two surveys to determine the performance of our model. For all the categories that were studied, precision was always greater than 0.6, while accuracy was always greater than 0.8. The second strategy also showed good results, achieving a precision of 1.0 for one category and scoring over 0.7 points overall.

ISW-LM: An intensive symptom weight learning mechanism for early COVID-19 diagnosis

The novel coronavirus disease 2019 (COVID-19) pandemic has severely impacted the world. The early diagnosis of COVID-19 and self-isolation can help curb the spread of the virus. Besides, a simple and accurate diagnostic method can help in making rapid decisions for the treatment and isolation of patients. The analysis of patient characteristics, case trajectory, comorbidities, symptoms, diagnosis, and outcomes will be performed in the model. In this paper, a symptom-based machine learning (ML) model with a new learning mechanism called Intensive Symptom Weight Learning Mechanism (ISW-LM) is proposed. The proposed model designs three new symptoms' weight functions to identify the most relevant symptoms used to diagnose and classify COVID-19. To verify the efficiency of the proposed model, multiple laboratory and clinical datasets containing epidemiological symptoms and blood tests are used. Experiments indicate that the importance of COVID-19 infection symptoms varies between countries and regions. In most datasets, the most frequent and significant predictive symptoms for diagnosing COVID-19 are fever, sore throat, and cough. The experiment also compares the state-of-the-art methods with the proposed method, which shows that the proposed model has a high accuracy rate of up to 97.1711%. The positive results indicate that the proposed learning mechanism can help clinicians quickly diagnose and screen patients for COVID-19 at an early stage.

Combating COVID-19 Using Generative Adversarial Networks and Artificial Intelligence for Medical Images: Scoping Review

BACKGROUND

Research on the diagnosis of COVID-19 using lung images is limited by the scarcity of imaging data. Generative adversarial networks (GANs) are popular for synthesis and data augmentation. GANs have been explored for data augmentation to enhance the performance of artificial intelligence (AI) methods for the diagnosis of COVID-19 within lung computed tomography (CT) and X-ray images. However, the role of GANs in overcoming data scarcity for COVID-19 is not well understood.

OBJECTIVE

This review presents a comprehensive study on the role of GANs in addressing the challenges related to COVID-19 data scarcity and diagnosis. It is the first review that summarizes different GAN methods and lung imaging data sets for COVID-19. It attempts to answer the questions related to applications of GANs, popular GAN architectures, frequently used image modalities, and the availability of source code.

METHODS

A search was conducted on 5 databases, namely PubMed, IEEEXplore, Association for Computing Machinery (ACM) Digital Library, Scopus, and Google Scholar. The search was conducted from October 11-13, 2021. The search was conducted using intervention keywords, such as "generative adversarial networks" and "GANs," and application keywords, such as "COVID-19" and "coronavirus." The review was performed following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews (PRISMA-ScR) guidelines for systematic and scoping reviews. Only those studies were included that reported GAN-based methods for analyzing chest X-ray images, chest CT images, and chest ultrasound images. Any studies that used deep learning methods but did not use GANs were excluded. No restrictions were imposed on the country of publication, study design, or outcomes. Only those studies that were in English and were published from 2020 to 2022 were included. No studies before 2020 were included.

RESULTS

This review included 57 full-text studies that reported the use of GANs for different applications in COVID-19 lung imaging data. Most of the studies (n=42, 74%) used GANs for data augmentation to enhance the performance of AI techniques for COVID-19 diagnosis. Other popular applications of GANs were segmentation of lungs and superresolution of lung images. The cycleGAN and the conditional GAN were the most commonly used architectures, used in 9 studies each. In addition, 29 (51%) studies used chest X-ray images, while 21 (37%) studies used CT images for the training of GANs. For the majority of the studies (n=47, 82%), the experiments were conducted and results were reported using publicly available data. A secondary evaluation of the results by radiologists/clinicians was reported by only 2 (4%) studies.

CONCLUSIONS

Studies have shown that GANs have great potential to address the data scarcity challenge for lung images in COVID-19. Data synthesized with GANs have been helpful to improve the training of the convolutional neural network (CNN) models trained for the diagnosis of COVID-19. In addition, GANs have also contributed to enhancing the CNNs' performance through the superresolution of the images and segmentation. This review also identified key limitations of the potential transformation of GAN-based methods in clinical applications.

