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Zivanovic G, Arenas C, Mestres F. Temporal and habitat adaptations in Drosophila subobscura populations: changes in chromosomal inversions. Genetica 2025; 153:16. [PMID: 40278938 PMCID: PMC12031780 DOI: 10.1007/s10709-025-00232-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2025] [Accepted: 04/10/2025] [Indexed: 04/26/2025]
Abstract
In insects, chromosomal inversion polymorphism has been related with different adaptations, including global warming. Regarding this environmental change, Drosophila subobscura stands out as a useful model species due to its rich inversion polymorphism covering the whole karyotype. The main aims of this research were to analyze the differentiation of this polymorphism in Jastrebac Mt. (Serbia) depending on the different habitats (beech and oak forests) and over time. These latter changes were studied in relation to climatic variables (mean, minimum and maximum temperatures, humidity and rainfall). Microdifferentiation was observed between beech and oak forests, mainly for the A and O chromosomes. However, the changes over time turned out to be larger than those due to habitat. In Jastrebac Mt., temperatures increased over time, with this increase being significant for mean and minimum one. The Multidimensional Scaling analysis showed a relation between chromosomal inversions and temperatures (mainly minimum) in Jastrebac Mt. and other Serbian populations of D. subobscura. In beech forest of Jastrebac Mt., the Chromosomal Thermal Index increased over time from 1990 to 1994, but showing a possible stabilization in 2023. This result was observed in other studied Serbian populations. Although those are preliminary results, it might hypothesize that there may be a threshold for the action of natural selection, increasing 'warm' adaptive inversions and decreasing 'cold' ones. The possible reasons for this hypothesis are also discussed.
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Affiliation(s)
- Goran Zivanovic
- Department of Evolutionary Biology, Institute for Biological Research "Sinisa Stankovic" - National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, Belgrade, 11000, Serbia
| | - Concepció Arenas
- Departament de Genètica, Microbiologia i Estadística, Secció d'Estadística, Universitat de Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain
| | - Francesc Mestres
- Departament de Genètica, Microbiologia i Estadística, Secció de Genètica Biomèdica, Evolutiva i Desenvolupament - IRBio (Institut de Recerca per la Biodiversitat), Universitat de Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain.
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2
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Pita S, Rico-Porras JM, Lorite P, Mora P. Genome assemblies and other genomic tools for understanding insect adaptation. CURRENT OPINION IN INSECT SCIENCE 2025; 68:101334. [PMID: 39842546 DOI: 10.1016/j.cois.2025.101334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 11/26/2024] [Accepted: 01/17/2025] [Indexed: 01/24/2025]
Abstract
Insects, the most diverse group of animals, exhibit remarkable adaptability, playing both crucial and problematic roles in ecosystems. Recent advancements in genomic technologies, such as high-throughput sequencing, have provided unprecedented insights into the genetic foundations of insect adaptation. This review explores key methodologies, including de novo and reference-guided genome assemblies, and highlights cutting-edge technologies like second- and third-generation sequencing and hybrid techniques. The article delves into the genetic mechanisms underlying insect adaptations, focusing on structural variants. Case studies, such as the Anopheles gambiae genome assembly and the genomic research on Drosophila melanogaster, demonstrate the practical applications of these technologies in understanding pesticide resistance, climate adaptation, and other evolutionary traits. This review underscores the transformative role of genomic tools in insect research, with significant implications for pest management, agriculture, and biodiversity conservation.
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Affiliation(s)
- Sebastián Pita
- Evolutionary Genetic Section, Faculty of Science, University of the Republic, Iguá 4225, Montevideo 11400, Uruguay
| | - José M Rico-Porras
- Department of Experimental Biology, Genetics Area, University of Jaén, Paraje las Lagunillas s/n, 23071 Jaén, Spain
| | - Pedro Lorite
- Department of Experimental Biology, Genetics Area, University of Jaén, Paraje las Lagunillas s/n, 23071 Jaén, Spain
| | - Pablo Mora
- Department of Experimental Biology, Genetics Area, University of Jaén, Paraje las Lagunillas s/n, 23071 Jaén, Spain; Department of General and Applied Biology, Institute of Biosciences/IB, UNESP - São Paulo State University, Rio Claro, São Paulo 13506-900, Brazil.
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3
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Gautier A, Laval V, Balesdent MH. MPSeqM, a tool combining multiplex PCR and high-throughput sequencing to study the polymorphism of eight Leptosphaeria maculans avirulence genes and its application to field surveys in France. BMC Microbiol 2025; 25:159. [PMID: 40119263 PMCID: PMC11927322 DOI: 10.1186/s12866-025-03855-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Accepted: 02/28/2025] [Indexed: 03/24/2025] Open
Abstract
CONTEXT Leptosphaeria maculans is a fungal pathogen causing stem canker of oilseed rape (Brassica napus). The disease is mainly controlled by the deployment of varieties with major resistance genes (Rlm). Rlm genes can rapidly become ineffective following the selection of virulent isolates of the fungus, i.e. with mutations, including deletions, in the corresponding avirulence genes (AvrLm). Reasoned and durable management of Rlm genes relies on the detection and monitoring of virulent isolates in field populations. Based on previous knowledge of AvrLm gene polymorphism, we developed a tool combining multiplex PCR and Illumina sequencing to characterize allelic variants for eight AvrLm genes in field L. maculans populations. RESULTS We tested the method on DNA pools of 71 characterised L. maculans isolates and of leaf spots from 32 L. maculans isolates. After multiplex-PCR and sequencing with MiSeq technology, reads were mapped on an AvrLm sequence database. Data were filtered using thresholds defined from control samples included in each sequencing run. Proportions of each allelic variant per gene, including deletions, perfectly correlated with expected ones. The method was then applied to around 1300 symptoms (42 pools of mainly 32 leaf spots) from nine B. napus fields. The proportions of virulent isolates estimated by sequencing leaf spot pools perfectly correlated with those estimated by pathotyping single isolates. In addition, the proportions of allelic variants determined at the national scale also correlated with those previously determined following individual sequencing of AvrLm genes in a representative collection of isolates. Finally, the method also allowed us to detect still undescribed and rare allelic variants. CONCLUSIONS Despite the diversity of mechanisms generating virulent isolates and the gene-dependent diversity of AvrLm gene polymorphism, the method proved suitable for large-scale and regular monitoring of L. maculans populations, which will facilitate the deployment of effective Rlm genes and the early detection of resistance breakdowns.
