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Zhao T, Zhang X, Cui X, Su S, Li L, Chen Y, Wang N, Sun L, Zhao J, Zhang J, Han X, Cao J. Inhibiting the IRAK4/NF-κB/NLRP3 signaling pathway can reduce pyroptosis in hippocampal neurons and seizure episodes in epilepsy. Exp Neurol 2024; 377:114794. [PMID: 38685307 DOI: 10.1016/j.expneurol.2024.114794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 04/15/2024] [Accepted: 04/20/2024] [Indexed: 05/02/2024]
Abstract
BACKGROUND Interleukin-1 receptor-associated kinase 4 (IRAK4) plays an important role in immune modulation in various central nervous system disorders. However, IRAK4 has not been reported in epilepsy models in animal and clinical studies, nor has its involvement in regulating pyroptosis in epilepsy. METHOD First, we performed transcriptome sequencing, quantitative real-time polymerase chain reaction, and western blot analysis on the hippocampal tissues of refractory epilepsy patients to measure the mRNA and protein levels of IRAK4 and pyroptosis-related proteins. Second, we successfully established a pentylenetetrazol (PTZ)-induced seizure mouse model. We conducted behavioral tests, electroencephalography, virus injection, and molecular biology experiments to investigate the role of IRAK4 in seizure activity regulation. RESULTS IRAK4 is upregulated in the hippocampus of epilepsy patients and PTZ-induced seizure model mice. IRAK4 expression is observed in the hilar neurons of PTZ-induced mice. Knocking down IRAK4 in PTZ-induced mice downregulated pyroptosis-related protein expression and alleviated seizure activity. Overexpressing IRAK4 in naive mice upregulated pyroptosis-related protein expression and increased PTZ-induced abnormal neuronal discharges. IRAK4 and NF-κB were found to bind to each other in patient hippocampal tissue samples. Pyrrolidine dithiocarbamate reversed the pyroptosis-related protein expression increase caused by PTZ. PF-06650833 alleviated seizure activity and inhibited pyroptosis in PTZ-induced seizure mice. CONCLUSION IRAK4 plays a key role in the pathological process of epilepsy, and its potential mechanism may be related to pyroptosis mediated by the NF-κB/NLRP3 signaling pathway. PF-06650833 has potential as a therapeutic agent for alleviating epilepsy.
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Affiliation(s)
- Ting Zhao
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Xuefei Zhang
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Xiaoxiao Cui
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Songxue Su
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Lei Li
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Yanan Chen
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Na Wang
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Lei Sun
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China
| | - Jianyuan Zhao
- Institute for Developmental and Regenerative Cardiovascular Medicine, MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200092, China.
| | - Jiewen Zhang
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China.
| | - Xiong Han
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China.
| | - Jing Cao
- Department of Neurology and Basic Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan 450000, China.
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Skaria S, Savithriamma SK. Automatic classification of seizure and seizure-free EEG signals based on phase space reconstruction features. J Biol Phys 2024; 50:181-196. [PMID: 38466526 PMCID: PMC11106053 DOI: 10.1007/s10867-024-09654-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Accepted: 02/16/2024] [Indexed: 03/13/2024] Open
Abstract
Epilepsy is a type of brain disorder triggered by an abrupt electrical imbalance of neuronal networks. An electroencephalogram (EEG) is a diagnostic tool to capture the underlying brain mechanisms and detect seizure onset in epileptic patients. To detect seizures, neurologists need to manually monitor EEG recordings for long periods, which is challenging and susceptible to errors depending on expertise and experience. Therefore, automatic identification of seizure and seizure-free EEG signals becomes essential. This study introduces a method based on the features extracted from the phase space reconstruction for classifying seizure and seizure-free EEG signals. The computed features are derived from the elliptical area and interquartile range of the Euclidean distance by varying percentage values of data points ranging from 50 to 100%. We consider two public datasets and evaluate these features in each EEG epoch that includes the healthy, interictal, preictal, and ictal stages of epileptic subjects, utilizing the K-nearest neighbor classifier for classification. Results show that the features have higher values during the seizure than the seizure-free EEG signals and healthy subjects. Furthermore, the proposed features can effectively discriminate seizure EEG signals from the seizure-free and normal subjects with 100% accuracy, sensitivity, and specificity in both datasets. Likewise, the classification between the preictal stage and seizure EEG signals attains 98% accuracy. Overall, the reconstructed phase space features significantly enhance the accuracy of detecting epileptic EEG signals compared with existing methods. This advancement holds great potential in assisting neurologists in swiftly and accurately diagnosing epileptic seizures from EEG signals.
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Affiliation(s)
- Shervin Skaria
- Department of Physics, Government College Kottayam, Nattakom, Kerala, India
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3
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Shama DM, Jing J, Venkataraman A. DeepSOZ: A Robust Deep Model for Joint Temporal and Spatial Seizure Onset Localization from Multichannel EEG Data. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION : MICCAI ... INTERNATIONAL CONFERENCE ON MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION 2023; 2023:184-194. [PMID: 39526288 PMCID: PMC11545985 DOI: 10.1007/978-3-031-43993-3_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
We propose a robust deep learning framework to simultaneously detect and localize seizure activity from multichannel scalp EEG. Our model, called DeepSOZ, consists of a transformer encoder to generate global and channel-wise encodings. The global branch is combined with an LSTM for temporal seizure detection. In parallel, we employ attention-weighted multi-instance pooling of channel-wise encodings to predict the seizure onset zone. DeepSOZ is trained in a supervised fashion and generates high-resolution predictions on the order of each second (temporal) and EEG channel (spatial). We validate DeepSOZ via bootstrapped nested cross-validation on a large dataset of 120 patients curated from the Temple University Hospital corpus. As compared to baseline approaches, DeepSOZ provides robust overall performance in our multi-task learning setup. We also evaluate the intra-seizure and intra-patient consistency of DeepSOZ as a first step to establishing its trustworthiness for integration into the clinical workflow for epilepsy.
