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For: Våge S, Bratbak G, Egge J, Heldal M, Larsen A, Norland S, Lund Paulsen M, Pree B, Sandaa RA, Skjoldal EF, Tsagaraki TM, Øvreås L, Thingstad TF. Simple models combining competition, defence and resource availability have broad implications in pelagic microbial food webs. Ecol Lett 2018;21:1440-1452. [PMID: 30014593 DOI: 10.1111/ele.13122] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 04/11/2018] [Accepted: 06/13/2018] [Indexed: 01/07/2023]
Number Cited by Other Article(s)
1
Peng Q, Quan L, Zheng H, Li J, Xie G. Analyzing the contribution of top-down and bottom-up methods to the construction of synthetic microbial communities in Jiuyao. Food Microbiol 2025;129:104759. [PMID: 40086988 DOI: 10.1016/j.fm.2025.104759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Revised: 01/16/2025] [Accepted: 02/19/2025] [Indexed: 03/16/2025]
2
Duan X, Liu L, Jiang Z, Zhang X, Zhang H, Zhang Y, Liu Q. Centennial trends in human and climate influences on sediment-associated microorganisms in an oligotrophic lake. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025;385:125618. [PMID: 40334408 DOI: 10.1016/j.jenvman.2025.125618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2025] [Revised: 04/25/2025] [Accepted: 04/29/2025] [Indexed: 05/09/2025]
3
Hutchings B, López-Legentil S, Stefaniak L, Nydam M, Erwin PM. Microbial Distortion? Impacts of Delayed Preservation on Microbiome Diversity and Composition in a Marine Invertebrate. Microbiologyopen 2025;14:e70019. [PMID: 40375452 DOI: 10.1002/mbo3.70019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 04/07/2025] [Accepted: 05/01/2025] [Indexed: 05/18/2025]  Open
4
Peng Q, Zheng H, Quan L, Li S, Huang J, Li J, Xie G. Development of a flavor-oriented synthetic microbial community for pour-over rice wine: A comprehensive microbial community analysis. Food Microbiol 2025;126:104677. [PMID: 39638446 DOI: 10.1016/j.fm.2024.104677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 10/27/2024] [Accepted: 10/29/2024] [Indexed: 12/07/2024]
5
Li X, Xu Z, Zhang S, Gao W, Dong Q, Guo F, Zhu Z, Yang W, Yang Z. Eutrophication-Driven Changes in Plankton Trophic Interactions: Insights from Trade-Offs in Functional Traits. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:744-755. [PMID: 39652070 DOI: 10.1021/acs.est.4c08067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2025]
6
Zhang Q, Li J, Tuo J, Liu S, Liu Y, Liu P, Ye L, Zhang XX. Long-term metagenomic insights into the roles of antiviral defense systems in stabilizing activated sludge bacterial communities. THE ISME JOURNAL 2025;19:wraf051. [PMID: 40096540 PMCID: PMC11980602 DOI: 10.1093/ismejo/wraf051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 02/05/2025] [Accepted: 03/13/2025] [Indexed: 03/19/2025]
7
Imbert T, Poggiale JC, Gauduchon M. Intra-specific diversity and adaptation modify regime shifts dynamics under environmental change. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2024;21:7783-7804. [PMID: 39807053 DOI: 10.3934/mbe.2024342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
8
Kiørboe T. Organismal trade-offs and the pace of planktonic life. Biol Rev Camb Philos Soc 2024;99:1992-2002. [PMID: 38855937 DOI: 10.1111/brv.13108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 05/27/2024] [Accepted: 05/29/2024] [Indexed: 06/11/2024]
9
Landor LAI, Tjendra J, Erstad K, Krabberød AK, Töpper JP, Våge S. At what cost? The impact of bacteriophage resistance on the growth kinetics and protein synthesis of Escherichia coli. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024;16:e70046. [PMID: 39562842 PMCID: PMC11576411 DOI: 10.1111/1758-2229.70046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 10/25/2024] [Indexed: 11/21/2024]
10
Réveillon T, Becks L. Trade-offs between defense and competitive traits in a planktonic predator-prey system. Ecology 2024:e4456. [PMID: 39468750 DOI: 10.1002/ecy.4456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 06/25/2024] [Accepted: 07/25/2024] [Indexed: 10/30/2024]
11
Kiørboe T. Predation in a Microbial World: Mechanisms and Trade-Offs of Flagellate Foraging. ANNUAL REVIEW OF MARINE SCIENCE 2024;16:361-381. [PMID: 37368955 DOI: 10.1146/annurev-marine-020123-102001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2023]
12
Taniguchi DAA, Menden-Deuer S. Planktonic predator selectivity: Eating local with global implications. Proc Natl Acad Sci U S A 2023;120:e2317302120. [PMID: 37967209 PMCID: PMC10691229 DOI: 10.1073/pnas.2317302120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2023]  Open
13