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Affiliation(s)
- Angélique Gautier
- INRAE, UR Bioger, Université Paris-Saclay, Place de L'Agronomie, Palaiseau Cedex, CS, 80022, 91120, France
| | - Valérie Laval
- INRAE, UR Bioger, Université Paris-Saclay, Place de L'Agronomie, Palaiseau Cedex, CS, 80022, 91120, France.
| | - Marie-Hélène Balesdent
- INRAE, UR Bioger, Université Paris-Saclay, Place de L'Agronomie, Palaiseau Cedex, CS, 80022, 91120, France
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4
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Nath BB. Editorial: Physiological adaptations of insects exposed to different stress conditions, volume II. Front Physiol 2025; 16:1582575. [PMID: 40171112 PMCID: PMC11958953 DOI: 10.3389/fphys.2025.1582575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2025] [Accepted: 03/10/2025] [Indexed: 04/03/2025] Open
Affiliation(s)
- Bimalendu B. Nath
- Stress Biology Research Laboratory, Department of Zoology, Savitribai Phule Pune University, Pune, India
- Faculty of Science, MIE-SPPU Institute of Higher Education, Doha, Qatar
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5
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McCulloch GA, Foster BJ, Kroos GC, Foster Y, Ni S, Vogel MFS, Waters JM. Dispersal-fecundity trade-offs in wild insect populations. J Evol Biol 2025; 38:430-436. [PMID: 39663214 DOI: 10.1093/jeb/voae155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 11/04/2024] [Accepted: 12/10/2024] [Indexed: 12/13/2024]
Abstract
Wing reduction is a common feature of upland insect communities. This phenomenon is thought to be primarily driven by selection against flight, which is typically unfavourable in upland environments due to high winds and cold temperatures. In some insect taxa, wing reduction has been directly linked to increased fecundity. However, few studies have directly tested for shifts in fecundity linked to flight musculature. Here, we test for dispersal-fecundity trade-offs in the widespread subalpine stonefly Zelandoperla fenestrata. Our analysis of 450 stoneflies across 81 localities reveals significant dispersal-fecundity trade-offs. Specifically, we identify a positive association between the size of their flight muscles and the length of their wings, and a negative association between wing length and ovarian mass. Furthermore, we found a significant negative relationship between flight musculature and ovary mass. These results represent a rare example of a dispersal-fecundity trade-off in the wild and illustrate that such trade-offs can potentially involve corresponding reductions in both flight musculature and wing development. Our findings suggest that widespread taxa subject to variable environmental conditions may benefit from flexible allocation of energetic resources.
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Affiliation(s)
| | - Brodie J Foster
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Gracie C Kroos
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Yasmin Foster
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Steven Ni
- Department of Zoology, University of Otago, Dunedin, New Zealand
- Department of Mathematics and Statistics, University of Otago, Dunedin, New Zealand
| | - Marianne F S Vogel
- Department of Zoology, University of Otago, Dunedin, New Zealand
- Institut Agro Rennes-Angers, Rennes, France
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6
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Gupta A, Nair S. Epigenetic processes in insect adaptation to environmental stress. CURRENT OPINION IN INSECT SCIENCE 2025; 67:101294. [PMID: 39521342 DOI: 10.1016/j.cois.2024.101294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 09/23/2024] [Accepted: 10/29/2024] [Indexed: 11/16/2024]
Abstract
Insects exhibit remarkable adaptability to a wide range of environmental stressors, including temperature fluctuations, pathogens, and changes in diet. This adaptability is often driven by epigenetic processes, which regulate gene expression without altering the underlying DNA sequence. This review provides a comprehensive overview of these epigenetic processes in insect adaptation, highlighting their impact on development, behaviour, and stress resilience. Understanding these mechanisms is essential for pest management and conservation efforts, offering insights into the rapid adaptive capacity of insects. By examining recent studies on epigenetics in insects, we aim to elucidate the molecular underpinnings of their adaptation and suggest future research directions in this evolving field.
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Affiliation(s)
- Ayushi Gupta
- ICAR-National Institute for Plant Biotechnology, LBS Centre, Pusa Campus, New Delhi 110012, India
| | - Suresh Nair
- Plant-Insect Interaction Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), Aruna Asaf Ali Marg, New Delhi 110067, India.
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7
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Assis BA, Sullivan AP, Marciniak S, Bergey CM, Garcia V, Szpiech ZA, Langkilde T, Perry GH. Genomic signatures of adaptation in native lizards exposed to human-introduced fire ants. Nat Commun 2025; 16:89. [PMID: 39746982 PMCID: PMC11695932 DOI: 10.1038/s41467-024-55020-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 11/25/2024] [Indexed: 01/04/2025] Open
Abstract
Understanding the process of genetic adaptation in response to human-mediated ecological change will help elucidate the eco-evolutionary impacts of human activity. In the 1930s red imported fire ants (Solenopsis invicta) were accidently introduced to the Southeastern USA, where today they are both venomous predators and toxic prey to native eastern fence lizards (Sceloporus undulatus). Here, we investigate potential lizard adaptation to invasive fire ants by generating whole-genome sequences from 420 lizards across three populations: one with long exposure to fire ants, and two unexposed populations. Signatures of positive selection exclusive to the exposed population overlap immune system, growth factor pathway, and morphological development genes. Among invaded lizards, longer limbs (used to remove stinging ants) are associated with increased survival. We identify alleles associated with longer limbs that are highly differentiated from the unexposed populations, a pattern counter to the pre-invasion latitudinal cline for limb lengths based on museum specimens. While we cannot rule out other environmental differences between populations driving these patterns, these results do constitute plausible genetic adaptations in lizards invaded by fire ants.
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Affiliation(s)
- Braulio A Assis
- Department of Biology, The Pennsylvania State University, University Park, PA, USA.
- Department of Anthropology, The Pennsylvania State University, University Park, PA, USA.
| | - Alexis P Sullivan
- Department of Biology, The Pennsylvania State University, University Park, PA, USA.
- Institute for Systems Genetics, NYU Langone Health, New York City, NY, USA.
| | - Stephanie Marciniak
- Department of Anthropology, The Pennsylvania State University, University Park, PA, USA
- Department of Anthropology, McMaster University, Hamilton, Ontario, Canada
| | - Christina M Bergey
- Department of Biology, The Pennsylvania State University, University Park, PA, USA
- Department of Anthropology, The Pennsylvania State University, University Park, PA, USA
- Department of Genetics, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
| | - Vanessa Garcia
- Department of Biology, The Pennsylvania State University, University Park, PA, USA
| | - Zachary A Szpiech
- Department of Biology, The Pennsylvania State University, University Park, PA, USA
- Institute for Computational and Data Sciences, The Pennsylvania State University, University Park, PA, USA
| | - Tracy Langkilde
- Department of Biology, The Pennsylvania State University, University Park, PA, USA.
- Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA.
| | - George H Perry
- Department of Biology, The Pennsylvania State University, University Park, PA, USA.
- Department of Anthropology, The Pennsylvania State University, University Park, PA, USA.
- Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA.