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Affiliation(s)
- Deeksha M Shama
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, USA
| | - Jiasen Jing
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, USA
| | - Archana Venkataraman
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, USA
- Department of Electrical and Computer Engineering, Boston University, Boston, USA
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4
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Wijayanto I, Humairani A, Hadiyoso S, Rizal A, Prasanna DL, Tripathi SL. Epileptic seizure detection on a compressed EEG signal using energy measurement. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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5
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Jianbiao M, Xinzui W, Zhaobo L, Juan L, Zhongwei Z, Hui F. EEG signal classification of tinnitus based on SVM and sample entropy. Comput Methods Biomech Biomed Engin 2023; 26:580-594. [PMID: 35850561 DOI: 10.1080/10255842.2022.2075698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The prevalence of tinnitus is high and seriously affects the daily life of patients. As the pathogenesis of tinnitus is not yet clear, there is a lack of rapid and objective diagnostic modalities. In order to provide clinicians with an objective diagnostic approach, this paper combines time-frequency domain and non-linear power analysis to investigate the differences in the specificity of the EEG signal in tinnitus patients compared to healthy subjects. In this paper, resting-state electroencephalograms (EEG) were collected from 10 cases each of tinnitus patients and healthy subjects, and the data from the two groups were compared in the δ (0.5 - 3 .5 Hz), θ (4 - 7.5 Hz), α1 (8 - 10 Hz), α2 (10 - 12 Hz), β1 (13 - 18 Hz), β2 (18.5 - 21 Hz), β3 (21.5 - 30 Hz), and γ (30.5 - 44 Hz) bands for the differences in sample entropy values. The results of the resting state experiment revealed that the δ, α2 and β1 band samples of tinnitus patients all had greater entropy values than healthy subjects, with extremely significant differences compared to healthy subjects (p < 0.01). It is mainly concentrated in the δ band in the right parietal region of the cerebral cortex, the α2 band in the central region, and the γ band in the left prefrontal region. Finally, support vector machines combined with optimal feature combinations were used to achieve objective recognition of tinnitus disorders, with an 8.58% increase in accuracy compared to other features. Through the above study, entropy reflects the degree of chaos in the brain and the chaotic characteristics of the resting state EEG signal can characterise the onset of tinnitus, the results of which can help clinicians in the early diagnosis of tinnitus.
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Affiliation(s)
- Mai Jianbiao
- Jihua Institute of Biomedical Engineering and Technology, Ji Hua Laboratory, Foshan, Guangdong, China
- School of Electromechanical Engineering, Guangdong University of Technology, Guangzhou, Guangdong, China
| | - Wang Xinzui
- Jihua Institute of Biomedical Engineering and Technology, Ji Hua Laboratory, Foshan, Guangdong, China
| | - Li Zhaobo
- Jihua Institute of Biomedical Engineering and Technology, Ji Hua Laboratory, Foshan, Guangdong, China
| | - Liu Juan
- Jihua Institute of Biomedical Engineering and Technology, Ji Hua Laboratory, Foshan, Guangdong, China
| | - Zhang Zhongwei
- Jihua Institute of Biomedical Engineering and Technology, Ji Hua Laboratory, Foshan, Guangdong, China
| | - Fu Hui
- School of Electromechanical Engineering, Guangdong University of Technology, Guangzhou, Guangdong, China
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6
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Real-time epilepsy seizure detection based on EEG using tunable-Q wavelet transform and convolutional neural network. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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7
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Currey D, Craley J, Hsu D, Ahmed R, Venkataraman A. EPViz: A flexible and lightweight visualizer to facilitate predictive modeling for multi-channel EEG. PLoS One 2023; 18:e0282268. [PMID: 36848345 PMCID: PMC9970073 DOI: 10.1371/journal.pone.0282268] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 02/11/2023] [Indexed: 03/01/2023] Open
Abstract
Scalp Electroencephalography (EEG) is one of the most popular noninvasive modalities for studying real-time neural phenomena. While traditional EEG studies have focused on identifying group-level statistical effects, the rise of machine learning has prompted a shift in computational neuroscience towards spatio-temporal predictive analyses. We introduce a novel open-source viewer, the EEG Prediction Visualizer (EPViz), to aid researchers in developing, validating, and reporting their predictive modeling outputs. EPViz is a lightweight and standalone software package developed in Python. Beyond viewing and manipulating the EEG data, EPViz allows researchers to load a PyTorch deep learning model, apply it to EEG features, and overlay the output channel-wise or subject-level temporal predictions on top of the original time series. These results can be saved as high-resolution images for use in manuscripts and presentations. EPViz also provides valuable tools for clinician-scientists, including spectrum visualization, computation of basic data statistics, and annotation editing. Finally, we have included a built-in EDF anonymization module to facilitate sharing of clinical data. Taken together, EPViz fills a much needed gap in EEG visualization. Our user-friendly interface and rich collection of features may also help to promote collaboration between engineers and clinicians.
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Affiliation(s)
- Danielle Currey
- Department of Computer Science, Johns Hopkins University, Baltimore, MD, United States of America
| | - Jeff Craley
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, United States of America
| | - David Hsu
- Department of Neurology, University of Wisconsin Madison, Madison, WI, United States of America
| | - Raheel Ahmed
- Department of Neurosurgery, University of Wisconsin Madison, Madison, WI, United States of America
| | - Archana Venkataraman
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, United States of America
- Department of Electrical and Computer Engineering, Boston University, Boston, MA, United States of America
- * E-mail:
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8
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Xiao P, Ma K, Gu L, Huang Y, Zhang J, Duan Z, Wang G, Luo Z, Gan X, Yuan J. Inter-subject prediction of pediatric emergence delirium using feature selection and classification from spontaneous EEG signals. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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9
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Wang G, Zeng X, Lai G, Zhong G, Ma K, Zhang Y. Efficient Subject-Independent Detection of Anterior Cruciate Ligament Deficiency Based on Marine Predator Algorithm and Support Vector Machine. IEEE J Biomed Health Inform 2022; 26:4936-4947. [PMID: 35192468 DOI: 10.1109/jbhi.2022.3152846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Anterior cruciate ligament (ACL) deficiency not only reduces knee stability, but also increases the risk of more disease and impairs daily life, thus requiring efficient detection of ACL deficiency. To build an efficient subject-independent ACL deficiency detection model, this study proposes a new method called SVM-MPA that fuses marine predator algorithm (MPA) and support vector machine (SVM) for simultaneous feature selection, hyperparameter optimization and classification. 35ACL-deficient (ACLD) and 35 ACL-intact (ACLI) participants were recruited to collect 6-degree-of-freedom knee kinematic data. Then, 216-dimensional multi-domain features covering time domain, frequency domain, time-frequency domain and nonlinearity were extracted. The error rate of SVM classification based on 5-fold cross-validation was used to construct the fitness of MPA, and MPA served to select features and optimize two hyperparameters for SVM. The majority voting strategy-based post-processing was introduced to convert the gait cycle-level to knee-level ACL deficiency detection. Comparing with 7 well-known meta-heuristic algorithms and running all 20 times, the best average gait cycle-level ACL deficiency detection performance (sensitivity: 96.78±0.4.84%, specificity: 99.43±5.70%, and accuracy: 98.48±1.70%) was obtained using the proposed method. With post-processing, this study improved the best (final) detection performance (sensitivity: 97.78±4.97%, specificity: 100±0.00%, and accuracy: 99.13±1.94%). These results demonstrate the feasibility and effectiveness of the proposed method and shows that an efficient subject-independent ACL deficiency detection model can be constructed using the proposed method, which makes it possible to provide a non-invasive, objective and accurate preoperative auxiliary detection method for diagnosing ACL deficiency clinically.
