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Enari H, Enari HS, Sekiguchi T, Tanaka M, Suzuki S. Differences in spatial niche of terrestrial mammals when facing extreme snowfall: the case in east Asian forests. Front Zool 2024; 21:3. [PMID: 38297312 PMCID: PMC10832220 DOI: 10.1186/s12983-024-00522-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 01/16/2024] [Indexed: 02/02/2024] Open
Abstract
BACKGROUND Recent climate changes have produced extreme climate events. This study focused on extreme snowfall and intended to discuss the vulnerability of temperate mammals against it through interspecies comparisons of spatial niches in northern Japan. We constructed niche models for seven non-hibernating species through wide-scaled snow tracking on skis, whose total survey length was 1144 km. RESULTS We detected a low correlation (rs < 0.4) between most pairs of species niches, indicating that most species possessed different overwintering tactics. A morphological advantage in locomotion cost on snow did not always expand niche breadth. In contrast, a spatial niche could respond to (1) drastic landscape change by a diminishing understory due to snow, possibly leading to changes in predator-prey interactions, and (2) the mass of cold air, affecting thermoregulatory cost and food accessibility. When extraordinary snowfall occurred, the nonarboreal species with larger body sizes could niche shift, whereas the smaller-sized or semi-arboreal mammals did not. In addition, compared to omnivores, herbivores were prone to severe restriction of niche breadth due to a reduction in food accessibility under extreme climates. CONCLUSIONS Dietary habits and body size could determine the redundancy of niche width, which may govern robustness/vulnerability to extreme snowfall events.
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Affiliation(s)
- Hiroto Enari
- Faculty of Agriculture, Yamagata University, 1-23 Wakabamachi, Tsuruoka, Yamagata, 997-8555, Japan.
| | - Haruka S Enari
- Faculty of Agriculture, Yamagata University, 1-23 Wakabamachi, Tsuruoka, Yamagata, 997-8555, Japan
| | - Tatsuhito Sekiguchi
- Faculty of Agriculture, Yamagata University, 1-23 Wakabamachi, Tsuruoka, Yamagata, 997-8555, Japan
| | - Motohisa Tanaka
- Faculty of Agriculture, Yamagata University, 1-23 Wakabamachi, Tsuruoka, Yamagata, 997-8555, Japan
| | - Sohsuke Suzuki
- Faculty of Agriculture, Yamagata University, 1-23 Wakabamachi, Tsuruoka, Yamagata, 997-8555, Japan
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Ferreira MS, Thurman TJ, Jones MR, Farelo L, Kumar AV, Mortimer SME, Demboski JR, Mills LS, Alves PC, Melo-Ferreira J, Good JM. The evolution of white-tailed jackrabbit camouflage in response to past and future seasonal climates. Science 2023; 379:1238-1242. [PMID: 36952420 DOI: 10.1126/science.ade3984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/25/2023]
Abstract
The genetic basis of adaptive traits has rarely been used to predict future vulnerability of populations to climate change. We show that light versus dark seasonal pelage in white-tailed jackrabbits (Lepus townsendii) tracks snow cover and is primarily determined by genetic variation at endothelin receptor type B (EDNRB), corin serine peptidase (CORIN), and agouti signaling protein (ASIP). Winter color variation was associated with deeply divergent alleles at these genes, reflecting selection on both ancestral and introgressed variation. Forecasted reductions in snow cover are likely to induce widespread camouflage mismatch. However, simulated populations with variation for darker winter pelage are predicted to adapt rapidly, providing a trait-based genetic framework to facilitate evolutionary rescue. These discoveries demonstrate how the genetic basis of climate change adaptation can inform conservation.
