1
|
Dopman EB, Shaw KL, Servedio MR, Butlin RK, Smadja CM. Coupling of Barriers to Gene Exchange: Causes and Consequences. Cold Spring Harb Perspect Biol 2024; 16:a041432. [PMID: 38191516 PMCID: PMC11293547 DOI: 10.1101/cshperspect.a041432] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
Coupling has emerged as a concept to describe the transition from differentiated populations to newly evolved species through the strengthening of reproductive isolation. However, the term has been used in multiple ways, and relevant processes have sometimes not been clearly distinguished. Here, we synthesize existing uses of the concept of coupling and find three main perspectives: (1) coupling as the build-up of linkage disequilibrium among loci underlying barriers to gene exchange, (2) coupling as the build-up of genome-wide linkage disequilibrium, and (3) coupling as the process generating a coincidence of distinct barrier effects. We compare and contrast these views, show the diverse processes involved and the complexity of the relationships among recombination, linkage disequilibrium, and reproductive isolation, and, finally, we emphasize how each perspective can guide new directions in speciation research. Although the importance of coupling for evolutionary divergence and speciation is well established, many theoretical and empirical questions remain unanswered.
Collapse
Affiliation(s)
- Erik B Dopman
- Department of Biology, Tufts University, Medford, Massachusetts 02155, USA
| | - Kerry L Shaw
- Department of Neurobiology and Behavior, Cornell University, Ithaca, New York 14853, USA
| | - Maria R Servedio
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | - Roger K Butlin
- Ecology and Evolutionary Biology, School of Biosciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom
- Department of Marine Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Carole M Smadja
- Institut des Sciences de l'Evolution de Montpellier ISEM, Universite de Montpellier, CNRS, IRD, Montpellier 34095, France
| |
Collapse
|
2
|
Li B, Dopman EB, Dong Y, Yang Z. Forecasting habitat suitability and niche shifts of two global maize pests: Ostrinia furnacalis and Ostrinia nubilalis (Lepidoptera: Crambidae). PEST MANAGEMENT SCIENCE 2024. [PMID: 38924623 DOI: 10.1002/ps.8257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 06/01/2024] [Accepted: 06/04/2024] [Indexed: 06/28/2024]
Abstract
BACKGROUND Ostrinia furnacalis (ACB) and Ostrinia nubilalis (ECB) are devastating pests of the agricultural crop maize worldwide. However, little is known about their potential distribution and niche shifts during their global invasion. Since long-term selection to past climate variability has shaped their historical niche breadth, such niche shifts may provide an alternative basis for understanding their responses to present and future climate change. By integrating the niche unfilling, stability, and expansion situations into a single framework, our study quantifies the patterns of niche shift in the spatial distribution of these two pests during the different periods. RESULTS Our results show that the overall suitable habitats of ACB and ECB in the future decrease but highly and extremely suitable habitat will become more widespread, suggesting these two insects may occur more frequently in specific regions. Compared with Southeast Asia and Australia, the ACB niche in China exhibited expansion rather than unfilling. For ECB, initial niches have a tendency to be retained in Eurasia despite there also being potential for expansion in North America. The niche equivalency and similarity test results further indicate that niche shifts were common for both ACB and ECB in different survival regions during their colonization of new habitat and their suitable habitat changes during the paleoclimate were associated with climatic changes. CONCLUSIONS These findings improve our understanding of the ecological characteristics of ACB and ECB worldwide, and will be useful in the development of prevention and control strategies for two insect pests worldwide. © 2024 Society of Chemical Industry.
Collapse
Affiliation(s)
- Bing Li
- College of Plant Protection, Northwest A&F University, Yangling, China
- Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, Northwest A&F University, Yangling, China
| | - Erik B Dopman
- Department of Biology, Tufts University, Medford, MA, USA
| | - Yanling Dong
- College of Plant Protection, Northwest A&F University, Yangling, China
| | - Zhaofu Yang
- College of Plant Protection, Northwest A&F University, Yangling, China
- Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, Northwest A&F University, Yangling, China
| |
Collapse
|
3
|
Berdan EL, Barton NH, Butlin R, Charlesworth B, Faria R, Fragata I, Gilbert KJ, Jay P, Kapun M, Lotterhos KE, Mérot C, Durmaz Mitchell E, Pascual M, Peichel CL, Rafajlović M, Westram AM, Schaeffer SW, Johannesson K, Flatt T. How chromosomal inversions reorient the evolutionary process. J Evol Biol 2023; 36:1761-1782. [PMID: 37942504 DOI: 10.1111/jeb.14242] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 09/13/2023] [Accepted: 10/05/2023] [Indexed: 11/10/2023]
Abstract
Inversions are structural mutations that reverse the sequence of a chromosome segment and reduce the effective rate of recombination in the heterozygous state. They play a major role in adaptation, as well as in other evolutionary processes such as speciation. Although inversions have been studied since the 1920s, they remain difficult to investigate because the reduced recombination conferred by them strengthens the effects of drift and hitchhiking, which in turn can obscure signatures of selection. Nonetheless, numerous inversions have been found to be under selection. Given recent advances in population genetic theory and empirical study, here we review how different mechanisms of selection affect the evolution of inversions. A key difference between inversions and other mutations, such as single nucleotide variants, is that the fitness of an inversion may be affected by a larger number of frequently interacting processes. This considerably complicates the analysis of the causes underlying the evolution of inversions. We discuss the extent to which these mechanisms can be disentangled, and by which approach.