A COVID-19 CXR image recognition method based on MSA-DDCovidNet

Currently, coronavirus disease 2019 (COVID-19) has not been contained. It is a safe and effective way to detect infected persons in chest X-ray (CXR) images based on deep learning methods. To solve the above problem, the dual-path multi-scale fusion (DMFF) module and dense dilated depth-wise separable (D3S) module are used to extract shallow and deep features, respectively. Based on these two modules and multi-scale spatial attention (MSA) mechanism, a lightweight convolutional neural network model, MSA-DDCovidNet, is designed. Experimental results show that the accuracy of the MSA-DDCovidNet model on COVID-19 CXR images is as high as 97.962%, In addition, the proposed MSA-DDCovidNet has less computation complexity and fewer parameter numbers. Compared with other methods, MSA-DDCovidNet can help diagnose COVID-19 more quickly and accurately.

Global User-Level Perception of COVID-19 Contact Tracing Applications: Data-Driven Approach Using Natural Language Processing

BACKGROUND

Contact tracing has been globally adopted in the fight to control the infection rate of COVID-19. To this aim, several mobile apps have been developed. However, there are ever-growing concerns over the working mechanism and performance of these applications. The literature already provides some interesting exploratory studies on the community's response to the applications by analyzing information from different sources, such as news and users' reviews of the applications. However, to the best of our knowledge, there is no existing solution that automatically analyzes users' reviews and extracts the evoked sentiments. We believe such solutions combined with a user-friendly interface can be used as a rapid surveillance tool to monitor how effective an application is and to make immediate changes without going through an intense participatory design method.

OBJECTIVE

In this paper, we aim to analyze the efficacy of AI and NLP techniques for automatically extracting and classifying the polarity of users' sentiments by proposing a sentiment analysis framework to automatically analyze users' reviews on COVID-19 contact tracing mobile apps. We also aim to provide a large-scale annotated benchmark data set to facilitate future research in the domain. As a proof of concept, we also developed a web application based on the proposed solutions, which is expected to help the community quickly analyze the potential of an application in the domain.

METHODS

We propose a pipeline starting from manual annotation via a crowd-sourcing study and concluding with the development and training of artificial intelligence (AI) models for automatic sentiment analysis of users' reviews. In detail, we collected and annotated a large-scale data set of user reviews on COVID-19 contact tracing applications. We used both classical and deep learning methods for classification experiments.

RESULTS

We used 8 different methods on 3 different tasks, achieving up to an average F1 score of 94.8%, indicating the feasibility of the proposed solution. The crowd-sourcing activity resulted in a large-scale benchmark data set composed of 34,534 manually annotated reviews.

CONCLUSIONS

The existing literature mostly relies on the manual or exploratory analysis of users' reviews on applications, which is tedious and time-consuming. In existing studies, generally, data from fewer applications are analyzed. In this work, we showed that AI and natural language processing techniques provide good results for analyzing and classifying users' sentiments' polarity and that automatic sentiment analysis can help to analyze users' responses more accurately and quickly. We also provided a large-scale benchmark data set. We believe the presented analysis, data set, and proposed solutions combined with a user-friendly interface can be used as a rapid surveillance tool to analyze and monitor mobile apps deployed in emergency situations leading to rapid changes in the applications without going through an intense participatory design method.

A Generic Deep Learning Based Cough Analysis System From Clinically Validated Samples for Point-of-Need Covid-19 Test and Severity Levels