Landry MR, Stukel MR, Selph KE, Goericke R. Coexisting picoplankton experience different relative grazing pressures across an ocean productivity gradient. Proc Natl Acad Sci U S A 2023;120:e2220771120. [PMID: 37871180 PMCID: PMC10622918 DOI: 10.1073/pnas.2220771120] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 08/30/2023] [Indexed: 10/25/2023]  Open
14
Burian A, Gruber-Dorninger M, Schweichart J, Yasindi A, Bulling M, Jirsa F, Winter C, Muia AW, Schagerl M. Drivers of microbial food-web structure along productivity gradients. Proc Biol Sci 2023;290:20231531. [PMID: 37876193 PMCID: PMC10598424 DOI: 10.1098/rspb.2023.1531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 09/26/2023] [Indexed: 10/26/2023]  Open
15
Liu ZL, Hu EZ, Niu DK. Investigating the Relationship between CRISPR-Cas Content and Growth Rate in Bacteria. Microbiol Spectr 2023;11:e0340922. [PMID: 37022199 PMCID: PMC10269591 DOI: 10.1128/spectrum.03409-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 03/11/2023] [Indexed: 04/07/2023]  Open
16
Dang Z, Luo Z, Wang S, Liao Y, Jiang Z, Zhu X, Ji G. Using hierarchical stable isotope to reveal microbial food web structure and trophic transfer efficiency differences during lake melt season. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;842:156893. [PMID: 35753488 DOI: 10.1016/j.scitotenv.2022.156893] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 05/31/2022] [Accepted: 06/19/2022] [Indexed: 06/15/2023]
17
Competition-defense trade-offs in the microbial world. Proc Natl Acad Sci U S A 2022;119:e2213092119. [PMID: 36044539 PMCID: PMC9477406 DOI: 10.1073/pnas.2213092119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
18
Hawlena H, Garrido M, Cohen C, Halle S, Cohen S. Bringing the Mechanistic Approach Back to Life: A Systematic Review of the Experimental Evidence for Coexistence and Four of Its Classical Mechanisms. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.898074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
19
Pourhasanzade F, Iyer S, Tjendra J, Landor L, Våge S. Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence. PLoS Comput Biol 2022;18:e1010228. [PMID: 35675415 PMCID: PMC9212155 DOI: 10.1371/journal.pcbi.1010228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 06/21/2022] [Accepted: 05/17/2022] [Indexed: 11/19/2022]  Open
20
Karwautz C, Zhou Y, Kerros ME, Weinbauer MG, Griebler C. Bottom-Up Control of the Groundwater Microbial Food-Web in an Alpine Aquifer. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.854228] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
21
Hawlena H. Coexistence research requires more interdisciplinary communication. Ecol Evol 2022;12:e8914. [PMID: 35592068 PMCID: PMC9101577 DOI: 10.1002/ece3.8914] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 04/06/2022] [Accepted: 04/20/2022] [Indexed: 12/30/2022]  Open
22
Predation increases multiple components of microbial diversity in activated sludge communities. THE ISME JOURNAL 2022;16:1086-1094. [PMID: 34853477 PMCID: PMC8941047 DOI: 10.1038/s41396-021-01145-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 10/01/2021] [Accepted: 10/18/2021] [Indexed: 01/04/2023]
23
Foraging trade-offs, flagellar arrangements, and flow architecture of planktonic protists. Proc Natl Acad Sci U S A 2021;118:2009930118. [PMID: 33431666 DOI: 10.1073/pnas.2009930118] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Grønning J, Kiørboe T. Diatom defence: Grazer induction and cost of shell‐thickening. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13635] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
25
Burian A, Nielsen JM, Hansen T, Bermudez R, Winder M. The potential of fatty acid isotopes to trace trophic transfer in aquatic food-webs. Philos Trans R Soc Lond B Biol Sci 2020;375:20190652. [PMID: 32536314 DOI: 10.1098/rstb.2019.0652] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
26
Thingstad TF, Våge S. Host-virus-predator coexistence in a grey-box model with dynamic optimization of host fitness. THE ISME JOURNAL 2019;13:3102-3111. [PMID: 31527663 PMCID: PMC6864060 DOI: 10.1038/s41396-019-0496-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Revised: 08/01/2019] [Accepted: 08/15/2019] [Indexed: 11/09/2022]
27
Talmy D, Beckett SJ, Taniguchi DAA, Brussaard CPD, Weitz JS, Follows MJ. An empirical model of carbon flow through marine viruses and microzooplankton grazers. Environ Microbiol 2019;21:2171-2181. [PMID: 30969467 DOI: 10.1111/1462-2920.14626] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Revised: 04/03/2019] [Accepted: 04/08/2019] [Indexed: 12/13/2022]
28
Cadier M, Andersen KH, Visser AW, Kiørboe T. Competition–defense tradeoff increases the diversity of microbial plankton communities and dampens trophic cascades. OIKOS 2019. [DOI: 10.1111/oik.06101] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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