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10
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Aydın S, Akın B. Machine learning classification of maladaptive rumination and cognitive distraction in terms of frequency specific complexity. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103740] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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11
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An EEG based real-time epilepsy seizure detection approach using discrete wavelet transform and machine learning methods. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103820] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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12
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Robotic arm control system based on brain-muscle mixed signals. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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13
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Lian J, Xu F. Spatial Enhanced Pattern Through Graph Convolutional Neural Network for Epileptic EEG Identification. Int J Neural Syst 2022; 32:2250033. [DOI: 10.1142/s0129065722500332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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14
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Epileptic Seizure Detection with Hybrid Time-Frequency EEG Input: A Deep Learning Approach. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:8724536. [PMID: 35211188 PMCID: PMC8863458 DOI: 10.1155/2022/8724536] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Revised: 01/19/2022] [Accepted: 01/27/2022] [Indexed: 11/29/2022]
Abstract
The precise detection of epileptic seizure helps to prevent the serious consequences of seizures. As the electroencephalogram (EEG) reflects the brain activity of patients effectively, it has been widely used in epileptic seizure detection in the past decades. Recently, deep learning-based detection methods which automatically learn features from the EEG signals have attracted much attention. However, with deep learning-based detection methods, different input formats of EEG signals will lead to different detection performances. In this paper, we propose a deep learning-based epileptic seizure detection method with hybrid input formats of EEG signals, i.e., original EEG, Fourier transform of EEG, short-time Fourier transform of EEG, and wavelet transform of EEG. Convolutional neural networks (CNNs) are designed for extracting latent features from these inputs. A feature fusion mechanism is applied to integrate the learned features to generate a more stable syncretic feature for seizure detection. The experimental results show that our proposed hybrid method is effective to improve the seizure detection performance in few-shot scenarios.
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15
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Craley J, Jouny C, Johnson E, Hsu D, Ahmed R, Venkataraman A. Automated seizure activity tracking and onset zone localization from scalp EEG using deep neural networks. PLoS One 2022; 17:e0264537. [PMID: 35226686 PMCID: PMC8884583 DOI: 10.1371/journal.pone.0264537] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 02/13/2022] [Indexed: 12/02/2022] Open
Abstract
We propose a novel neural network architecture, SZTrack, to detect and track the spatio-temporal propagation of seizure activity in multichannel EEG. SZTrack combines a convolutional neural network encoder operating on individual EEG channels with recurrent neural networks to capture the evolution of seizure activity. Our unique training strategy aggregates individual electrode level predictions for patient-level seizure detection and localization. We evaluate SZTrack on a clinical EEG dataset of 201 seizure recordings from 34 epilepsy patients acquired at the Johns Hopkins Hospital. Our network achieves similar seizure detection performance to state-of-the-art methods and provides valuable localization information that has not previously been demonstrated in the literature. We also show the cross-site generalization capabilities of SZTrack on a dataset of 53 seizure recordings from 14 epilepsy patients acquired at the University of Wisconsin Madison. SZTrack is able to determine the lobe and hemisphere of origin in nearly all of these new patients without retraining the network. To our knowledge, SZTrack is the first end-to-end seizure tracking network using scalp EEG.
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Affiliation(s)
- Jeff Craley
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, United States of America
| | - Christophe Jouny
- School of Medicine, Johns Hopkins University, Baltimore, MD, United States of America
| | - Emily Johnson
- School of Medicine, Johns Hopkins University, Baltimore, MD, United States of America
| | - David Hsu
- Department of Neurology, University of Wisconsin Madison, Madison, WI, United States of America
| | - Raheel Ahmed
- Department of Neurosurgery, University of Wisconsin Madison, Madison, WI, United States of America
| | - Archana Venkataraman
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, United States of America
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Ambati R, Raja S, Al-Hameed M, John T, Arjoune Y, Shekhar R. Neuromorphic Architecture Accelerated Automated Seizure Detection in Multi-Channel Scalp EEG. SENSORS 2022; 22:s22051852. [PMID: 35271005 PMCID: PMC8914704 DOI: 10.3390/s22051852] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 02/22/2022] [Accepted: 02/23/2022] [Indexed: 11/16/2022]
Abstract
Epileptic focal seizures can be localized in the brain using tracer injections during or immediately after the incidence of a seizure. A real-time automated seizure detection system with minimal latency can help time the injection properly to find the seizure origin accurately. Reliable real-time seizure detection systems have not been clinically reported yet. We developed an anomaly detection-based automated seizure detection system, using scalp-electroencephalogram (EEG) data, which can be trained using a few seizure sessions, and implemented it on commercially available hardware with parallel, neuromorphic architecture—the NeuroStack. We extracted nonlinear, statistical, and discrete wavelet decomposition features, and we developed a graphical user interface and traditional feature selection methods to select the most discriminative features. We investigated Reduced Coulomb Energy (RCE) networks and K-Nearest Neighbors (k-NN) for its several advantages, such as fast learning no local minima problem. We obtained a maximum sensitivity of 91.14%±1.77% and a specificity of 98.77%±0.57% with 5 s epoch duration. The system’s latency was 12 s, which is within most seizure event windows, which last for an average duration of 60 s. Our results showed that the CD feature consumes large computation resources and excluding it can reduce the latency to 3.6 s but at the cost of lower performance 80% sensitivity and 97% specificity. We demonstrated that the proposed methodology achieves a high specificity and an acceptable sensitivity within a short delay. Our results indicated also that individual-based RCE are superior to population-based RCE. The proposed RCE networks has been compared to SVM and ANN as a baseline for comparison as they are the most common machine learning seizure detection methods. SVM and ANN-based systems were trained on the same data as RCE and K-NN with features optimized specifically for them. RCE nets are superior to SVM and ANN. The proposed model also achieves comparable performance to the state-of-the-art deep learning techniques while not requiring a sizeable database, which is often expensive to build. These numbers indicate that the system is viable as a trigger mechanism for tracer injection.
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Affiliation(s)
- Ravi Ambati
- Sheikh Zayed Institute for Pediatric Surgical Innovation, Children’s National Hospital, Washington, DC 20010, USA; (R.A.); (T.J.); (Y.A.)
| | - Shanker Raja
- National Neuroscience Institute, King Fahad Medical City, Riyadh 12231, Saudi Arabia; (S.R.); (M.A.-H.)
| | - Majed Al-Hameed
- National Neuroscience Institute, King Fahad Medical City, Riyadh 12231, Saudi Arabia; (S.R.); (M.A.-H.)
| | - Titus John
- Sheikh Zayed Institute for Pediatric Surgical Innovation, Children’s National Hospital, Washington, DC 20010, USA; (R.A.); (T.J.); (Y.A.)
| | - Youness Arjoune
- Sheikh Zayed Institute for Pediatric Surgical Innovation, Children’s National Hospital, Washington, DC 20010, USA; (R.A.); (T.J.); (Y.A.)
| | - Raj Shekhar
- Sheikh Zayed Institute for Pediatric Surgical Innovation, Children’s National Hospital, Washington, DC 20010, USA; (R.A.); (T.J.); (Y.A.)