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8
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Mykhailenko A, Zieliński P, Bednarz A, Schlyter F, Andersson MN, Antunes B, Borowski Z, Krokene P, Melin M, Morales-García J, Müller J, Nowak Z, Schebeck M, Stauffer C, Viiri H, Zaborowska J, Babik W, Nadachowska-Brzyska K. Complex Genomic Landscape of Inversion Polymorphism in Europe's Most Destructive Forest Pest. Genome Biol Evol 2024; 16:evae263. [PMID: 39656753 DOI: 10.1093/gbe/evae263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2024] [Revised: 11/29/2024] [Accepted: 12/02/2024] [Indexed: 12/17/2024] Open
Abstract
In many species, polymorphic genomic inversions underlie complex phenotypic polymorphisms and facilitate local adaptation in the face of gene flow. Multiple polymorphic inversions can co-occur in a genome, but the prevalence, evolutionary significance, and limits to complexity of genomic inversion landscapes remain poorly understood. Here, we examine genome-wide genetic variation in one of Europe's most destructive forest pests, the spruce bark beetle Ips typographus, scan for polymorphic inversions, and test whether inversions are associated with key traits in this species. We analyzed 240 individuals from 18 populations across the species' European range and, using a whole-genome resequencing approach, identified 27 polymorphic inversions covering ∼28% of the genome. The inversions vary in size and in levels of intra-inversion recombination, are highly polymorphic across the species range, and often overlap, forming a complex genomic architecture. We found no support for mechanisms such as directional selection, overdominance, and associative overdominance that are often invoked to explain the presence of large inversion polymorphisms in the genome. This suggests that inversions are either neutral or maintained by the combined action of multiple evolutionary forces. We also found that inversions are enriched in odorant receptor genes encoding elements of recognition pathways for host plants, mates, and symbiotic fungi. Our results indicate that the genome of this major forest pest of growing social, political, and economic importance harbors one of the most complex inversion landscapes described to date and raise questions about the limits of intraspecific genomic architecture complexity.
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Affiliation(s)
- Anastasiia Mykhailenko
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
- Doctoral School of Exact and Natural Sciences, Jagiellonian University, 30-348 Kraków, Poland
| | - Piotr Zieliński
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Aleksandra Bednarz
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Fredrik Schlyter
- Chemical Ecology, Department of Plant Protection Biology, Swedish University of Agricultural Sciences Alnarp, 234 22 Lomma, Sweden
- ETM, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, 165 00 Praha, Czechia
| | | | - Bernardo Antunes
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Zbigniew Borowski
- Departament of Forest Ecology, Forest Research Institute, 05-090 Raszyn, Poland
| | - Paal Krokene
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research, 1433 Ås, Norway
| | - Markus Melin
- Forest Health and Bidiversity Group, Natural Resources Institute Finland, 80100 Joensuu, Finland
| | - Julia Morales-García
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
- Doctoral School of Exact and Natural Sciences, Jagiellonian University, 30-348 Kraków, Poland
| | - Jörg Müller
- Field Station Fabrikschleichach, Animal Ecology and Tropical Biology, Biocenter, University of Würzburg, 96181 Rauhenebrach, Germany
- Bavarian Forest National Park, 94481 Grafenau, Germany
| | - Zuzanna Nowak
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Martin Schebeck
- Institute of Forest Entomology, Forest Pathology and Forest Protection, Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences Vienna (BOKU), 1190 Vienna, Austria
| | - Christian Stauffer
- Institute of Forest Entomology, Forest Pathology and Forest Protection, Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences Vienna (BOKU), 1190 Vienna, Austria
| | - Heli Viiri
- UPM Forest, UPM-Kymmene, 33100 Tampere, Finland
| | - Julia Zaborowska
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Wiesław Babik
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
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Cui M, Roe AD, Boyle B, Keena M, Wu Y, Braswell WE, Smith MT, Gasman B, Shi J, Javal M, Roux G, Turgeon JJ, Hamelin R, Porth I. Tracking the North American Asian Longhorned Beetle Invasion With Genomics. Evol Appl 2024; 17:e70036. [PMID: 39568689 PMCID: PMC11576519 DOI: 10.1111/eva.70036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 09/02/2024] [Accepted: 09/25/2024] [Indexed: 11/22/2024] Open
Abstract
Biological invasions pose significant threats to ecological and economic stability, with invasive pests like the Asian longhorned beetle (Anoplophora glabripennis Motschulsky, ALB) causing substantial damage to forest ecosystems. Effective pest management relies on comprehensive knowledge of the insect's biology and invasion history. This study uses genomics to address these knowledge gaps and inform existing biosurveillance frameworks. We used 2768 genome-wide single nucleotide polymorphisms to compare invasive A. glabripennis populations in North America, using genomic variation to trace their sources of invasion and spread patterns, thereby refining our understanding of this species' invasion history. We found that most North American A. glabripennis infestations were distinct, resulting from multiple independent introductions from the native range. Following their introduction, all invasive populations experienced a genetic bottleneck which was followed by a population expansion, with a few also showing secondary spread to satellite infestations. Our study provides a foundation for a genome-based biosurveillance tool that can be used to clarify the origin of intercepted individuals, allowing regulatory agencies to strengthen biosecurity measures against this invasive beetle.
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Affiliation(s)
- Mingming Cui
- Institut de Biologie Intégrative et des Systèmes Université Laval Quebec City Quebec Canada
- Département des sciences du bois et de la forêt Université Laval Quebec City Quebec Canada
| | - Amanda D Roe
- Natural Resources Canada, Canadian Forest Service Great Lakes Forestry Centre Sault Ste. Marie Ontario Canada
| | - Brian Boyle
- Institut de Biologie Intégrative et des Systèmes Université Laval Quebec City Quebec Canada
| | - Melody Keena
- Northern Research Station, Forest Service United States Department of Agriculture Hamden Connecticut USA
| | - Yunke Wu
- Forest Pest Methods Laboratory, Plant Protection and Quarantine Science and Technology, Animal and Plant Health Inspection Service United States Department of Agriculture Buzzards Bay Massachusetts USA
| | - W Evan Braswell
- Insect Management and Molecular Diagnostics Laboratory, Plant Protection and Quarantine Science and Technology, Animal and Plant Health Inspection Service United States Department of Agriculture Edinburg Texas USA
| | - Michael T Smith
- Beneficial Insects Introduction Research Lab, Agricultural Research Service United States Department of Agriculture Newark Delaware USA
| | - Ben Gasman
- Canadian Food Inspection Agency Toronto Ontario Canada
| | - Juan Shi
- Key Laboratory for Silviculture and Conservation of Ministry of Education Beijing Forestry University Beijing China
| | - Marion Javal
- Institut National de la Recherche Agronomique, UR633 Zoologie Forestière Orléans France
- CBGP, IRD, CIRAD, INRAE, Institut Agro Montpellier Université de Montpellier Montpellier France
| | - Geraldine Roux
- Institut National de la Recherche Agronomique, UR633 Zoologie Forestière Orléans France
- Laboratoire Physiologie, Ecologie et Environnement P2E Université d'Orléans Orléans France
| | - Jean J Turgeon
- Natural Resources Canada, Canadian Forest Service Great Lakes Forestry Centre Sault Ste. Marie Ontario Canada
| | - Richard Hamelin
- Department of Forest & Conservation Sciences The University of British Columbia Vancouver British Columbia Canada
| | - Ilga Porth
- Institut de Biologie Intégrative et des Systèmes Université Laval Quebec City Quebec Canada
- Département des sciences du bois et de la forêt Université Laval Quebec City Quebec Canada
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10
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Ni S, McCulloch GA, Kroos GC, King TM, Dutoit L, Foster BJ, Hema K, Jandt JM, Peng M, Dearden PK, Waters JM. Human-driven evolution of color in a stonefly mimic. Science 2024; 386:453-458. [PMID: 39446930 DOI: 10.1126/science.ado5331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/20/2024] [Accepted: 08/27/2024] [Indexed: 10/26/2024]
Abstract
Rapid adaptation is thought to be critical for the survival of species under global change, but our understanding of human-induced evolution in the wild remains limited. We show that widespread deforestation has underpinned repeated color shifts in wild insect populations. Specifically, loss of forest has led to color changes across lineages that mimic the warning coloration of a toxic forest stonefly. Predation experiments suggest that the relative fitness of color phenotypes varies between forested and deforested habitats. Genomic and coloration analyses of 1200 specimens show repeated selection at the ebony locus controlling color polymorphism across lineages. These findings represent an example of human-driven evolution linked to altered species interactions, highlighting the possibility for populations to adapt rapidly in the wake of sudden environmental change.