In an attempt to reduce the infection rate of the COrona VIrus Disease-19 (Covid-19) countries around the world have echoed the exigency for an economical, accessible, point-of-need diagnostic test to identify Covid-19 carriers so that they (individuals who test positive) can be advised to self isolate rather than the entire community. Availability of a quick turn-around time diagnostic test would essentially mean that life, in general, can return to normality-at-large. In this regards, studies concurrent in time with ours have investigated different respiratory sounds, including cough, to recognise potential Covid-19 carriers. However, these studies lack clinical control and rely on Internet users confirming their test results in a web questionnaire (crowdsourcing) thus rendering their analysis inadequate. We seek to evaluate the detection performance of a primary screening tool of Covid-19 solely based on the cough sound from 8,380 clinically validated samples with laboratory molecular-test (2,339 Covid-19 positive and 6,041 Covid-19 negative) under quantitative RT-PCR (qRT-PCR) from certified laboratories. All collected samples were clinically labelled, i.e., Covid-19 positive or negative, according to the results in addition to the disease severity based on the qRT-PCR threshold cycle (Ct) and lymphocytes count from the patients. Our proposed generic method is an algorithm based on Empirical Mode Decomposition (EMD) for cough sound detection with subsequent classification based on a tensor of audio sonographs and deep artificial neural network classifier with convolutional layers called 'DeepCough'. Two different versions of DeepCough based on the number of tensor dimensions, i.e., DeepCough2D and DeepCough3D, have been investigated. These methods have been deployed in a multi-platform prototype web-app 'CoughDetect'. Covid-19 recognition results rates achieved a promising AUC (Area Under Curve) of [Formula: see text] 98 . 80 % ± 0 . 83 % , sensitivity of [Formula: see text] 96 . 43 % ± 1 . 85 % , and specificity of [Formula: see text] 96 . 20 % ± 1 . 74 % and average AUC of [Formula: see text] 81 . 08 % ± 5 . 05 % for the recognition of three severity levels. Our proposed web tool as a point-of-need primary diagnostic test for Covid-19 facilitates the rapid detection of the infection. We believe it has the potential to significantly hamper the Covid-19 pandemic across the world.

Real-Time Face Mask Detection to Ensure COVID-19 Precautionary Measures in the Developing Countries

Recently, the rapid transmission of Coronavirus 2019 (COVID-19) is causing a significant health crisis worldwide. The World Health Organization (WHO) issued several guidelines for protection against the spreading of COVID-19. According to the WHO, the most effective preventive measure against COVID-19 is wearing a mask in public and crowded areas. It is quite difficult to manually monitor and determine people with masks and no masks. In this paper, different deep learning architectures were used for better results evaluations. After extensive experimentation, we selected a custom model having the best performance to identify whether people wear a face mask or not and allowing an easy deployment on a small device such as a Jetson Nano. The experimental evaluation is performed on the custom dataset that is developed from the website (See data collection section) after applying different masks on those images. The proposed model in comparison with other methods produced higher accuracy (99% for training accuracy and 99% for validation accuracy). Moreover, the proposed method can be deployed on resource-constrained devices.

A novel multi-modal depression detection approach based on mobile crowd sensing and task-based mechanisms

Depression has become a global concern, and COVID-19 also has caused a big surge in its incidence. Broadly, there are two primary methods of detecting depression: Task-based and Mobile Crowd Sensing (MCS) based methods. These two approaches, when integrated, can complement each other. This paper proposes a novel approach for depression detection that combines real-time MCS and task-based mechanisms. We aim to design an end-to-end machine learning pipeline, which involves multimodal data collection, feature extraction, feature selection, fusion, and classification to distinguish between depressed and non-depressed subjects. For this purpose, we created a real-world dataset of depressed and non-depressed subjects. We experimented with: various features from multi-modalities, feature selection techniques, fused features, and machine learning classifiers such as Logistic Regression, Support Vector Machines (SVM), etc. for classification. Our findings suggest that combining features from multiple modalities perform better than any single data modality, and the best classification accuracy is achieved when features from all three data modalities are fused. Feature selection method based on Pearson's correlation coefficients improved the accuracy in comparison with other methods. Also, SVM yielded the best accuracy of 86%. Our proposed approach was also applied on benchmarking dataset, and results demonstrated that the multimodal approach is advantageous in performance with state-of-the-art depression recognition techniques.

Design of a modular DSS for public health decision-making in the context of a COVID-19 pandemic landscape

The awareness of the occurrence of a new disease involves much uncertainty and the search for answers and also appropriate questions. In this paper we focus on the perspective of public health decision-makers. Typically, they would have a standard set of questions and supporting metrics that have been found in previous disease outbreaks to be useful in assessing the effectiveness of various 'solution' methods on the trajectory of the disease. There may be other relevant questions with which such public health domain experts may not be familiar and/or for which they are familiar but are not aware of methods for addressing such questions when there is limited data. Decision Support Systems (DSS) can be used to facilitate the exploration of established questions and some other relevant questions. Given an initial set of questions, the DSS designer should consider which sets of data analytic methods have the capabilities to adequately address. Some of these data analytic methods may also have the capability of addressing questions that could be of interest to the public health decision makers including researchers. In this paper we present a conceptual design for a relevant easy-to-construct DSS and an example of a multi-method DSS that is based on this conceptual design. Using publicly available data on the CoViD-19 pandemic, we illustrate benefits of the multi-method DSS in action.