- Correspondence:
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17
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Song Z, Deng B, Wang J, Yi G, Yue W. Epileptic seizure detection using brain-rhythmic recurrence biomarkers and ONASNet-based transfer learning. IEEE Trans Neural Syst Rehabil Eng 2022; 30:979-989. [DOI: 10.1109/tnsre.2022.3165060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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18
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Kaleem M, Guergachi A, Krishnan S. Comparison of Empirical Mode Decomposition, Wavelets, and Different Machine Learning Approaches for Patient-Specific Seizure Detection Using Signal-Derived Empirical Dictionary Approach. Front Digit Health 2021; 3:738996. [PMID: 34966902 PMCID: PMC8710482 DOI: 10.3389/fdgth.2021.738996] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 11/18/2021] [Indexed: 11/23/2022] Open
Abstract
Analysis of long-term multichannel EEG signals for automatic seizure detection is an active area of research that has seen application of methods from different domains of signal processing and machine learning. The majority of approaches developed in this context consist of extraction of hand-crafted features that are used to train a classifier for eventual seizure detection. Approaches that are data-driven, do not use hand-crafted features, and use small amounts of patients' historical EEG data for classifier training are few in number. The approach presented in this paper falls in the latter category, and is based on a signal-derived empirical dictionary approach, which utilizes empirical mode decomposition (EMD) and discrete wavelet transform (DWT) based dictionaries learned using a framework inspired by traditional methods of dictionary learning. Three features associated with traditional dictionary learning approaches, namely projection coefficients, coefficient vector and reconstruction error, are extracted from both EMD and DWT based dictionaries for automated seizure detection. This is the first time these features have been applied for automatic seizure detection using an empirical dictionary approach. Small amounts of patients' historical multi-channel EEG data are used for classifier training, and multiple classifiers are used for seizure detection using newer data. In addition, the seizure detection results are validated using 5-fold cross-validation to rule out any bias in the results. The CHB-MIT benchmark database containing long-term EEG recordings of pediatric patients is used for validation of the approach, and seizure detection performance comparable to the state-of-the-art is obtained. Seizure detection is performed using five classifiers, thereby allowing a comparison of the dictionary approaches, features extracted, and classifiers used. The best seizure detection performance is obtained using EMD based dictionary and reconstruction error feature and support vector machine classifier, with accuracy, sensitivity and specificity values of 88.2, 90.3, and 88.1%, respectively. Comparison is also made with other recent studies using the same database. The methodology presented in this paper is shown to be computationally efficient and robust for patient-specific automatic seizure detection. A data-driven methodology utilizing a small amount of patients' historical data is hence demonstrated as a practical solution for automatic seizure detection.
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Affiliation(s)
- Muhammad Kaleem
- Department of Electrical Engineering, University of Management and Technology, Lahore, Pakistan
| | - Aziz Guergachi
- Department of Information Technology Management, Ted Rogers School of Management, Ryerson University, Toronto, ON, Canada
| | - Sridhar Krishnan
- Department of Electrical, Computer and Biomedical Engineering, Ryerson University, Toronto, ON, Canada
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A Deep Learning-Based Classification Method for Different Frequency EEG Data. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2021; 2021:1972662. [PMID: 34721654 PMCID: PMC8553488 DOI: 10.1155/2021/1972662] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Revised: 07/26/2021] [Accepted: 09/13/2021] [Indexed: 11/18/2022]
Abstract
In recent years, the research on electroencephalography (EEG) has focused on the feature extraction of EEG signals. The development of convenient and simple EEG acquisition devices has produced a variety of EEG signal sources and the diversity of the EEG data. Thus, the adaptability of EEG classification methods has become significant. This study proposed a deep network model for autonomous learning and classification of EEG signals, which could self-adaptively classify EEG signals with different sampling frequencies and lengths. The artificial design feature extraction methods could not obtain stable classification results when analyzing EEG data with different sampling frequencies. However, the proposed depth network model showed considerably better universality and classification accuracy, particularly for EEG signals with short length, which was validated by two datasets.
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Gao M, Mao J. A Novel Active Rehabilitation Model for Stroke Patients Using Electroencephalography Signals and Deep Learning Technology. Front Neurosci 2021; 15:780147. [PMID: 34776859 PMCID: PMC8581202 DOI: 10.3389/fnins.2021.780147] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Accepted: 10/11/2021] [Indexed: 12/25/2022] Open
Abstract
The main clinical manifestations of stroke are motor, language, sensory, and mental disorders. After treatment, in addition to being conscious, other symptoms will still remain in varying degrees. This is the sequelae of stroke, including numbness, facial paralysis, central paralysis, and central paralysis. If the sequelae of stroke are not treated effectively, they can easily develop into permanent sequelae. Most of the affected people have sequelae, and most of them have symptoms of upper limb paralysis. Therefore, it is of great significance to study how to carry out effective rehabilitation training for stroke patients to reduce the disease and even restore their motor function. Based on this background, this research aims to use deep learning technology to design a stroke rehabilitation model based on electroencephalography (EEG) signals. First, the patient's EEG signal will be preprocessed. Then, an improved deep neural network model (IDNN) is used to get the EEG classification results. The traditional DNN model construction process is simple and suitable for scenarios where there is no special requirement for the data format, but the generalization of a single DNN model is usually poor. Large margin support vector machine (LM_SVM) is an extension method of support vector machine (SVM), suitable for any occasion. By optimizing the edge distribution, better generalization performance can be obtained. Taking into account the advantages of DNN and LM_SVM and the high aliasing characteristics of stroke data, an improved DNN model is proposed. Finally, based on the EEG recognition result of the model, the rehabilitation equipment is controlled to assist the patient in rehabilitation treatment. The experimental results verify the superiority of the EEG classification model used, and further prove that this research has good practical value.
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Affiliation(s)
- Ming Gao
- College of Sports Science and Technology, Wuhan Sports University, Wuhan, China
| | - Jie Mao
- College of Sports Engineering and Information Technology, Wuhan Sports University, Wuhan, China
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Sahani M, Rout SK, Dash PK. FPGA implementation of epileptic seizure detection using semisupervised reduced deep convolutional neural network. Appl Soft Comput 2021. [DOI: 10.1016/j.asoc.2021.107639] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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22
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Patient-specific method of sleep electroencephalography using wavelet packet transform and Bi-LSTM for epileptic seizure prediction. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102963] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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23
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Zhang Y, Zhou Z, Pan W, Bai H, Liu W, Wang L, Lin C. Epilepsy Signal Recognition Using Online Transfer TSK Fuzzy Classifier Underlying Classification Error and Joint Distribution Consensus Regularization. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021; 18:1667-1678. [PMID: 32750863 DOI: 10.1109/tcbb.2020.3002562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In this study, an online transfer TSK fuzzy classifier O-T-TSK-FC is proposed for recognizing epilepsy signals. Compared with most of the existing transfer learning models, O-T-TSK-FC enjoys its merits from the following three aspects: 1) Since different patients often response to the same neuronal firing stimulation in different neural manners, the labeled data in the source domain cannot accurately represent the primary EEG data in the target domain. Therefore, we design an objective function which can integrate with subject-specific data in the target domain to induce the target predictive function. 2) A new regularization used for knowledge transfer is proposed from the perspective of error consensus, and its rationality is explained from the perspective of probability density estimation. 3) Clustering is used to partition source domains so as to reduce the computation of O-T-TSK-FC without affecting its performance. Based on the EEG signals collected from Bonn University, six different online scenarios for transfer learning are constructed. Experimental results on them show that O-T-TSK-FC performs better than benchmarking algorithms and robustly.