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Affiliation(s)
- Steven Ni
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | | | - Gracie C Kroos
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | - Tania M King
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | - Ludovic Dutoit
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | - Brodie J Foster
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | - Kahu Hema
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | - Jennifer M Jandt
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
| | - Mei Peng
- University of Otago, Department of Food Science, 9016 Dunedin, New Zealand
| | - Peter K Dearden
- University of Otago, Genomics Aotearoa and Department of Biochemistry, 9016 Dunedin, New Zealand
| | - Jonathan M Waters
- University of Otago, Department of Zoology, 9016 Dunedin, New Zealand
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11
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Cross RL, Eckert CG. Is adaptation associated with long-term persistence beyond a geographic range limit? Evolution 2024; 78:1527-1538. [PMID: 38869498 DOI: 10.1093/evolut/qpae092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 05/04/2024] [Accepted: 06/11/2024] [Indexed: 06/14/2024]
Abstract
Adaptation to new habitats might facilitate species' range shifts in response to climate change. In 2005, we transplanted experimental populations of coastal dune plant Camissoniopsis cheiranthifolia into 4 sites within and 1 site beyond its poleward range limit. Beyond-range transplants had high fitness but often delayed reproduction. To test for adaptation associated with experimental range expansion, we transplanted descendants from beyond- and within-range populations after 10 generations in situ into 2 sites within the range, 1 at the range edge, and 2 sites beyond the range. We expected to detect adaptation to beyond-range conditions due to substantial genetic variation within experimental populations and environmental variation among sites. However, individuals from beyond-range experimental populations were not fitter than those from within the range when planted at either beyond-range site, indicating no adaptation to the beyond-range site or beyond-range environments in general. Beyond-range descendants also did not suffer lower fitness within the range. Although reproduction was again delayed beyond the range, late reproduction was not favored more strongly beyond than within the range, and beyond-range descendants did not delay reproduction more than within-range descendants. Persistence in beyond-range environments may not require adaptation, which could allow a rapid response to climate change.
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Affiliation(s)
- Regan L Cross
- Department of Biology, Queen's University, Kingston, ON, Canada
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12
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Cocciardi JM, Hoffman AM, Alvarado-Serrano DF, Anderson J, Blumstein M, Boehm EL, Bolin LG, Borokini IT, Bradburd GS, Branch HA, Brudvig LA, Chen Y, Collins SL, Des Marais DL, Gamba D, Hanan NP, Howard MM, Jaros J, Juenger TE, Kooyers NJ, Kottler EJ, Lau JA, Menon M, Moeller DA, Mozdzer TJ, Sheth SN, Smith M, Toll K, Ungerer MC, Vahsen ML, Wadgymar SM, Waananen A, Whitney KD, Avolio ML. The value of long-term ecological research for evolutionary insights. Nat Ecol Evol 2024; 8:1584-1592. [PMID: 39095611 DOI: 10.1038/s41559-024-02464-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Accepted: 06/11/2024] [Indexed: 08/04/2024]
Abstract
Scientists must have an integrative understanding of ecology and evolution across spatial and temporal scales to predict how species will respond to global change. Although comprehensively investigating these processes in nature is challenging, the infrastructure and data from long-term ecological research networks can support cross-disciplinary investigations. We propose using these networks to advance our understanding of fundamental evolutionary processes and responses to global change. For ecologists, we outline how long-term ecological experiments can be expanded for evolutionary inquiry, and for evolutionary biologists, we illustrate how observed long-term ecological patterns may motivate new evolutionary questions. We advocate for collaborative, multi-site investigations and discuss barriers to conducting evolutionary work at network sites. Ultimately, these networks offer valuable information and opportunities to improve predictions of species' responses to global change.
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Affiliation(s)
- Jennifer M Cocciardi
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, USA.
- Department of Biology, University of Mississippi, Oxford, MS, USA.
| | - Ava M Hoffman
- Department of Biostatistics, Fred Hutchinson Cancer Center, Seattle, WA, USA
| | | | - Jill Anderson
- Department of Genetics, University of Georgia, Athens, GA, USA
| | - Meghan Blumstein
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Emma L Boehm
- Department of Biology, Indiana University, Bloomington, IN, USA
| | - Lana G Bolin
- Department of Biology, Indiana University, Bloomington, IN, USA
| | | | - Gideon S Bradburd
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | - Haley A Branch
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada
| | - Lars A Brudvig
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Yanni Chen
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
| | - Scott L Collins
- Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - David L Des Marais
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Diana Gamba
- Department of Biology, Pennsylvania State University, University Park, PA, USA
| | - Niall P Hanan
- Department of Plant and Environmental Sciences, Jornada Basin LTER Program, New Mexico State University, Las Cruces, NM, USA
| | - Mia M Howard
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | - Joseph Jaros
- Department of Biological Sciences, Fordham University, New York, NY, USA
| | - Thomas E Juenger
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - Nicholas J Kooyers
- Department of Biology, University of Louisiana at Lafayette, Lafayette, LA, USA
| | - Ezra J Kottler
- Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO, USA
| | - Jennifer A Lau
- Department of Biology, Indiana University, Bloomington, IN, USA
| | - Mitra Menon
- Department of Evolution and Ecology, University of California, Davis, Davis, CA, USA
| | - David A Moeller
- Department of Plant and Microbial Biology, University of Minnesota, Minneapolis, MN, USA
| | | | - Seema N Sheth
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA
| | - Melinda Smith
- Department of Biology, Colorado State University, Fort Collins, CO, USA
| | - Katherine Toll
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
- Department of Biological Sciences, University of South Carolina, Columbia, SC, USA
| | - Mark C Ungerer
- Division of Biology, Kansas State University, Manhattan, KS, USA
| | - Megan L Vahsen
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA
| | | | - Amy Waananen
- Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USA
| | - Kenneth D Whitney
- Department of Biology, University of New Mexico, Albuquerque, NM, USA
| | - Meghan L Avolio
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, USA.