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Affiliation(s)
- Mafalda S Ferreira
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, Porto, Portugal
- Division of Biological Sciences, University of Montana, Missoula, MT, USA
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Timothy J Thurman
- Division of Biological Sciences, University of Montana, Missoula, MT, USA
| | - Matthew R Jones
- Division of Biological Sciences, University of Montana, Missoula, MT, USA
| | - Liliana Farelo
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Alexander V Kumar
- Wildlife Biology Program, College of Forestry and Conservation, University of Montana, Missoula, MT, USA
- US Fish and Wildlife Service, Fort Collins, CO, USA
| | | | - John R Demboski
- Zoology Department, Denver Museum of Nature & Science, Denver, CO, USA
| | - L Scott Mills
- Wildlife Biology Program, College of Forestry and Conservation, University of Montana, Missoula, MT, USA
- Office of Research and Creative Scholarship, University of Montana, Missoula, MT, USA
| | - Paulo C Alves
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, Porto, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
- Wildlife Biology Program, College of Forestry and Conservation, University of Montana, Missoula, MT, USA
| | - José Melo-Ferreira
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, Porto, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Jeffrey M Good
- Division of Biological Sciences, University of Montana, Missoula, MT, USA
- Wildlife Biology Program, College of Forestry and Conservation, University of Montana, Missoula, MT, USA
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Sato JJ, Aiba H, Ohtake K, Minato S. Evolutionary and Anthropogenic Factors Affecting the Mitochondrial D-loop Genetic Diversity of Apodemus and Myodes Rodents on the Northern Slope of Mt. Fuji. MAMMAL STUDY 2020. [DOI: 10.3106/ms2020-0033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Jun J. Sato
- Faculty of Life Science and Technology, Fukuyama University, Higashimura-cho, Aza, Sanzo, 985, Fukuyama 729-0292, Japan
| | - Haruka Aiba
- Japanese Dormice Preservation & Research Group, Yamanashi 408-0015, Japan
| | - Kouichi Ohtake
- Japanese Dormice Preservation & Research Group, Yamanashi 408-0015, Japan
| | - Shusaku Minato
- Japanese Dormice Preservation & Research Group, Yamanashi 408-0015, Japan
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Kinoshita G, Nunome M, Kryukov AP, Kartavtseva IV, Han SH, Yamada F, Suzuki H. Contrasting phylogeographic histories between the continent and islands of East Asia: Massive mitochondrial introgression and long-term isolation of hares (Lagomorpha: Lepus). Mol Phylogenet Evol 2019; 136:65-75. [PMID: 30951923 DOI: 10.1016/j.ympev.2019.04.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2018] [Revised: 03/19/2019] [Accepted: 04/01/2019] [Indexed: 01/16/2023]
Abstract
Hares of the genus Lepus are distributed worldwide, and introgressive hybridization is thought to be pervasive among species, leading to reticulate evolution and taxonomic confusion. Here, we performed phylogeographic analyses of the following species of hare across East Asia: L. timidus, L. mandshuricus, L. coreanus, and L. brachyurus collected from far-eastern Russia, South Korea, and Japan. Nucleotide sequences of one mitochondrial DNA and eight nuclear gene loci were examined, adding sequences of hares in China from databases. All nuclear DNA analyses supported the clear separation of three phylogroups: L. timidus, L. brachyurus, and the L. mandshuricus complex containing L. coreanus. On the other hand, massive mitochondrial introgression from two L. timidus lineages to the L. mandshuricus complex was suggested in continental East Asia. The northern population of the L. mandshuricus complex was mainly associated with introgression from the continental lineage of L. timidus, possibly since the last glacial period, whereas the southern population of the L. mandshuricus complex experienced introgression from another L. timidus lineage related to the Hokkaido population, possibly before the last glacial period. In contrast to continental hares, no evidence of introgression was found in L. brachyurus in the Japanese Archipelago, which showed the oldest divergence amongst East Asian hare lineages. Our findings suggest that glacial-interglacial climate changes in the circum-Japan Sea region promoted distribution shifts and introgressive hybridization among continental hare species, while the geographic structure of the region contributed to long-term isolation of hares on the islands, preventing inter-species gene flow.
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Affiliation(s)
- Gohta Kinoshita
- Course in Ecological Genetics, Graduate School of Environmental Science, Hokkaido University, N10W5, Kita-ku, Sapporo 060-0810, Japan; Laboratory of Forest Biology Division of Forest & Biomaterials Science, Graduate School of Agriculture, Kyoto University, Kitashirakawa-oiwake, Sakyoku, Kyoto 606-8502, Japan.