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Shariat A, Zarei A, Karvigh SA, Asl BM. Automatic detection of epileptic seizures using Riemannian geometry from scalp EEG recordings. Med Biol Eng Comput 2021; 59:1431-1445. [PMID: 34128177 DOI: 10.1007/s11517-021-02385-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 05/15/2021] [Indexed: 11/30/2022]
Abstract
This paper proposes a new framework for epileptic seizure detection using non-invasive scalp electroencephalogram (sEEG) signals. The major innovation of the current study is using the Riemannian geometry for transforming the covariance matrices estimated from the EEG channels into a feature vector. The spatial covariance matrices are considered as features in order to extract the spatial information of the sEEG signals without applying any spatial filtering. Since these matrices are symmetric and positive definite (SPD), they belong to a special manifold called the Riemannian manifold. Furthermore, a kernel based on Riemannian geometry is proposed. This kernel maps the SPD matrices onto the Riemannian tangent space. The SPD matrices, obtained from all channels of the segmented sEEG signals, have high dimensions and extra information. For these reasons, the sequential forward feature selection method is applied to select the best features and reduce the computational burden in the classification step. The selected features are fed into a support vector machine (SVM) with an RBF kernel to classify the feature vectors into seizure and non-seizure classes. The performance of the proposed method is evaluated using two long-term scalp EEG (CHB-MIT benchmark and private) databases. Experimental results on all 23 subjects of the CHB-MIT database reveal an accuracy of 99.87%, a sensitivity of 99.91%, and a specificity of 99.82%. In addition, the introduced algorithm is tested on the private sEEG signals recorded from 20 patients, having 1380 seizures. The proposed approach achieves an accuracy, a sensitivity, and a specificity of 98.14%, 98.16%, and 98.12%, respectively. The experimental results on both sEEG databases demonstrate the effectiveness of the proposed method for automated epileptic seizure detection, especially for the private database which has noisier signals in comparison to the CHB-MIT database. Graphical Abstract Block diagram of the proposed epileptic seizure detection algorithm.
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Affiliation(s)
- Atefeh Shariat
- Department of Biomedical Engineering, Tarbiat Modares University, Tehran, Iran
| | - Asghar Zarei
- Department of Biomedical Engineering, Tarbiat Modares University, Tehran, Iran
| | - Sanaz Ahmadi Karvigh
- Department of Neurology, Sina Hospital, Tehran University of Medical Sciences, Tehran, Iran
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Bosl WJ, Leviton A, Loddenkemper T. Prediction of Seizure Recurrence. A Note of Caution. Front Neurol 2021; 12:675728. [PMID: 34054713 PMCID: PMC8155381 DOI: 10.3389/fneur.2021.675728] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 04/20/2021] [Indexed: 12/31/2022] Open
Abstract
Great strides have been made recently in documenting that machine-learning programs can predict seizure occurrence in people who have epilepsy. Along with this progress have come claims that appear to us to be a bit premature. We anticipate that many people will benefit from seizure prediction. We also doubt that all will benefit. Although machine learning is a useful tool for aiding discovery, we believe that the greatest progress will come from deeper understanding of seizures, epilepsy, and the EEG features that enable seizure prediction. In this essay, we lay out reasons for optimism and skepticism.
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Affiliation(s)
- William J Bosl
- Boston Children's Hospital, Boston, MA, United States.,Harvard Medical School, Boston, MA, United States.,Health Informatics Program, University of San Francisco, San Francisco, CA, United States
| | - Alan Leviton
- Boston Children's Hospital, Boston, MA, United States.,Harvard Medical School, Boston, MA, United States
| | - Tobias Loddenkemper
- Boston Children's Hospital, Boston, MA, United States.,Harvard Medical School, Boston, MA, United States
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Yadav VP, Sharma KK. Variational mode decomposition-based seizure classification using Bayesian regularized shallow neural network. Biocybern Biomed Eng 2021. [DOI: 10.1016/j.bbe.2021.02.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Wang D, Liu Z, Tao Y, Chen W, Chen B, Wang Q, Yan X, Wang G. Improvement in EEG Source Imaging Accuracy by Means of Wavelet Packet Transform and Subspace Component Selection. IEEE Trans Neural Syst Rehabil Eng 2021; 29:650-661. [PMID: 33687844 DOI: 10.1109/tnsre.2021.3064665] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The electroencephalograph (EEG) source imaging (ESI) method is a non-invasive method that provides high temporal resolution imaging of brain electrical activity on the cortex. However, because the accuracy of EEG source imaging is often affected by unwanted signals such as noise or other source-irrelevant signals, the results of ESI are often incongruous with the real sources of brain activities. This study presents a novel ESI method (WPESI) that is based on wavelet packet transform (WPT) and subspace component selection to image the cerebral activities of EEG signals on the cortex. First, the original EEG signals are decomposed into several subspace components by WPT. Second, the subspaces associated with brain sources are selected and the relevant signals are reconstructed by WPT. Finally, the current density distribution in the cerebral cortex is obtained by establishing a boundary element model (BEM) from head MRI and applying the appropriate inverse calculation. In this study, the localization results obtained by this proposed approach were better than those of the original sLORETA approach (OESI) in the computer simulations and visual evoked potential (VEP) experiments. For epilepsy patients, the activity sources estimated by this proposed algorithm conformed to the seizure onset zones. The WPESI approach is easy to implement achieved favorable accuracy in terms of EEG source imaging. This demonstrates the potential for use of the WPESI algorithm to localize epileptogenic foci from scalp EEG signals.