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13
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Łukasik P, Kolasa MR. With a little help from my friends: the roles of microbial symbionts in insect populations and communities. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230122. [PMID: 38705185 PMCID: PMC11070262 DOI: 10.1098/rstb.2023.0122] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Accepted: 12/14/2023] [Indexed: 05/07/2024] Open
Abstract
To understand insect abundance, distribution and dynamics, we need to understand the relevant drivers of their populations and communities. While microbial symbionts are known to strongly affect many aspects of insect biology, we lack data on their effects on populations or community processes, or on insects' evolutionary responses at different timescales. How these effects change as the anthropogenic effects on ecosystems intensify is an area of intense research. Recent developments in sequencing and bioinformatics permit cost-effective microbial diversity surveys, tracking symbiont transmission, and identification of functions across insect populations and multi-species communities. In this review, we explore how different functional categories of symbionts can influence insect life-history traits, how these effects could affect insect populations and their interactions with other species, and how they may affect processes and patterns at the level of entire communities. We argue that insect-associated microbes should be considered important drivers of insect response and adaptation to environmental challenges and opportunities. We also outline the emerging approaches for surveying and characterizing insect-associated microbiota at population and community scales. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.
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Affiliation(s)
- Piotr Łukasik
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Krakow, Poland
| | - Michał R. Kolasa
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Krakow, Poland
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14
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Leyden MR, Gowen B, Gonzalez-Romero R, Eirin-Lopez JM, Kim BH, Hayashi F, McCartney J, Zhang PC, Kubo-Irie M, Shabanowitz J, Hunt DF, Ferree P, Kasinsky H, Ausió J. Protamines and the sperm nuclear basic proteins Pandora's Box of insects. Biochem Cell Biol 2024; 102:238-251. [PMID: 38408323 DOI: 10.1139/bcb-2023-0363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024] Open
Abstract
Insects are the largest group of animals when it comes to the number and diversity of species. Yet, with the exception of Drosophila, no information is currently available on the primary structure of their sperm nuclear basic proteins (SNBPs). This paper represents the first attempt in this regard and provides information about six species of Neoptera: Poecillimon thessalicus, Graptosaltria nigrofuscata, Apis mellifera, Nasonia vitripennis, Parachauliodes continentalis, and Tribolium castaneum. The SNBPs of these species were characterized by acetic acid urea gel electrophoresis (AU-PAGE) and high-performance liquid chromatography fractionated. Protein sequencing was obtained using a combination of mass spectrometry sequencing, Edman N-terminal degradation sequencing and genome mining. While the SNBPs of several of these species exhibit a canonical arginine-rich protamine nature, a few of them exhibit a protamine-like composition. They appear to be the products of extensive cleavage processing from a precursor protein which are sometimes further processed by other post-translational modifications that are likely involved in the chromatin transitions observed during spermiogenesis in these organisms.
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Affiliation(s)
- Melissa R Leyden
- Department of Chemistry, University of Virginia, Charlottesville, VA 22904, USA
| | - Brent Gowen
- Department of Biology, University of Victoria, Victoria, BC V8W 2Y2, Canada
| | - Rodrigo Gonzalez-Romero
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 2Y2, Canada
| | - Jose Maria Eirin-Lopez
- Environmental Epigenetics Laboratory, Institute of Environment, Florida International University, Miami, FL, USA
- Florida International University, Miami, FL, USA
| | - Bo-Hyun Kim
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 2Y2, Canada
| | - Fumio Hayashi
- Department of Biology, Tokyo Metropolitan University, Minamiosawa 1-1, Hachioji, Tokyo 192-0397, Japan
| | - Jay McCartney
- Institute of Natural Sciences, Massey University, Palmerston North, Manawatu, New Zealand
| | - Patrick C Zhang
- W.M. Keck Science Department, Claremont McKenna, Pitzer, and Scripps Colleges, Claremont, CA 91711, USA
| | - Miyoko Kubo-Irie
- Biological Laboratory, The Open University of Japan, Wakaba, Mihama-ku, Chiba, 261-8506, Japan
| | - Jeffrey Shabanowitz
- Department of Chemistry, University of Virginia, Charlottesville, VA 22904, USA
| | - Donald F Hunt
- Department of Chemistry, University of Virginia, Charlottesville, VA 22904, USA
- Department of Pathology, University of Virginia, Charlottesville, VA 22903, USA
| | - Patrick Ferree
- W.M. Keck Science Department, Claremont McKenna, Pitzer, and Scripps Colleges, Claremont, CA 91711, USA
| | - Harold Kasinsky
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Juan Ausió
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 2Y2, Canada
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15
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Guan Y, Huang F, Ma C, Fan J, Hao G. Dissipation and residues of imidacloprid in amaranth under greenhouse and open field cultivations. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2024; 59:390-398. [PMID: 38794798 DOI: 10.1080/03601234.2024.2356991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Accepted: 05/14/2024] [Indexed: 05/26/2024]
Abstract
Despite the extensive exposure to imidacloprid residues in food plants, there has been little research on imidacloprid residues in amaranth. The dissipation trend and residue behavior of imidacloprid were evaluated to provide guidelines for imidacloprid application on amaranth under open field and greenhouse. The dissipation rate of imidacloprid in amaranth conformed to the first-order kinetic equation, and the half-lives of imidacloprid in amaranth ranged from 0.29 days in open field to 1.29 days in the greenhouse. After 7 and 14 days from the application of imidacloprid (pesticide dosage, 45 or 67.5 g a.i./ha), the amaranth under the open field and greenhouse growth could be consumed safely with average residues of 0.19 and 0.38 mg/kg, respectively. This result demonstrated that the cultivation has the dominant influence on imidacloprid residue, and the residue of imidacloprid in amaranth planting on open field was much lower than that in the greenhouse, indicating a significant difference in the pesticide residues between the two cultivations with a p-value less than 0.05.