Collapse
Affiliation(s)
- Emma L Berdan
- Bioinformatics Core, Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, USA
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Nicholas H Barton
- Institute of Science and Technology Austria (ISTA), Klosterneuburg, Austria
| | - Roger Butlin
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
- Ecology and Evolutionary Biology, School of Bioscience, The University of Sheffield, Sheffield, UK
| | - Brian Charlesworth
- Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
| | - Rui Faria
- CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Inês Fragata
- CHANGE - Global Change and Sustainability Institute/Animal Biology Department, cE3c - Center for Ecology, Evolution and Environmental Changes, Faculty of Sciences, University of Lisbon, Lisbon, Portugal
| | | | - Paul Jay
- Center for GeoGenetics, University of Copenhagen, Copenhagen, Denmark
| | - Martin Kapun
- Center for Anatomy and Cell Biology, Medical University of Vienna, Vienna, Austria
- Central Research Laboratories, Natural History Museum of Vienna, Vienna, Austria
| | - Katie E Lotterhos
- Department of Marine and Environmental Sciences, Northeastern University, Boston, Massachusetts, USA
| | - Claire Mérot
- UMR 6553 Ecobio, Université de Rennes, OSUR, CNRS, Rennes, France
| | - Esra Durmaz Mitchell
- Department of Biology, University of Fribourg, Fribourg, Switzerland
- Functional Genomics & Metabolism Research Unit, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark
| | - Marta Pascual
- Departament de Genètica, Microbiologia i Estadística, Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain
| | - Catherine L Peichel
- Division of Evolutionary Ecology, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Marina Rafajlović
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
- Linnaeus Centre for Marine Evolutionary Biology, University of Gothenburg, Gothenburg, Sweden
| | - Anja M Westram
- Institute of Science and Technology Austria (ISTA), Klosterneuburg, Austria
- Faculty of Biosciences and Aquaculture, Nord University, Bodø, Norway
| | - Stephen W Schaeffer
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania, USA
| | - Kerstin Johannesson
- Linnaeus Centre for Marine Evolutionary Biology, University of Gothenburg, Gothenburg, Sweden
- Tjärnö Marine Laboratory, Department of Marine Sciences, University of Gothenburg, Strömstad, Sweden
| | - Thomas Flatt
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| |
Collapse
|
4
|
Firneno TJ, Semenov G, Dopman EB, Taylor SA, Larson EL, Gompert Z. Quantitative Analyses of Coupling in Hybrid Zones. Cold Spring Harb Perspect Biol 2023; 15:a041434. [PMID: 37739809 PMCID: PMC10691479 DOI: 10.1101/cshperspect.a041434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/24/2023]
Abstract
In hybrid zones, whether barrier loci experience selection mostly independently or as a unit depends on the ratio of selection to recombination as captured by the coupling coefficient. Theory predicts a sharper transition between an uncoupled and coupled system when more loci affect hybrid fitness. However, the extent of coupling in hybrid zones has rarely been quantified. Here, we use simulations to characterize the relationship between the coupling coefficient and variance in clines across genetic loci. We then reanalyze 25 hybrid zone data sets and find that cline variances and estimated coupling coefficients form a smooth continuum from high variance and weak coupling to low variance and strong coupling. Our results are consistent with low rates of hybridization and a strong genome-wide barrier to gene flow when the coupling coefficient is much greater than 1, but also suggest that this boundary might be approached gradually and at a near constant rate over time.