A framework for information technology-based management against COVID-19 in Iran

BACKGROUND

The COVID-19 pandemic has become a global concern. Iran is one of the countries affected most by the SARS-CoV-2 outbreak. As a result, the use of information technology (IT) has a variety of applications for pandemic management. The purpose of this study was to develop a conceptual framework for responding to the COVID-19 pandemic via IT management, based on extensive literature review and expert knowledge.

METHODS

The conceptual framework is developed in three stages: (1) a literature review to gather practical experience with IT applications for managing the COVID-19 pandemic, (2) a study of Iranian documents and papers that present Iran's practical experience with COVID-19, and (3) developing a conceptual framework based on the previous steps and validating it through a Delphi approach in two rounds, and by 13 experts.

RESULTS

The proposed conceptual framework demonstrates that during pandemics, 22 different types of technologies were used for various purposes, including virtual education, early warning, rapid screening and diagnosis of infected individuals, and data management. These objectives were classified into six categories, with the following applications highlighted: (1) Prevention (M-health, Internet search queries, telehealth, robotics, Internet of things (IoT), Artificial Intelligence (AI), big data, Virtual Reality (VR), social media); (2) Diagnosis (M-health, drones, telehealth, IoT, Robotics, AI, Decision Support System (DSS), Electronic Health Record (EHR)); (3) Treatment (Telehealth, M-health, AI, Robotic, VR, IoT); (4) Follow-up (Telehealth, M-health, VR), (5) Management & planning (Geographic information system, M-health, IoT, blockchain), and (6) Protection (IoT, AI, Robotic and automatic vehicles, Augmented Reality (AR)). In Iran, the use of IT for prevention has been emphasized through M-health, internet search queries, social media, video conferencing, management and planning objectives using databases, health information systems, dashboards, surveillance systems, and vaccine coverage.

CONCLUSIONS

IT capabilities were critical during the COVID-19 outbreak. Practical experience demonstrates that various aspects of information technologies were overlooked. To combat this pandemic, the government and decision-makers of this country should consider strategic planning that incorporates successful experiences against COVID-19 and the most advanced IT capabilities.

Predicting SARS-CoV-2 infection duration at hospital admission:a deep learning solution

COVID-19 cases are increasing around the globe with almost 5 million of deaths. We propose here a deep learning model capable of predicting the duration of the infection by means of information available at hospital admission. A total of 222 patients were enrolled in our observational study. Anagraphical and anamnestic data, COVID-19 signs and symptoms, COVID-19 therapy, hematochemical test results, and prior therapies administered to patients are used as predictors. A set of 55 features, all of which can be taken in the first hours of the patient's hospitalization, was considered. Different solutions were compared achieving the best performance with a sequential convolutional neural network-based model merged in an ensemble with two different meta-learners linked in cascade. We obtained a median absolute error of 2.7 days (IQR = 3.0) in predicting the duration of the infection; the error was equally distributed in the infection duration range. This tool could preemptively give an outlook of the COVID-19 patients' expected path and the associated hospitalization effort. The proposed solution could be viable in tackling the huge burden and the logistics complexity of hospitals or rehabilitation centers during the pandemic waves. With data taken ad admission, entering a PCA-based feature selection, a k-fold cross-validated CNN-based model was implemented. After external texting, a median absolute error of 2.7 days [IQR = 3 days].

Data science approaches to confronting the COVID-19 pandemic: a narrative review

During the COVID-19 pandemic, more than ever, data science has become a powerful weapon in combating an infectious disease epidemic and arguably any future infectious disease epidemic. Computer scientists, data scientists, physicists and mathematicians have joined public health professionals and virologists to confront the largest pandemic in the century by capitalizing on the large-scale 'big data' generated and harnessed for combating the COVID-19 pandemic. In this paper, we review the newly born data science approaches to confronting COVID-19, including the estimation of epidemiological parameters, digital contact tracing, diagnosis, policy-making, resource allocation, risk assessment, mental health surveillance, social media analytics, drug repurposing and drug development. We compare the new approaches with conventional epidemiological studies, discuss lessons we learned from the COVID-19 pandemic, and highlight opportunities and challenges of data science approaches to confronting future infectious disease epidemics. This article is part of the theme issue 'Data science approaches to infectious disease surveillance'.