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Affiliation(s)
- Yidong Guan
- Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control, School of Environmental Science and Engineering, Nanjing University of Information Science & Technology, Nanjing, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Feifei Huang
- College of Resource and Environment, Anhui Science and Technology University, Fengyang, China
| | - Chunwei Ma
- Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control, School of Environmental Science and Engineering, Nanjing University of Information Science & Technology, Nanjing, China
| | - Jianlin Fan
- Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control, School of Environmental Science and Engineering, Nanjing University of Information Science & Technology, Nanjing, China
| | - Guohui Hao
- Jiangsu Provincial Agro-product Supervision & Testing Center, Nanjing, China
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16
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Pontarp M, Runemark A, Friberg M, Opedal ØH, Persson AS, Wang L, Smith HG. Evolutionary plant-pollinator responses to anthropogenic land-use change: impacts on ecosystem services. Biol Rev Camb Philos Soc 2024; 99:372-389. [PMID: 37866400 DOI: 10.1111/brv.13026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 10/06/2023] [Accepted: 10/09/2023] [Indexed: 10/24/2023]
Abstract
Agricultural intensification at field and landscape scales, including increased use of agrochemicals and loss of semi-natural habitats, is a major driver of insect declines and other community changes. Efforts to understand and mitigate these effects have traditionally focused on ecological responses. At the same time, adaptations to pesticide use and habitat fragmentation in both insects and flowering plants show the potential for rapid evolution. Yet we lack an understanding of how such evolutionary responses may propagate within and between trophic levels with ensuing consequences for conservation of species and ecological functions in agroecosystems. Here, we review the literature on the consequences of agricultural intensification on plant and animal evolutionary responses and interactions. We present a novel conceptualization of evolutionary change induced by agricultural intensification at field and landscape scales and emphasize direct and indirect effects of rapid evolution on ecosystem services. We exemplify by focusing on economically and ecologically important interactions between plants and pollinators. We showcase available eco-evolutionary theory and plant-pollinator modelling that can improve predictions of how agricultural intensification affects interaction networks, and highlight available genetic and trait-focused methodological approaches. Specifically, we focus on how spatial genetic structure affects the probability of propagated responses, and how the structure of interaction networks modulates effects of evolutionary change in individual species. Thereby, we highlight how combined trait-based eco-evolutionary modelling, functionally explicit quantitative genetics, and genomic analyses may shed light on conditions where evolutionary responses impact important ecosystem services.
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Affiliation(s)
- Mikael Pontarp
- Department of Biology, Lund University, Sölvegatan 37, Lund, 22362, Sweden
| | - Anna Runemark
- Department of Biology, Lund University, Sölvegatan 37, Lund, 22362, Sweden
| | - Magne Friberg
- Department of Biology, Lund University, Sölvegatan 37, Lund, 22362, Sweden
| | - Øystein H Opedal
- Department of Biology, Lund University, Sölvegatan 37, Lund, 22362, Sweden
| | - Anna S Persson
- Centre for Environmental and Climate Science (CEC), Lund University, Sölvegatan 37, Lund, 22362, Sweden
| | - Lingzi Wang
- Centre for Environmental and Climate Science (CEC), Lund University, Sölvegatan 37, Lund, 22362, Sweden
- School of Mathematical Sciences, University of Southampton, 58 Salisbury Rd, Southampton, SO17 1BJ, UK
| | - Henrik G Smith
- Department of Biology, Lund University, Sölvegatan 37, Lund, 22362, Sweden
- Centre for Environmental and Climate Science (CEC), Lund University, Sölvegatan 37, Lund, 22362, Sweden
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17
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Ma LJ, Cao LJ, Chen JC, Tang MQ, Song W, Yang FY, Shen XJ, Ren YJ, Yang Q, Li H, Hoffmann AA, Wei SJ. Rapid and Repeated Climate Adaptation Involving Chromosome Inversions following Invasion of an Insect. Mol Biol Evol 2024; 41:msae044. [PMID: 38401527 PMCID: PMC10924284 DOI: 10.1093/molbev/msae044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 01/23/2024] [Accepted: 02/20/2024] [Indexed: 02/26/2024] Open
Abstract
Following invasion, insects can become adapted to conditions experienced in their invasive range, but there are few studies on the speed of adaptation and its genomic basis. Here, we examine a small insect pest, Thrips palmi, following its contemporary range expansion across a sharp climate gradient from the subtropics to temperate areas. We first found a geographically associated population genetic structure and inferred a stepping-stone dispersal pattern in this pest from the open fields of southern China to greenhouse environments of northern regions, with limited gene flow after colonization. In common garden experiments, both the field and greenhouse groups exhibited clinal patterns in thermal tolerance as measured by critical thermal maximum (CTmax) closely linked with latitude and temperature variables. A selection experiment reinforced the evolutionary potential of CTmax with an estimated h2 of 6.8% for the trait. We identified 3 inversions in the genome that were closely associated with CTmax, accounting for 49.9%, 19.6%, and 8.6% of the variance in CTmax among populations. Other genomic variations in CTmax outside the inversion region were specific to certain populations but functionally conserved. These findings highlight rapid adaptation to CTmax in both open field and greenhouse populations and reiterate the importance of inversions behaving as large-effect alleles in climate adaptation.
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Affiliation(s)
- Li-Jun Ma
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Li-Jun Cao
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Jin-Cui Chen
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Meng-Qing Tang
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Wei Song
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Fang-Yuan Yang
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Xiu-Jing Shen
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Ya-Jing Ren
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Qiong Yang
- Bio21 Institute, School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Hu Li
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Ary Anthony Hoffmann
- Bio21 Institute, School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Shu-Jun Wei
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
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18
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Waters JM, Ni S, McCulloch GA. Freshwater eDNA reveals dramatic biological shifts linked to deforestation of New Zealand. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168174. [PMID: 37924886 DOI: 10.1016/j.scitotenv.2023.168174] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 10/19/2023] [Accepted: 10/26/2023] [Indexed: 11/06/2023]
Abstract
Deforestation is considered a major threat to biodiversity across many parts of the globe, but the biological impacts of this dramatic ecosystem disturbance often remain incompletely understood. In New Zealand - the world's last major landmass to be colonised by humans - widespread deforestation over recent centuries has left a highly fragmented suite of relict forest stands, ideal for assessing anthropogenic biological change. We hypothesise that this widespread environmental disturbance has underpinned repeated and predictable ecological shifts across distinct rivers and regions. Here we use freshwater environmental DNA (eDNA) data (113 samples across 38 locations; 89 insect taxa) to test for concordant biological shifts linked to this deforestation. eDNA analyses highlight consistent compositional and functional differentiation between forested versus deforested assemblages, including turnover of 'cryptic' congeneric taxa that are morphologically similar yet ecologically and genetically distinct. These dramatic biological shifts are evident even over fine spatial scales within streams, emphasising the widespread emergence of a novel 'deforested' assemblage. Our results illustrate that environmental change can drive predictable biological shifts across broad geographic regions, and highlight the power of eDNA for assessing anthropogenic ecosystem change over large geographic scales.