| | - Mitsuo Nunome
- Laboratory of Animal Genetics, Graduate School of Bioagricultural Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
| | - Alexey P Kryukov
- Laboratory of Evolutionary Zoology and Genetics, Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far East Branch Russian Academy of Sciences, Vladivostok 690022, Russia
| | - Irina V Kartavtseva
- Laboratory of Evolutionary Zoology and Genetics, Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far East Branch Russian Academy of Sciences, Vladivostok 690022, Russia
| | - San-Hoon Han
- Inter-Korea Wildlife Institute, Namtong-dong, Gumi-si, Kyeongsang-Bukdo 39301, Republic of Korea
| | - Fumio Yamada
- Laboratory of Wildlife Ecology, Forestry and Forest Products Research Institute (FFPRI), Matsunosato, Tsukuba, Ibaraki 305-8687, Japan
| | - Hitoshi Suzuki
- Course in Ecological Genetics, Graduate School of Environmental Science, Hokkaido University, N10W5, Kita-ku, Sapporo 060-0810, Japan
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Ohdachi SD, Yoshizawa K, Takada Y, Motokawa M, Iwasa MA, Arai S, Moribe J, Uematsu Y, Sakai E, Tateishi T, Oh HS, Kinoshita G. Phylogeography of the Japanese White-Toothed Shrew (Eulipotyphla: Soricidae): A Clear Division of Haplogroups between Eastern and Western Japan and their Recent Introduction to Some Regions. MAMMAL STUDY 2018. [DOI: 10.3106/ms2017-0059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Satoshi D. Ohdachi
- Institute of Low Temperature Science, Hokkaido University, Kita 19 Nishi 8, Kita-ku, Sapporo 060-081
| | - Kazunori Yoshizawa
- Systematic Entomology, Graduate School of Agriculture, Hokkaido University, Kita-ku, Sapporo 060-858
| | | | - Masaharu Motokawa
- The Kyoto University Museum, Kyoto University, Yoshida Honmachi, Sakyo-ku, Kyoto 606-8501, Japan
| | - Masahiro A. Iwasa
- College of Bioresource Sciences, Nihon University, Kameino 1866, Fujisawa, Kanagawa 252-0880, Japan
| | - Satoru Arai
- Infectious Disease Surveillance Center, National Institute of Infectious Diseases, Toyama 1-23-1, Sh
| | - Junji Moribe
- Research Center for Wildlife Management, Gifu University, Yanagido 1-1, Gifu 501-1193, Japan
| | - Yasushi Uematsu
- Department of Anatomy, School of Dentistry, Aichi-Gakuin University, Kusumoto-cho, Chikusa-ku, Nagoy
| | - Eiichi Sakai
- Department of Dental Hygiene, Aichi-Gakuin Junior College, Kusumoto-cho, Chikusa-ku, Nagoya 464-8650
| | | | - Hong-Shik Oh
- Faculty of Science Education, Jeju National University, Ara-dong 1, Jeju, Jeju-do 690-756, Republic
| | - Gohta Kinoshita
- Laboratory of Forest Biology, Division of Forest & Biomaterials Science, Graduate School of Agricult
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Zimova M, Hackländer K, Good JM, Melo‐Ferreira J, Alves PC, Mills LS. Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world? Biol Rev Camb Philos Soc 2018; 93:1478-1498. [DOI: 10.1111/brv.12405] [Citation(s) in RCA: 81] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2017] [Revised: 02/06/2018] [Accepted: 02/09/2018] [Indexed: 12/20/2022]
Affiliation(s)
- Marketa Zimova
- Wildlife Biology Program University of Montana Missoula MT 59812 U.S.A
- Fisheries, Wildlife, and Conservation Biology Program, Department of Forestry and Environmental Resources North Carolina State University Raleigh NC 27695 U.S.A
| | - Klaus Hackländer
- Fisheries, Wildlife, and Conservation Biology Program, Department of Forestry and Environmental Resources North Carolina State University Raleigh NC 27695 U.S.A
- Institute of Wildlife Biology and Game Management BOKU ‐ University of Natural Resources and Life Sciences Vienna 1180 Austria
| | - Jeffrey M. Good
- Division of Biological Sciences University of Montana Missoula MT 59812 USA
| | - José Melo‐Ferreira
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado Universidade do Porto Campus Agrário de Vairão, 4485‐661 Vairão Portugal
- Departamento de Biologia Faculdade de Ciências da Universidade do Porto Rua do Campo Alegre, 4169‐007 Porto Portugal
| | - Paulo Célio Alves
- Wildlife Biology Program University of Montana Missoula MT 59812 U.S.A
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado Universidade do Porto Campus Agrário de Vairão, 4485‐661 Vairão Portugal
- Departamento de Biologia Faculdade de Ciências da Universidade do Porto Rua do Campo Alegre, 4169‐007 Porto Portugal
| | - L. Scott Mills
- Wildlife Biology Program and Office of Research and Creative Scholarship University of Montana Missoula MT 59812 USA
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Funakoshi K, Nagasato A, Takenouchi S, Kannonji R, Kikusui M, Uchihara A, Tamai K. Annual Molting Cycle and Photoperiods That Affect Seasonal Coat Color Changes in the Japanese Marten (Martes melampus). MAMMAL STUDY 2017. [DOI: 10.3106/041.042.0402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Kimitake Funakoshi
- Biological Laboratory, Faculty of Intercultural Studies, The International University of Kagoshima, Kagoshima 891-0197, Japan