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Yao X, Li X, Ye Q, Huang Y, Cheng Q, Zhang GQ. A robust deep learning approach for automatic classification of seizures against non-seizures. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102215] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Craley J, Johnson E, Jouny C, Venkataraman A. Automated inter-patient seizure detection using multichannel Convolutional and Recurrent Neural Networks. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102360] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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30
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Cao J, Zhu J, Hu W, Kummert A. Epileptic Signal Classification With Deep EEG Features by Stacked CNNs. IEEE Trans Cogn Dev Syst 2020. [DOI: 10.1109/tcds.2019.2936441] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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31
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Automated detection of subthalamic nucleus in deep brain stimulation surgery for Parkinson’s disease using microelectrode recordings and wavelet packet features. J Neurosci Methods 2020; 343:108826. [DOI: 10.1016/j.jneumeth.2020.108826] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Accepted: 06/22/2020] [Indexed: 01/02/2023]
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32
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Adaptive median feature baseline correction for improving recognition of epileptic seizures in ICU EEG. Neurocomputing 2020. [DOI: 10.1016/j.neucom.2020.04.144] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Singh N, Dehuri S. Multiclass classification of EEG signal for epilepsy detection using DWT based SVD and fuzzy kNN classifier. INTELLIGENT DECISION TECHNOLOGIES 2020. [DOI: 10.3233/idt-190043] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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34
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Kim T, Nguyen P, Pham N, Bui N, Truong H, Ha S, Vu T. Epileptic Seizure Detection and Experimental Treatment: A Review. Front Neurol 2020; 11:701. [PMID: 32849189 PMCID: PMC7396638 DOI: 10.3389/fneur.2020.00701] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 07/09/2020] [Indexed: 01/18/2023] Open
Abstract
One-fourths of the patients have medication-resistant seizures and require seizure detection and treatment continuously to cope with sudden seizures. Seizures can be detected by monitoring the brain and muscle activities, heart rate, oxygen level, artificial sounds, or visual signatures through EEG, EMG, ECG, motion, or audio/video recording on the human head and body. In this article, we first discuss recent advances in seizure sensing, signal processing, time- or frequency-domain analysis, and classification algorithms to detect and classify seizure stages. Then, we show a strong potential of applying recent advancements in non-invasive brain stimulation technology to treat seizures. In particular, we explain the fundamentals of brain stimulation approaches, including (1) transcranial magnetic stimulation (TMS), (2) transcranial direct current stimulation (tDCS), (3) transcranial focused ultrasound stimulation (tFUS), and how to use them to treat seizures. Through this review, we intend to provide a broad view of both recent seizure diagnoses and treatments. Such knowledge would help fresh and experienced researchers to capture the advancements in sensing, detection, classification, and treatment seizures. Last but not least, we provide potential research directions that would attract seizure researchers/engineers in the field.
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Affiliation(s)
- Taeho Kim
- Department of Computer Science, University of Colorado, Boulder, CO, United States
| | - Phuc Nguyen
- Department of Computer Science, University of Colorado, Boulder, CO, United States
- Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, United States
| | - Nhat Pham
- Department of Computer Science, University of Colorado, Boulder, CO, United States
- Department of Computer Science, University of Oxford, Oxford, United Kingdom
| | - Nam Bui
- Department of Computer Science, University of Colorado, Boulder, CO, United States
| | - Hoang Truong
- Department of Computer Science, University of Colorado, Boulder, CO, United States
| | - Sangtae Ha
- Department of Computer Science, University of Colorado, Boulder, CO, United States
| | - Tam Vu
- Department of Computer Science, University of Colorado, Boulder, CO, United States
- Department of Computer Science, University of Oxford, Oxford, United Kingdom
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Raghu S, Sriraam N, Gommer ED, Hilkman DMW, Temel Y, Rao SV, Hegde AS, Kubben PL. Cross-database evaluation of EEG based epileptic seizures detection driven by adaptive median feature baseline correction. Clin Neurophysiol 2020; 131:1567-1578. [PMID: 32417698 DOI: 10.1016/j.clinph.2020.03.033] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 03/04/2020] [Accepted: 03/12/2020] [Indexed: 01/15/2023]
Abstract
OBJECTIVE In long-term electroencephalogram (EEG) signals, automated classification of epileptic seizures is desirable in diagnosing epilepsy patients, as it otherwise depends on visual inspection. To the best of the author's knowledge, existing studies have validated their algorithms using cross-validation on the same database and less number of attempts have been made to extend their work on other databases to test the generalization capability of the developed algorithms. In this study, we present the algorithm for cross-database evaluation for classification of epileptic seizures using five EEG databases collected from different centers. The cross-database framework helps when sufficient epileptic seizures EEG data are not available to build automated seizure detection model. METHODS Two features, namely successive decomposition index and matrix determinant were extracted at a segmentation length of 4 s (50% overlap). Then, adaptive median feature baseline correction (AM-FBC) was applied to overcome the inter-patient and inter-database variation in the feature distribution. The classification was performed using a support vector machine classifier with leave-one-database-out cross-validation. Different classification scenarios were considered using AM-FBC, smoothing of the train and test data, and post-processing of the classifier output. RESULTS Simulation results revealed the highest area under the curve-sensitivity-specificity-false detections (per hour) of 1-1-1-0.15, 0.89-0.99-0.82-2.5, 0.99-0.73-1-1, 0.95-0.97-0.85-1.7, 0.99-0.99-0.92-1.1 using the Ramaiah Medical College and Hospitals, Children's Hospital Boston-Massachusetts Institute of Technology, Temple University Hospital, Maastricht University Medical Centre, and University of Bonn databases respectively. CONCLUSIONS We observe that the AM-FBC plays a significant role in improving seizure detection results by overcoming inter-database variation of feature distribution. SIGNIFICANCE To the best of the author's knowledge, this is the first study reporting on the cross-database evaluation of classification of epileptic seizures and proven to be better generalization capability when evaluated using five databases and can contribute to accurate and robust detection of epileptic seizures in real-time.
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Affiliation(s)
- S Raghu
- Department of Neurosurgery, School for Mental Health and Neuroscience of the Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht, the Netherlands; Center for Medical Electronics and Computing, MS Ramaiah Institute of Technology, Bengaluru, India.
| | - Natarajan Sriraam
- Center for Medical Electronics and Computing, MS Ramaiah Institute of Technology, Bengaluru, India.
| | - Erik D Gommer
- Department of Clinical Neurophysiology, Maastricht University Medical Center, Maastricht, the Netherlands
| | - Danny M W Hilkman
- Department of Clinical Neurophysiology, Maastricht University Medical Center, Maastricht, the Netherlands
| | - Yasin Temel
- Department of Neurosurgery, Maastricht University Medical Center, Maastricht, the Netherlands
| | | | | | - Pieter L Kubben
- Department of Neurosurgery, Maastricht University Medical Center, Maastricht, the Netherlands
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Hu D, Cao J, Lai X, Liu J. Epileptic State Classification based on Intrinsic Mode Function and Wavelet Packet Decomposition. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:2382-2385. [PMID: 31946379 DOI: 10.1109/embc.2019.8856282] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The scalp electroencephalogram (EEG) signal based epileptic seizure analysis has been comprehensively studied in the past. But existing researches are generally concerned with the seizure/non-seizure detection. Few attention has been paid to the epileptic preictal state classification, which is found to be evidently more important to the injury prevention. In this paper, we study the epileptic preictal state classification for seizure prediction. The one hour preictal EEG signal is divided into non-overlapped equilong segments. Statistical features of the first intrinsic mode function (FIMF) of the empirical mode decomposition (EMD) of the EEG signal as well as the 4-level wavelet packet decomposition (WPD) of the FIMF are extracted for the EEG signal representation. A five-state classification problem is formulated, including one interictal, three preictal, and one seizure states. Experiments on the benchmark epilepsy EEG database collected by the Children's Hospital Boston and the Massachusetts Institute of Technology (CHB-MIT) using several popular classifiers are provided for the effectiveness demonstration.