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Affiliation(s)
- Jonathan M Waters
- Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
| | - Steven Ni
- Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand
| | - Graham A McCulloch
- Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand
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19
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Jourdan J, El Toum Abdel Fadil S, Oehlmann J, Hupało K. Rapid development of increased neonicotinoid tolerance in non-target freshwater amphipods. ENVIRONMENT INTERNATIONAL 2024; 183:108368. [PMID: 38070438 DOI: 10.1016/j.envint.2023.108368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 11/23/2023] [Accepted: 12/02/2023] [Indexed: 01/25/2024]
Abstract
The comprehensive assessment of the long-term impacts of constant exposure to pollutants on wildlife populations remains a relatively unexplored area of ecological risk assessment. Empirical evidence to suggest that multigenerational exposure affects the susceptibility of organisms is scarce, and the underlying mechanisms in the natural environment have yet to be fully understood. In this study, we first examined the arthropod candidate species, Gammarus roeselii that - unlike closely related species - commonly occurs in many contaminated river systems of Central Europe. This makes it a suitable study organism to investigate the development of tolerances and phenotypic adaptations along pollution gradients. In a 96-h acute toxicity assay with the neonicotinoid thiacloprid, we indeed observed a successive increase in tolerance in populations coming from contaminated regions. This was accompanied by a certain phenotypic change, with increased investment into reproduction. To address the question of whether these changes are plastic or emerged from longer lasting evolutionary processes, we conducted a multigeneration experiment in the second part of our study. Here, we used closely-related Hyalella azteca and pre-exposed them for multiple generations to sublethal concentrations of thiacloprid in a semi-static design (one week renewal of media containing 0.1 or 1.0 µg/L thiacloprid). The pre-exposed individuals were then used in acute toxicity assays to see how quickly such adaptive responses can develop. Over only two generations, the tolerance to the neonicotinoid almost doubled, suggesting developmental plasticity as a plausible mechanism for the rapid adaptive response to strong selection factors such as neonicotinoid insecticides. It remains to be discovered whether the plasticity of rapidly developed tolerance is species-specific and explains why closely related species - which may not have comparable adaptive response capabilities - disappear in polluted habitats. Overall, our findings highlight the neglected role of developmental plasticity during short- and long-term exposure of natural populations to pollution. Moreover, our results show that even pollutant levels seven times lower than concentrations found in the study region have a clear impact on the developmental trajectories of non-target species.
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Affiliation(s)
- Jonas Jourdan
- Department Aquatic Ecotoxicology, Institute for Ecology, Evolution and Diversity, Goethe University, Frankfurt am Main, Germany; Kompetenzzentrum Wasser Hessen, Max-von-Laue-Straße 13 D-60438, Frankfurt am Main, Germany.
| | - Safia El Toum Abdel Fadil
- Department Aquatic Ecotoxicology, Institute for Ecology, Evolution and Diversity, Goethe University, Frankfurt am Main, Germany; Faculty of Life Sciences, Hamburg University of Applied Sciences, Ulmenliet 20 D-21033, Hamburg, Germany
| | - Jörg Oehlmann
- Department Aquatic Ecotoxicology, Institute for Ecology, Evolution and Diversity, Goethe University, Frankfurt am Main, Germany; Kompetenzzentrum Wasser Hessen, Max-von-Laue-Straße 13 D-60438, Frankfurt am Main, Germany
| | - Kamil Hupało
- Department of Aquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany
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20
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Sieriebriennikov B, Porter ML, Mlejnek J, Short K, Lebhardt F, Holguera I, Desplan C, Perry MW. Whole genome sequence of a long-legged fly Condylostylus longicornis from Hawai'i. Front Genet 2023; 14:1325213. [PMID: 38146342 PMCID: PMC10749331 DOI: 10.3389/fgene.2023.1325213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 11/30/2023] [Indexed: 12/27/2023] Open
Affiliation(s)
- Bogdan Sieriebriennikov
- New York University, New York, NY, United States
- NYU Grossman School of Medicine, New York, NY, United States
| | | | - Jakub Mlejnek
- New York University, New York, NY, United States
- NYU Grossman School of Medicine, New York, NY, United States
| | - Keith Short
- Independent Researcher, Loves Park, IL, United States
| | | | | | | | - Michael W. Perry
- University of California San Diego, San Diego, CA, United States
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21
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Kozlov MV. Phenotypic Diversity of a Leafroller Archips podana (Lepidoptera, Tortricidae) Does Not Change along an Industrial Pollution Gradient. INSECTS 2023; 14:927. [PMID: 38132600 PMCID: PMC10743578 DOI: 10.3390/insects14120927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/03/2023] [Accepted: 12/04/2023] [Indexed: 12/23/2023]
Abstract
Morphological polymorphism offers rich opportunities for studying the eco-evolutionary mechanisms that drive the adaptations of local populations to heterogeneous and changing environments. In this study, I explore the association between pollution load, abundance of large fruit-tree tortrix Archips podana and its within-species diversity (expressed in the presence of apical and/or lateral prongs on the phallus in male genitalia) across 26 study sites located 0.5 to 31 km from the industrial city of Lipetsk in central Russia. The Shannon diversity index, calculated from the frequencies of four morphs, correlated neither with the distance to the nearest industrial polluter (a proxy of pollution load) nor with the number of moths captured by pheromone traps (a measure of population abundance). The statistical power of the correlation analysis was sufficient (67%) to detect a medium effect (i.e., Pearson correlation coefficient with an absolute value of 0.40), if it existed. I conclude that the four phenotypes of A. podana do not differ in tolerance to industrial pollution and similarly respond to pollution-induced environmental disturbance. This is the first study of industrial pollution impacts on within-species diversity of insects expressed in the discrete traits of their male genitalia.
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Affiliation(s)
- Mikhail V Kozlov
- Department of Biology, University of Turku, 20014 Turku, Finland
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22
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Mandal S, Oberst S, Biswas MHA, Islam MS. Dynamic analysis and control of a rice-pest system under transcritical bifurcations. PeerJ 2023; 11:e16083. [PMID: 37842048 PMCID: PMC10573297 DOI: 10.7717/peerj.16083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 08/21/2023] [Indexed: 10/17/2023] Open
Abstract
A decision model is developed by adopting two control techniques, combining cultural methods and pesticides in a hybrid approach. To control the adverse effects in the long term and to be able to evaluate the extensive use of pesticides on the environment and nearby ecosystems, the novel decision model assumes the use of pesticides only in an emergency situation. We, therefore, formulate a rice-pest-control model by rigorously modelling a rice-pest system and including the decision model and control techniques. The model is then extended to become an optimal control system with an objective function that minimizes the annual losses of rice by controlling insect pest infestations and simultaneously reduce the adverse impacts of pesticides on the environment and nearby ecosystems. This rice-pest-control model is verified by analysis, obtains the necessary conditions for optimality, and confirms our main results numerically. The rice-pest system is verified by stability analysis at equilibrium points and shows transcritical bifurcations indicative of acceptable thresholds for insect pests to demonstrate the pest control strategy.