| | - Ayumi Nagasato
- The Foundation of Environmental Research and Service, Kagoshima 891-0132, Japan
| | - Seiko Takenouchi
- Biological Laboratory, Faculty of Intercultural Studies, The International University of Kagoshima, Kagoshima 891-0197, Japan
| | - Rie Kannonji
- Biological Laboratory, Faculty of Intercultural Studies, The International University of Kagoshima, Kagoshima 891-0197, Japan
| | - Madoka Kikusui
- Biological Laboratory, Faculty of Intercultural Studies, The International University of Kagoshima, Kagoshima 891-0197, Japan
| | - Aimi Uchihara
- Biological Laboratory, Faculty of Intercultural Studies, The International University of Kagoshima, Kagoshima 891-0197, Japan
| | - Kanji Tamai
- Hirakawa Zoological Park, Kagoshima 891-0133, Japan
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Tolesa Z, Bekele E, Tesfaye K, Ben Slimen H, Valqui J, Getahun A, Hartl GB, Suchentrunk F. Mitochondrial and nuclear DNA reveals reticulate evolution in hares (Lepus spp., Lagomorpha, Mammalia) from Ethiopia. PLoS One 2017; 12:e0180137. [PMID: 28767659 PMCID: PMC5540492 DOI: 10.1371/journal.pone.0180137] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Accepted: 06/10/2017] [Indexed: 11/28/2022] Open
Abstract
For hares (Lepus spp., Leporidae, Lagomorpha, Mammalia) from Ethiopia no conclusive molecular phylogenetic data are available. To provide a first molecular phylogenetic model for the Abyssinian Hare (Lepus habessinicus), the Ethiopian Hare (L. fagani), and the Ethiopian Highland Hare (L. starcki) and their evolutionary relationships to hares from Africa, Eurasia, and North America, we phylogenetically analysed mitochondrial ATPase subunit 6 (ATP6; n = 153 / 416bp) and nuclear transferrin (TF; n = 155 / 434bp) sequences of phenotypically determined individuals. For the hares from Ethiopia, genotype composition at twelve microsatellite loci (n = 107) was used to explore both interspecific gene pool separation and levels of current hybridization, as has been observed in some other Lepus species. For phylogenetic analyses ATP6 and TF sequences of Lepus species from South and North Africa (L. capensis, L. saxatilis), the Anatolian peninsula and Europe (L. europaeus, L. timidus) were also produced and additional TF sequences of 18 Lepus species retrieved from GenBank were included as well. Median joining networks, neighbour joining, maximum likelihood analyses, as well as Bayesian inference resulted in similar models of evolution of the three species from Ethiopia for the ATP6 and TF sequences, respectively. The Ethiopian species are, however, not monophyletic, with signatures of contemporary uni- and bidirectional mitochondrial introgression and/ or shared ancestral polymorphism. Lepus habessinicus carries mtDNA distinct from South African L. capensis and North African L. capensis sensu lato; that finding is not in line with earlier suggestions of its conspecificity with L. capensis. Lepus starcki has mtDNA distinct from L. capensis and L. europaeus, which is not in line with earlier suggestions to include it either in L. capensis or L. europaeus. Lepus fagani shares mitochondrial haplotypes with the other two species from Ethiopia, despite its distinct phenotypic and microsatellite differences; moreover, it is not represented by a species-specific mitochondrial haplogroup, suggesting considerable mitochondrial capture by the other species from Ethiopia or species from other parts of Africa. Both mitochondrial and nuclear sequences indicate close phylogenetic relationships among all three Lepus species from Ethiopia, with L. fagani being surprisingly tightly connected to L. habessinicus. TF sequences suggest close evolutionary relationships between the three Ethiopian species and Cape hares from South and North Africa; they further suggest that hares from Ethiopia hold a position ancestral to many Eurasian and North American species.
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Affiliation(s)
- Zelalem Tolesa
- Department of Biology, Hawassa University, Hawassa, Ethiopia
- Zoologisches Institut, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Endashaw Bekele
- Department of Microbial, Cellular, and Molecular Biology, Addis Ababa University, Addis Ababa, Ethiopia
| | - Kassahun Tesfaye
- Department of Microbial, Cellular, and Molecular Biology, Addis Ababa University, Addis Ababa, Ethiopia
- Centre of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia
| | - Hichem Ben Slimen
- Institut Supérieur de Biotechnologie de Béja, Avenue Habib Bourguiba, Béja, Tunisia
| | - Juan Valqui
- Zoologisches Institut, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
| | - Abebe Getahun
- Department of Zoological Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Günther B. Hartl
- Zoologisches Institut, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
| | - Franz Suchentrunk
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, Vienna, Austria
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