SymptomID: A Framework for Rapid Symptom Identification in Pandemics Using News Reports

The ability to quickly learn fundamentals about a new infectious disease, such as how it is transmitted, the incubation period, and related symptoms, is crucial in any novel pandemic. For instance, rapid identification of symptoms can enable interventions for dampening the spread of the disease. Traditionally, symptoms are learned from research publications associated with clinical studies. However, clinical studies are often slow and time intensive, and hence delays can have dire consequences in a rapidly spreading pandemic like we have seen with COVID-19. In this article, we introduce SymptomID, a modular artificial intelligence–based framework for rapid identification of symptoms associated with novel pandemics using publicly available news reports. SymptomID is built using the state-of-the-art natural language processing model (Bidirectional Encoder Representations for Transformers) to extract symptoms from publicly available news reports and cluster-related symptoms together to remove redundancy. Our proposed framework requires minimal training data, because it builds on a pre-trained language model. In this study, we present a case study of SymptomID using news articles about the current COVID-19 pandemic. Our COVID-19 symptom extraction module, trained on 225 articles, achieves an F1 score of over 0.8. SymptomID can correctly identify well-established symptoms (e.g., “fever” and “cough”) and less-prevalent symptoms (e.g., “rashes,” “hair loss,” “brain fog”) associated with the novel coronavirus. We believe this framework can be extended and easily adapted in future pandemics to quickly learn relevant insights that are fundamental for understanding and combating a new infectious disease.

Data-Driven Analytics Leveraging Artificial Intelligence in the Era of COVID-19: An Insightful Review of Recent Developments

This paper presents the role of artificial intelligence (AI) and other latest technologies that were employed to fight the recent pandemic (i.e., novel coronavirus disease-2019 (COVID-19)). These technologies assisted the early detection/diagnosis, trends analysis, intervention planning, healthcare burden forecasting, comorbidity analysis, and mitigation and control, to name a few. The key-enablers of these technologies was data that was obtained from heterogeneous sources (i.e., social networks (SN), internet of (medical) things (IoT/IoMT), cellular networks, transport usage, epidemiological investigations, and other digital/sensing platforms). To this end, we provide an insightful overview of the role of data-driven analytics leveraging AI in the era of COVID-19. Specifically, we discuss major services that AI can provide in the context of COVID-19 pandemic based on six grounds, (i) AI role in seven different epidemic containment strategies (a.k.a non-pharmaceutical interventions (NPIs)), (ii) AI role in data life cycle phases employed to control pandemic via digital solutions, (iii) AI role in performing analytics on heterogeneous types of data stemming from the COVID-19 pandemic, (iv) AI role in the healthcare sector in the context of COVID-19 pandemic, (v) general-purpose applications of AI in COVID-19 era, and (vi) AI role in drug design and repurposing (e.g., iteratively aligning protein spikes and applying three/four-fold symmetry to yield a low-resolution candidate template) against COVID-19. Further, we discuss the challenges involved in applying AI to the available data and privacy issues that can arise from personal data transitioning into cyberspace. We also provide a concise overview of other latest technologies that were increasingly applied to limit the spread of the ongoing pandemic. Finally, we discuss the avenues of future research in the respective area. This insightful review aims to highlight existing AI-based technological developments and future research dynamics in this area.

D2-CovidNet: A Deep Learning Model for COVID-19 Detection in Chest X-Ray Images

Since the outbreak of Coronavirus disease 2019 (COVID-19), it has been spreading rapidly worldwide and has not yet been effectively controlled. Many researchers are studying novel Coronavirus pneumonia from chest X-ray images. In order to improve the detection accuracy, two modules sensitive to feature information, dual-path multiscale feature fusion module and dense depthwise separable convolution module, are proposed. Based on these two modules, a lightweight convolutional neural network model, D2-CovidNet, is designed to assist experts in diagnosing COVID-19 by identifying chest X-ray images. D2-CovidNet is tested on two public data sets, and its classification accuracy, precision, sensitivity, specificity, and F1-score are 94.56%, 95.14%, 94.02%, 96.61%, and 95.30%, respectively. Specifically, the precision, sensitivity, and specificity of the network for COVID-19 are 98.97%, 94.12%, and 99.84%, respectively. D2-CovidNet has fewer computation number and parameter number. Compared with other methods, D2-CovidNet can help diagnose COVID-19 more quickly and accurately.