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Affiliation(s)
- Sajib Mandal
- Centre for Audio, Acoustics and Vibration, University of Technology Sydney, Sydney, Australia
| | - Sebastian Oberst
- Centre for Audio, Acoustics and Vibration, University of Technology Sydney, Sydney, Australia
| | | | - Md. Sirajul Islam
- Department of Mathematics, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj, Bangladesh
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23
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Foster BJ, McCulloch GA, Foster Y, Kroos GC, King TM, Waters JM. ebony underpins Batesian mimicry in melanic stoneflies. Mol Ecol 2023; 32:4986-4998. [PMID: 37503654 DOI: 10.1111/mec.17085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/06/2023] [Accepted: 07/13/2023] [Indexed: 07/29/2023]
Abstract
The evolution of Batesian mimicry - whereby harmless species avoid predation through their resemblance to harmful species - has long intrigued biologists. In rare cases, Batesian mimicry is linked to intraspecific colour variation, in which only some individuals within a population resemble a noxious 'model'. Here, we assess intraspecific colour variation within a widespread New Zealand stonefly, wherein highly melanized individuals of Zelandoperla closely resemble a chemically defended aposematic stonefly, Austroperla cyrene. We assess convergence in the colour pattern of these two species, compare their relative palatability to predators, and use genome-wide association mapping to assess the genetic basis of this resemblance. Our analysis reveals that melanized Zelandoperla overlap significantly with Austroperla in colour space but are significantly more palatable to predators, implying that they are indeed Batesian mimics. Analysis of 194,773 genome-wide SNPs reveals an outlier locus (ebony) strongly differentiating melanic versus non-melanic Zelandoperla. Genotyping of 338 specimens from a single Zelandoperla population indicates that ebony explains nearly 70% of the observed variance in melanism. As ebony has a well-documented role in insect melanin biosynthesis, our findings indicate this locus has a conserved function across deeply divergent hexapod lineages. Distributional records suggest a link between the occurrence of melanic Zelandoperla and the forested ecosystems where the model Austroperla is abundant, suggesting the potential for adaptive shifts in this system underpinned by environmental change.
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Affiliation(s)
- Brodie J Foster
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | | | - Yasmin Foster
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Gracie C Kroos
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Tania M King
- Department of Zoology, University of Otago, Dunedin, New Zealand
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24
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Austin AT, Ballaré CL. Attackers gain the upper hand over plants in the face of rapid global change. Curr Biol 2023; 33:R611-R620. [PMID: 37279692 DOI: 10.1016/j.cub.2023.03.082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Interactions among organisms in natural ecosystems are the foundational underpinnings of nearly all ecological studies. It has never been more important to increase our awareness of how these interactions are altered by human activity, threatening biodiversity and disrupting ecosystem functioning. Much of the historic focus of species conservation has been the preservation of endangered and endemic species at risk from hunting, over-exploitation, and habitat destruction. However, there is increasing evidence that differences between plants and their attacking organisms in the speed and direction of physiological, demographic, and genetic (adaptation) responses to global change are having devastating consequences, resulting in large-scale losses of dominant or abundant plant species, particularly in forest ecosystems. From the elimination in the wild of the American chestnut to the extensive regional damage caused by insect outbreaks in temperate forest ecosystems, these losses of dominant species change the ecological landscape and functioning, and represent important threats to biodiversity at all scales. Introductions due to human activity, range shifts due to climate change, and their combination are the principal drivers behind these profound ecosystem changes. In this Review, we argue that there is an urgent need to increase our recognition and hone our predictive power for how these imbalances may occur. Moreover, we should seek to minimize the consequences of these imbalances in order to ensure the preservation of the structure, function and biodiversity of entire ecosystems, not just rare or highly endangered species.
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Affiliation(s)
- Amy T Austin
- IFEVA, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina.
| | - Carlos L Ballaré
- IFEVA, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Buenos Aires, Argentina; IIB-INTECH, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de San Martín, B1650HMP Buenos Aires, Argentina.
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25
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Reznik SY, Dolgovskaya MY, Karpun NN, Zakharchenko VY, Saulich AK, Musolin DL. The Invasive Caucasian Populations of the Brown Marmorated Stink Bug Halyomorpha halys (Hemiptera: Heteroptera: Pentatomidae) Rapidly Adapt Their Ecophysiological Traits to the Local Environmental Conditions. INSECTS 2023; 14:insects14050424. [PMID: 37233052 DOI: 10.3390/insects14050424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 04/27/2023] [Accepted: 04/27/2023] [Indexed: 05/27/2023]
Abstract
The ability to rapidly adapt to new environmental conditions is a crucial prerequisite for the wide-scale invasion of pests or intentional introduction of beneficial insects. A photoperiodically induced facultative winter diapause is an important adaptation ensuring synchronization of insect development and reproduction with the local seasonal dynamics of environmental factors. We conducted a laboratory study aimed to compare photoperiodic responses of two invasive Caucasian populations of the brown marmorated stink bug Halyomorpha halys (Hemiptera: Heteroptera: Pentatomidae), which recently invaded neighboring regions with subtropical (Sukhum, Abkhazia) and temperate (Abinsk, Russia) climates. Under the temperature of 25 °C and the near-critical photoperiods of L:D = 15:9 h and 15.5:8.5 h, the population from Abinsk showed a slower pre-adult development and a stronger tendency to enter winter adult (reproductive) diapause compared to the population from Sukhum. This finding agreed with the difference between the local dynamics of the autumnal temperature decrease. Similar adaptive interpopulation differences in the patterns of diapause-inducing responses are known in other insect species but our finding is distinguished by a very short adaptation time: H. halys was first recorded in Sukhum in 2015 and in Abinsk in 2018. Thus, the differences between the compared populations might have evolved over a relatively short span of several years.
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Affiliation(s)
- Sergey Ya Reznik
- Zoological Institute of the Russian Academy of Sciences, Universitetskaya Nab. 1, 199034 Saint Petersburg, Russia
| | - Margarita Yu Dolgovskaya
- Zoological Institute of the Russian Academy of Sciences, Universitetskaya Nab. 1, 199034 Saint Petersburg, Russia
| | - Natalia N Karpun
- Federal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, Yana Fabritsiusa Str. 2/28, 354002 Sochi, Russia
- Department of Forest Protection, Wood Science and Game Management, St. Petersburg State Forest Technical University, Institutskiy Per. 5, 194021 Saint Petersburg, Russia
| | - Vilena Ye Zakharchenko
- Federal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, Yana Fabritsiusa Str. 2/28, 354002 Sochi, Russia
| | - Aida Kh Saulich
- Department of Entomology, Saint Petersburg State University, Universitetskaya Nab. 7-9, 199034 Saint Petersburg, Russia
| | - Dmitrii L Musolin
- European and Mediterranean Plant Protection Organization, 21 Boulevard Richard Lenoir, 75011 Paris, France
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