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Raghu S, Sriraam N, Temel Y, Rao SV, Hegde AS, Kubben PL. Complexity analysis and dynamic characteristics of EEG using MODWT based entropies for identification of seizure onset. J Biomed Res 2020; 34:1-3. [PMID: 32561693 PMCID: PMC7324271 DOI: 10.7555/jbr.33.20190021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In this paper, complexity analysis and dynamic characteristics of electroencephalogram (EEG) signal based on maximal overlap discrete wavelet transform (MODWT) has been exploited for the identification of seizure onset. Since wavelet-based studies were well suited for classification of normal and epileptic seizure EEG, we have applied MODWT which is an improved version of discrete wavelet transform (DWT). The selection of optimal wavelet sub-band and features plays a crucial role to understand the brain dynamics in epileptic patients. Therefore, we have investigated MODWT using four different wavelets, namely Haar, Coif4, Dmey, and Sym4 sub-bands until seven levels. Further, we have explored the potentials of six entropies, namely sigmoid, Shannon, wavelet, Renyi, Tsallis, and Steins unbiased risk estimator (SURE) entropies in each sub-band. The sigmoid entropy extracted from Haar wavelet in sub-band D4 showed the highest accuracy of 98.44% using support vector machine classifier for the EEG collected from Ramaiah Medical College and Hospitals (RMCH). Further, the highest accuracy of 100% and 94.51% was achieved for the University of Bonn (UBonn) and CHB-MIT databases respectively. The findings of the study showed that Haar and Dmey wavelets were found to be computationally economical and expensive respectively. Besides, in terms of dynamic characteristics, MODWT results revealed that the highest energy present in sub-bands D2, D3, and D4 and entropies in those respective sub-bands outperformed other entropies in terms of classification results for RMCH database. Similarly, using all the entropies, sub-bands D5 and D6 outperformed other sub-bands for UBonn and CHB-MIT databases respectively. In conclusion, the comparison results of MODWT outperformed DWT.
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Affiliation(s)
- Shivarudhrappa Raghu
- Department of Neurosurgery, School for Mental Health and Neuroscience of the Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht 6200 MD, The Netherlands;Center for Medical Electronics and Computing, M S Ramaiah Institute of Technology, Bengaluru 560054, India
| | - Natarajan Sriraam
- Center for Medical Electronics and Computing, M S Ramaiah Institute of Technology, Bengaluru 560054, India
| | - Yasin Temel
- Department of Neurosurgery, Maastricht University Medical Center
| | | | | | - Pieter L Kubben
- Department of Neurosurgery, Maastricht University Medical Center
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Automated detection of epileptic seizures using successive decomposition index and support vector machine classifier in long-term EEG. Neural Comput Appl 2019. [DOI: 10.1007/s00521-019-04389-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Rahman MM, Hassan Bhuiyan MI, Das AB. Classification of focal and non-focal EEG signals in VMD-DWT domain using ensemble stacking. Biomed Signal Process Control 2019. [DOI: 10.1016/j.bspc.2019.01.012] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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41
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Detection of Seizure Event and Its Onset/Offset Using Orthonormal Triadic Wavelet Based Features. Ing Rech Biomed 2019. [DOI: 10.1016/j.irbm.2018.12.002] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Sridevi V, Ramasubba Reddy M, Srinivasan K, Radhakrishnan K, Rathore C, Nayak DS. Improved Patient-Independent System for Detection of Electrical Onset of Seizures. J Clin Neurophysiol 2019; 36:14-24. [PMID: 30383718 PMCID: PMC6314507 DOI: 10.1097/wnp.0000000000000533] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
PURPOSE To design a non-patient-specific system to detect the electrical onset of seizures in patients with temporal lobe epilepsy. METHODS We used EEG data from 29 seizures of 18 temporal lobe epilepsy patients who underwent multiday video-scalp EEG monitoring as part of their presurgical evaluations. We segmented each data set into preictal and ictal phases, and identified spectral entropy, spectral energy, and signal energy as useful features for discriminating normal and seizure conditions. The performance of five different classifiers was analyzed using these features to design an automated detection system. RESULTS Among the five classifiers, decision tree, k-nearest neighbor, and support vector machine performed with sensitivity (specificity) of 79% (81%), 75% (85%), and 80% (86%), respectively. The other two, linear discriminant algorithm and Naive Bayes classifiers, performed with sensitivity (specificity) of 54% (94%), 47% (96%), respectively. CONCLUSIONS The support vector machine-based seizure detection system showed better detection capability in terms of sensitivity and specificity measures as compared to linear discriminant algorithm, Naive Bayes, decision tree, and k-nearest neighbor classifiers. CONCLUSIONS Our study shows that a generalized system to detect the electrical onset of seizures in temporal lobe epilepsy using scalp-recorded EEG is possible. If confirmed on a larger data set, our findings may have significant implications for the management of seizures, especially in patients with drug-resistant epilepsy.