A Hybrid Convolutional Neural Network Model for Diagnosis of COVID-19 Using Chest X-ray Images

COVID-19 declared as a pandemic that has a faster rate of infection and has impacted the lives and the country's economy due to forced lockdowns. Its detection using RT-PCR is required long time and due to which its infection has grown exponentially. This creates havoc for the shortage of testing kits in many countries. This work has proposed a new image processing-based technique for the health care systems named "C19D-Net", to detect "COVID-19" infection from "Chest X-Ray" (XR) images, which can help radiologists to improve their accuracy of detection COVID-19. The proposed system extracts deep learning (DL) features by applying the InceptionV4 architecture and Multiclass SVM classifier to classify and detect COVID-19 infection into four different classes. The dataset of 1900 Chest XR images has been collected from two publicly accessible databases. Images are pre-processed with proper scaling and regular feeding to the proposed model for accuracy attainments. Extensive tests are conducted with the proposed model ("C19D-Net") and it has succeeded to achieve the highest COVID-19 detection accuracy as 96.24% for 4-classes, 95.51% for three-classes, and 98.1% for two-classes. The proposed method has outperformed well in expressions of "precision", "accuracy", "F1-score" and "recall" in comparison with most of the recent previously published methods. As a result, for the present situation of COVID-19, the proposed "C19D-Net" can be employed in places where test kits are in short supply, to help the radiologists to improve their accuracy of detection of COVID-19 patients through XR-Images.

Computer Audition for Fighting the SARS-CoV-2 Corona Crisis-Introducing the Multitask Speech Corpus for COVID-19

Computer audition (CA) has experienced a fast development in the past decades by leveraging advanced signal processing and machine learning techniques. In particular, for its noninvasive and ubiquitous character by nature, CA-based applications in healthcare have increasingly attracted attention in recent years. During the tough time of the global crisis caused by the coronavirus disease 2019 (COVID-19), scientists and engineers in data science have collaborated to think of novel ways in prevention, diagnosis, treatment, tracking, and management of this global pandemic. On the one hand, we have witnessed the power of 5G, Internet of Things, big data, computer vision, and artificial intelligence in applications of epidemiology modeling, drug and/or vaccine finding and designing, fast CT screening, and quarantine management. On the other hand, relevant studies in exploring the capacity of CA are extremely lacking and underestimated. To this end, we propose a novel multitask speech corpus for COVID-19 research usage. We collected 51 confirmed COVID-19 patients' in-the-wild speech data in Wuhan city, China. We define three main tasks in this corpus, i.e., three-category classification tasks for evaluating the physical and/or mental status of patients, i.e., sleep quality, fatigue, and anxiety. The benchmarks are given by using both classic machine learning methods and state-of-the-art deep learning techniques. We believe this study and corpus cannot only facilitate the ongoing research on using data science to fight against COVID-19, but also the monitoring of contagious diseases for general purpose.

Factoring ethics in management algorithms for municipal information-analytical systems

The discourse on the ethics of artificial intelligence (AI) has generated a plethora of different conventions, principles and guidelines outlining an ethical perspective on the use and research of AI. However, when it comes to breaking down general implications to specific use cases, existent frameworks have been remaining vague. The following paper aims to fill this gap by examining the ethical implications of the use of information analytical systems through a management approach for filtering the content in social media and preventing information thrusts with negative consequences for human beings and public administration. The ethical dimensions of AI technologies are revealed through deduction of general challenges of digital governance to applied level management technics.

Machine Learning: New Ideas and Tools in Environmental Science and Engineering

The rapid increase in both the quantity and complexity of data that are being generated daily in the field of environmental science and engineering (ESE) demands accompanied advancement in data analytics. Advanced data analysis approaches, such as machine learning (ML), have become indispensable tools for revealing hidden patterns or deducing correlations for which conventional analytical methods face limitations or challenges. However, ML concepts and practices have not been widely utilized by researchers in ESE. This feature explores the potential of ML to revolutionize data analysis and modeling in the ESE field, and covers the essential knowledge needed for such applications. First, we use five examples to illustrate how ML addresses complex ESE problems. We then summarize four major types of applications of ML in ESE: making predictions; extracting feature importance; detecting anomalies; and discovering new materials or chemicals. Next, we introduce the essential knowledge required and current shortcomings in ML applications in ESE, with a focus on three important but often overlooked components when applying ML: correct model development, proper model interpretation, and sound applicability analysis. Finally, we discuss challenges and future opportunities in the application of ML tools in ESE to highlight the potential of ML in this field.