Collapse
Affiliation(s)
- Thomas J Firneno
- Department of Biology, University of Denver, Denver, Colorado 80208, USA
| | - Georgy Semenov
- Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, Colorado 80211, USA
| | - Erik B Dopman
- Department of Biology, Tufts University, Medford, Massachusetts 02155, USA
| | - Scott A Taylor
- Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, Colorado 80211, USA
| | - Erica L Larson
- Department of Biology, University of Denver, Denver, Colorado 80208, USA
| | - Zachariah Gompert
- Department of Biology, Utah State University, Logan, Utah 84321, USA
| |
Collapse
|
5
|
Enos AN, Velikaneye BA, Kozak GM. Temperature impacts how sugar resources alter reproductive investment in the European corn borer moth. ENVIRONMENTAL ENTOMOLOGY 2023; 52:853-862. [PMID: 37616563 DOI: 10.1093/ee/nvad082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 07/17/2023] [Accepted: 08/11/2023] [Indexed: 08/26/2023]
Abstract
Investment of resources in reproduction can be based on individual state, environmental conditions, and perceived mate quality. Changing climates impact many aspects of the environment by increasing temperature, decreasing precipitation, and altering resource availability. Access to high-quality resources is known to improve survival under elevated temperatures, but its effects on reproduction in warming environments are largely unexplored. Here, we investigate the effects of elevated temperature and sugar resources on reproductive output within and between E- and Z-pheromone strains of the European corn borer moth [Ostrinia nubilalis (Hübner) (Lepidoptera: Crambidae)]. Corn borers prefer mates from their own strain, with reproductive output being highest for within-strain pairs. In this experiment, mating pairs were provided with a 20% sugar solution while exposed to either ambient (23 °C) or elevated (28 °C) temperatures. We measured reproductive investment as the total number of egg clusters laid 3 days after pairing. We found that at ambient temperature, sugar supplementation resulted in high investment across all pairs, including with usually unpreferred mates. However, when sugar was provided at elevated temperature, more egg clusters were laid in pairs with preferred (within-strain) mates as compared to less preferred (between-strain) mates. These results differ from temperature effects in the absence of sugar and suggest that the effects of sugar on reproductive investment in less preferred mates depend on temperature. Changes in investment may be due to differences in the allocation of extra resources to thermoregulation at elevated temperatures. Our results suggest the possibility of interactive effects of temperature and resources on sexual selection.
Collapse
Affiliation(s)
- Arielle N Enos
- Department of Biology, University of Massachusetts Dartmouth, Dartmouth, MA 02747, USA
| | - Brittany A Velikaneye
- Department of Biology, University of Massachusetts Dartmouth, Dartmouth, MA 02747, USA
| | - Genevieve M Kozak
- Department of Biology, University of Massachusetts Dartmouth, Dartmouth, MA 02747, USA
| |
Collapse
|
6
|
Lackey ACR, Murray AC, Mirza NA, Powell THQ. The role of sexual isolation during rapid ecological divergence: Evidence for a new dimension of isolation in Rhagoletis pomonella. J Evol Biol 2023. [PMID: 37173822 DOI: 10.1111/jeb.14179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 03/05/2023] [Accepted: 03/23/2023] [Indexed: 05/15/2023]
Abstract
The pace of divergence and likelihood of speciation often depends on how and when different types of reproductive barriers evolve. Questions remain about how reproductive isolation evolves after initial divergence. We tested for the presence of sexual isolation (reduced mating between populations due to divergent mating preferences and traits) in Rhagoletis pomonella flies, a model system for incipient ecological speciation. We measured the strength of sexual isolation between two very recently diverged (~170 generations) sympatric populations, adapted to different host fruits (hawthorn and apple). We found that flies from both populations were more likely to mate within than between populations. Thus, sexual isolation may play an important role in reducing gene flow allowed by early-acting ecological barriers. We also tested how warmer temperatures predicted under climate change could alter sexual isolation and found that sexual isolation was markedly asymmetric under warmer temperatures - apple males and hawthorn females mated randomly while apple females and hawthorn males mated more within populations than between. Our findings provide a window into the early speciation process and the role of sexual isolation after initial ecological divergence, in addition to examining how environmental conditions could shape the likelihood of further divergence.
Collapse
Affiliation(s)
- Alycia C R Lackey
- University of Louisville, Louisville, Kentucky, USA
- Binghamton University, Binghamton, New York, USA
| | | | | | | |
Collapse
|
7
|
Abstract
Diapause, a stage-specific developmental arrest, is widely exploited by insects to bridge unfavorable seasons. Considerable progress has been made in understanding the ecology, physiology and evolutionary implications of insect diapause, yet intriguing questions remain. A more complete understanding of diapause processes on Earth requires a better geographic spread of investigations, including more work in the tropics and at high latitudes. Questions surrounding energy management and trade-offs between diapause and non-diapause remain understudied. We know little about how maternal effects direct the diapause response, and regulators of prolonged diapause are also poorly understood. Numerous factors that were recently linked to diapause are still waiting to be placed in the regulatory network leading from photoreception to engagement of the diapause program. These factors include epigenetic processes and small noncoding RNAs, and emerging data also suggest a role for the microbiome in diapause regulation. Another intriguing feature of diapause is the complexity of the response, resulting in a diverse suite of responses that comprise the diapause syndrome. Select transcription factors likely serve as master switches turning on these diverse responses, but we are far from understanding the full complexity. The richness of species displaying diapause offers a platform for seeking common components of a 'diapause toolbox'. Across latitudes, during invasion events and in a changing climate, diapause offers grand opportunities to probe evolutionary change and speciation. At a practical level, diapause responses can be manipulated for insect control and long-term storage. Diapausing insects also contain a treasure trove of pharmacological compounds and offer promising models for human health.
Collapse
Affiliation(s)
- David L Denlinger
- Departments of Entomology and Evolution, Ecology and Organismal Biology, Ohio State University, Columbus, OH 43210, USA
| |
Collapse
|