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Affiliation(s)
- Veerasingam Sridevi
- Department of Instrumentation and Control Engineering, National Institute of Technology, Tiruchirappalli, India
| | - Machireddy Ramasubba Reddy
- Department of Applied Mechanics, Biomedical Engineering Group, Indian Institute of Technology, Madras, India
| | - Kannan Srinivasan
- Department of Instrumentation and Control Engineering, National Institute of Technology, Tiruchirappalli, India
| | | | - Chaturbhuj Rathore
- SBKS Medical Institute Research Center, Sumandeep Vidyapeeth, Vadodara, Gujarat, India; and
| | - Dinesh S. Nayak
- Neurologist and Epileptologist, Gleneagles Global Health City, Chennai, India
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Jacobs D, Hilton T, del Campo M, Carlen PL, Bardakjian BL. Classification of Pre-Clinical Seizure States Using Scalp EEG Cross-Frequency Coupling Features. IEEE Trans Biomed Eng 2018; 65:2440-2449. [DOI: 10.1109/tbme.2018.2797919] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Sriraam N, Tamanna K, Narayan L, Khanum M, Raghu S, Hegde AS, Kumar AB. Multichannel EEG based inter-ictal seizures detection using Teager energy with backpropagation neural network classifier. AUSTRALASIAN PHYSICAL & ENGINEERING SCIENCES IN MEDICINE 2018; 41:1047-1055. [DOI: 10.1007/s13246-018-0694-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2018] [Accepted: 10/09/2018] [Indexed: 10/28/2022]
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Kaleem M, Guergachi A, Krishnan S. Patient-specific seizure detection in long-term EEG using wavelet decomposition. Biomed Signal Process Control 2018. [DOI: 10.1016/j.bspc.2018.07.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Design and Evaluation of a Real Time Physiological Signals Acquisition System Implemented in Multi-Operating Rooms for Anesthesia. J Med Syst 2018; 42:148. [PMID: 29961144 DOI: 10.1007/s10916-018-0999-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 06/21/2018] [Indexed: 10/28/2022]
Abstract
With critical importance of medical healthcare, there exist urgent needs for in-depth medical studies that can access and analyze specific physiological signals to provide theoretical support for practical clinical care. As a consequence, obtaining the valuable medical data with minimal cost and impacts on hospital work comes as the first concern of researchers. Anesthesia plays a widely recognized role in surgeries, which attracts people to undertake relevant research. In this paper, a real-time physiological medical signal data acquisition system (PMSDA) for the multi-operating room applications is proposed with high universality of the hospital practical settings and research requirements. By utilizing a wireless communication approach, it provides an easily accessible network platform for collection of physiological medical signals such as photoplethysmogram (PPG), electrocardiograph (ECG) and electroencephalogram (EEG) during the surgery. In addition, the raw data is stored on a server for safe backup and further analysis of depth of anesthesia (DoA). Results show that the PMSDA exhibits robust, high quality performance and efficiently reduces costs compared to previously manual methods and allows seamless integration into hospital environment, independent of its routine work. Overall, it provides a pragmatic and flexible surgery-data acquisition system model with low impact and resource cost applicable to research in critical and practical medical circumstances.
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Hosseini SA. A Hybrid Approach Based on Higher Order Spectra for Clinical Recognition of Seizure and Epilepsy Using Brain Activity. Basic Clin Neurosci 2018; 8:479-492. [PMID: 29942431 PMCID: PMC6010651 DOI: 10.29252/nirp.bcn.8.6.479] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
Introduction This paper proposes a reliable and efficient technique to recognize different epilepsy states, including healthy, interictal, and ictal states, using Electroencephalogram (EEG) signals. Methods The proposed approach consists of pre-processing, feature extraction by higher order spectra, feature normalization, feature selection by genetic algorithm and ranking method, and classification by support vector machine with Gaussian and polynomial radial basis function kernels. The proposed approach is validated on a public benchmark dataset to compare it with previous studies. Results The results indicate that the combined use of above elements can effectively decipher the cognitive process of epilepsy and seizure recognition. There are several bispectrum and bicoherence peaks at every bi-frequency plane, which reveal the location of the quadratic phase coupling. The proposed approach can reach, in almost all of the experiments, up to 100% performance in terms of sensitivity, specificity, and accuracy. Conclusion Comparing between the obtained results and previous approaches approves the effectiveness of the proposed approach for seizure and epilepsy recognition.
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Affiliation(s)
- Seyyed Abed Hosseini
- Research Center of Biomedical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
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Kaleem M, Gurve D, Guergachi A, Krishnan S. Patient-specific seizure detection in long-term EEG using signal-derived empirical mode decomposition (EMD)-based dictionary approach. J Neural Eng 2018; 15:056004. [PMID: 29937449 DOI: 10.1088/1741-2552/aaceb1] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE The objective of the work described in this paper is the development of a computationally efficient methodology for patient-specific automatic seizure detection in long-term multi-channel EEG recordings. APPROACH A novel patient-specific seizure detection approach based on a signal-derived empirical mode decomposition (EMD)-based dictionary approach is proposed. For this purpose, we use an empirical framework for EMD-based dictionary creation and learning, inspired by traditional dictionary learning methods, in which the EMD-based dictionary is learned from the multi-channel EEG data being analyzed for automatic seizure detection. We present the algorithm for dictionary creation and learning, whose purpose is to learn dictionaries with a small number of atoms. Using training signals belonging to seizure and non-seizure classes, an initial dictionary, termed as the raw dictionary, is formed. The atoms of the raw dictionary are composed of intrinsic mode functions obtained after decomposition of the training signals using the empirical mode decomposition algorithm. The raw dictionary is then trained using a learning algorithm, resulting in a substantial decrease in the number of atoms in the trained dictionary. The trained dictionary is then used for automatic seizure detection, such that coefficients of orthogonal projections of test signals against the trained dictionary form the features used for classification of test signals into seizure and non-seizure classes. Thus no hand-engineered features have to be extracted from the data as in traditional seizure detection approaches. MAIN RESULTS The performance of the proposed approach is validated using the CHB-MIT benchmark database, and averaged accuracy, sensitivity and specificity values of 92.9%, 94.3% and 91.5%, respectively, are obtained using support vector machine classifier and five-fold cross-validation method. These results are compared with other approaches using the same database, and the suitability of the approach for seizure detection in long-term multi-channel EEG recordings is discussed. SIGNIFICANCE The proposed approach describes a computationally efficient method for automatic seizure detection in long-term multi-channel EEG recordings. The method does not rely on hand-engineered features, as are required in traditional approaches. Furthermore, the approach is suitable for scenarios where the dictionary once formed and trained can be used for automatic seizure detection of newly recorded data, making the approach suitable for long-term multi-channel EEG recordings.
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Affiliation(s)
- Muhammad Kaleem
- Department of Electrical Engineering, University of Management and Technology, Lahore, Pakistan
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Gupta A, Singh P, Karlekar M. A Novel Signal Modeling Approach for Classification of Seizure and Seizure-Free EEG Signals. IEEE Trans Neural Syst Rehabil Eng 2018; 26:925-935. [DOI: 10.1109/tnsre.2018.2818123] [Citation(s) in RCA: 82] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals. SENSORS 2018; 18:s18051372. [PMID: 29710763 PMCID: PMC5982573 DOI: 10.3390/s18051372] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 04/23/2018] [Accepted: 04/26/2018] [Indexed: 01/22/2023]
Abstract
The neurological disorder epilepsy causes substantial problems to the patients with uncontrolled seizures or even sudden deaths. Accurate detection and prediction of epileptic seizures will significantly improve the life quality of epileptic patients. Various feature extraction algorithms were proposed to describe the EEG signals in frequency or time domains. Both invasive intracranial and non-invasive scalp EEG signals have been screened for the epileptic seizure patterns. This study extracted a comprehensive list of 24 feature types from the scalp EEG signals and found 170 out of the 2794 features for an accurate classification of epileptic seizures. An accuracy (Acc) of 99.40% was optimized for detecting epileptic seizures from the scalp EEG signals. A balanced accuracy (bAcc) was calculated as the average of sensitivity and specificity and our seizure detection model achieved 99.61% in bAcc. The same experimental procedure was applied to predict epileptic seizures in advance, and the model achieved Acc = 99.17% for predicting epileptic seizures 10 s before happening.
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