Modelling and optimal control of multi strain epidemics, with application to COVID-19

Reinfection and multiple viral strains are among the latest challenges in the current COVID-19 pandemic. In contrast, epidemic models often consider a single strain and perennial immunity. To bridge this gap, we present a new epidemic model that simultaneously considers multiple viral strains and reinfection due to waning immunity. The model is general, applies to any viral disease and includes an optimal control formulation to seek a trade-off between the societal and economic costs of mitigation. We validate the model, with and without mitigation, in the light of the COVID-19 epidemic in England and in the state of Amazonas, Brazil. The model can derive optimal mitigation strategies for any number of viral strains, whilst also evaluating the effect of distinct mitigation costs on the infection levels. The results show that relaxations in the mitigation measures cause a rapid increase in the number of cases, and therefore demand more restrictive measures in the future.

Data Empowerment of Decision-Makers in an Era of a Pandemic: Intersection of "Classic" and Artificial Intelligence in the Service of Medicine

BACKGROUND

The COVID-19 outbreak required prompt action by health authorities around the world in response to a novel threat. With enormous amounts of information originating in sources with uncertain degree of validation and accuracy, it is essential to provide executive-level decision-makers with the most actionable, pertinent, and updated data analysis to enable them to adapt their strategy swiftly and competently.

OBJECTIVE

We report here the origination of a COVID-19 dedicated response in the Israel Defense Forces with the assembly of an operational Data Center for the Campaign against Coronavirus.

METHODS

Spearheaded by directors with clinical, operational, and data analytics orientation, a multidisciplinary team utilized existing and newly developed platforms to collect and analyze large amounts of information on an individual level in the context of SARS-CoV-2 contraction and infection.

RESULTS

Nearly 300,000 responses to daily questionnaires were recorded and were merged with other data sets to form a unified data lake. By using basic as well as advanced analytic tools ranging from simple aggregation and display of trends to data science application, we provided commanders and clinicians with access to trusted, accurate, and personalized information and tools that were designed to foster operational changes and mitigate the propagation of the pandemic. The developed tools aided in the in the identification of high-risk individuals for severe disease and resulted in a 30% decline in their attendance to their units. Moreover, the queue for laboratory examination for COVID-19 was optimized using a predictive model and resulted in a high true-positive rate of 20%, which is more than twice as high as the baseline rate (2.28%, 95% CI 1.63%-3.19%).

CONCLUSIONS

In times of ambiguity and uncertainty, along with an unprecedented flux of information, health organizations may find multidisciplinary teams working to provide intelligence from diverse and rich data a key factor in providing executives relevant and actionable support for decision-making.

COVID-19 digital contact tracing applications and techniques: A review post initial deployments

The coronavirus disease 2019 (COVID-19) is a severe global pandemic that has claimed millions of lives and continues to overwhelm public health systems in many countries. The spread of COVID-19 pandemic has negatively impacted the human mobility patterns such as daily transportation-related behavior of the public. There is a requirement to understand the disease spread patterns and its routes among neighboring individuals for the timely implementation of corrective measures at the required placement. To increase the effectiveness of contact tracing, countries across the globe are leveraging advancements in mobile technology and Internet of Things (IoT) to aid traditional manual contact tracing to track individuals who have come in close contact with identified COVID-19 patients. Even as the first administration of vaccines begins in 2021, the COVID-19 management strategy will continue to be multi-pronged for the foreseeable future with digital contact tracing being a vital component of the response along with the use of preventive measures such as social distancing and the use of face masks. After some months of deployment of digital contact tracing technology, deeper insights into the merits of various approaches and the usability, privacy, and ethical trade-offs involved are emerging. In this paper, we provide a comprehensive analysis of digital contact tracing solutions in terms of their methodologies and technologies in the light of the new data emerging about international experiences of deployments of digital contact tracing technology. We also provide a discussion on open challenges such as scalability, privacy, adaptability and highlight promising directions for future work.

Combating the Infodemic: A Chinese Infodemic Dataset for Misinformation Identification

Misinformation posted on social media during COVID-19 is one main example of infodemic data. This phenomenon was prominent in China when COVID-19 happened at the beginning. While a lot of data can be collected from various social media platforms, publicly available infodemic detection data remains rare and is not easy to construct manually. Therefore, instead of developing techniques for infodemic detection, this paper aims at constructing a Chinese infodemic dataset, "infodemic 2019", by collecting widely spread Chinese infodemic during the COVID-19 outbreak. Each record is labeled as true, false or questionable. After a four-time adjustment, the original imbalanced dataset is converted into a balanced dataset by exploring the properties of the collected records. The final labels achieve high intercoder reliability with healthcare workers' annotations and the high-frequency words show a strong relationship between the proposed dataset and pandemic diseases. Finally, numerical experiments are carried out with RNN, CNN and fastText. All of them achieve reasonable performance and present baselines for future works.

Applications of Artificial Intelligence, Machine Learning, Big Data and the Internet of Things to the COVID-19 Pandemic: A Scientometric Review Using Text Mining

The COVID-19 pandemic has wreaked havoc in every country in the world, with serious health-related, economic, and social consequences. Since its outbreak in March 2020, many researchers from different fields have joined forces to provide a wide range of solutions, and the support for this work from artificial intelligence (AI) and other emerging concepts linked to intelligent data analysis has been decisive. The enormous amount of research and the high number of publications during this period makes it difficult to obtain an overall view of the different applications of AI to the management of COVID-19 and an understanding of how research in this field has been evolving. Therefore, in this paper, we carry out a scientometric analysis of this area supported by text mining, including a review of 18,955 publications related to AI and COVID-19 from the Scopus database from March 2020 to June 2021 inclusive. For this purpose, we used VOSviewer software, which was developed by researchers at Leiden University in the Netherlands. This allowed us to examine the exponential growth in research on this issue and its distribution by country, and to highlight the clear hegemony of the United States (USA) and China in this respect. We used an automatic process to extract topics of research interest and observed that the most important current lines of research focused on patient-based solutions. We also identified the most relevant journals in terms of the COVID-19 pandemic, demonstrated the growing value of open-access publication, and highlighted the most influential authors by means of an analysis of citations and co-citations. This study provides an overview of the current status of research on the application of AI to the pandemic.

Predicting the Intention to Donate Blood among Blood Donors Using a Decision Tree Algorithm

The blood donation process is essential for health systems. Therefore, the ability to predict donor flow has become relevant for hospitals. Although it is possible to predict this behaviour intention from donor questionnaires, the need to reduce social contact in pandemic settings leads to decreasing the extension of these surveys with the minimum loss of predictivity. In this context, this study aims to predict the intention to give blood again, among donors, based on a limited number of attributes. This research uses data science and learning concepts based on symmetry in a particular classification to predict blood donation intent. We carried out a face-to-face survey of Chilean donors based on the Theory of Planned Behaviour. These data, including control variables, were analysed using the decision tree technique. The results indicate that it is possible to predict the intention to donate blood again with an accuracy of 84.17% and minimal variables. The added scientific value of this article is to propose a more simplified way of measuring a multi-determined social phenomenon, such as the intention to donate blood again and the application of the decision tree technique to achieve this simplification, thereby contributing to the field of data science.

Nanomaterial-based drug delivery systems as promising carriers for patients with COVID-19

Once the World Health Organization (WHO) declared the COVID-19 outbreak to be pandemic, massive efforts have been launched by researchers around the globe to combat this emerging infectious disease. Here we review the most recent data on the novel SARS-CoV-2 pathogen. We analyzed its etiology, pathogenesis, diagnosis, prevention, and current medications. After that, we summarized the promising drug delivery application of nanomaterial-based systems. Their preparation routes, unique advantages over the traditional drug delivery routes and their toxicity though risk analysis were also covered. We also discussed in detail the mechanism of action for one example of drug-loaded nanomaterial drug delivery systems (Avigan-contained nano-emulsions). This review provides insights about employing nanomaterial-based drug delivery systems for the treatment of COVID-19 to increase the bioavailability of current drugs, reducing their toxicity, and to increase their efficiency.