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Buzan E, Potušek S, Urzi F, Pokorny B, Šprem N. Genetic characterisation of wild ungulates: successful isolation and analysis of DNA from widely available bones can be cheap, fast and easy. Zookeys 2020; 965:141-156. [PMID: 32973384 PMCID: PMC7483325 DOI: 10.3897/zookeys.965.54862] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 08/03/2020] [Indexed: 01/02/2023] Open
Abstract
Genetic characterisation of wild ungulates can be a useful tool in wildlife management and in obtaining a greater understanding of their biological and ecological roles in a wider spatiotemporal context. Different ways of optimising methodologies and reducing the costs of genetic analyses using widely available bone tissues collected within regular hunting allocations were examined. Successful isolation and analysis of DNA from widely available bones can be cheap, fast and easy. In particular, this study explored the possibility of using bones for extracting high quality nuclear DNA for microsatellite analysis. The utility of applying a modified demineralisation process using two commercially available DNA isolation kits, which differ significantly in price, was evaluated. The sample sets included bones and, for comparison, muscle tissues from four wild ungulate species: chamois (Rupicapra rupicapra), roe deer (Capreolus capreolus), wild boar (Sus scrofa), and Alpine ibex (Capra ibex). For the recent bones, these results confirmed that the DNA concentrations and microsatellite amplification were sufficiently high, even when using low-cost kits, after prior demineralisation. For old bones, prior demineralisation and use of a specially designed isolation kit led to a more successful extraction of DNA. Besides reducing kit-related costs, low-cost kits are much faster and therefore make genetic analysis more efficient.
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Affiliation(s)
- Elena Buzan
- University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagoljaška 8, 6000, Koper, SloveniaUniversity of PrimorskaKoperSlovenia
- Environmental Protection College, Trg mladosti 7, 3320, Velenje, SloveniaEnvironmental Protection CollegeVelenjeSlovenia
| | - Sandra Potušek
- University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagoljaška 8, 6000, Koper, SloveniaUniversity of PrimorskaKoperSlovenia
| | - Felicita Urzi
- University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagoljaška 8, 6000, Koper, SloveniaUniversity of PrimorskaKoperSlovenia
| | - Boštjan Pokorny
- Environmental Protection College, Trg mladosti 7, 3320, Velenje, SloveniaEnvironmental Protection CollegeVelenjeSlovenia
- Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, SloveniaUniversity of ZagrebZagrebSlovenia
| | - Nikica Šprem
- Department of Fisheries, Apiculture, Wildlife Management and Special Zoology, University of Zagreb, Faculty of Agriculture, Svetošimunska cesta 25, 10000, Zagreb, CroatiaUniversity of ZagrebZagrebCroatia
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Death C, Coulson G, Kierdorf U, Kierdorf H, Morris WK, Hufschmid J. Dental fluorosis and skeletal fluoride content as biomarkers of excess fluoride exposure in marsupials. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 533:528-541. [PMID: 26188404 DOI: 10.1016/j.scitotenv.2015.06.054] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2015] [Revised: 06/15/2015] [Accepted: 06/15/2015] [Indexed: 06/04/2023]
Abstract
Particulate and gaseous fluoride emissions contaminate vegetation near fluoride-emitting industries, potentially impacting herbivorous wildlife in neighboring areas. Dental fluorosis has been associated with consumption of fluoride-contaminated foliage by juvenile livestock and wildlife in Europe and North America. For the first time, we explored the epidemiology and comparative pathology of dental fluorosis in Australian marsupials residing near an aluminium smelter. Six species (Macropus giganteus, Macropus rufogriseus, Wallabia bicolor, Phascolarctos cinereus, Trichosurus vulpecula, Pseudocheirus peregrinus) demonstrated significantly higher bone fluoride levels in the high (n=161 individuals), compared to the low (n=67 individuals), fluoride areas (p<0.001). Necropsy examinations of all six species from the high-fluoride area near the smelter revealed dental lesions considered characteristic of dental fluorosis in eutherian mammals. Within the high-fluoride area, 67% of individuals across the six species showed dental enamel lesions, compared to 3% in the low-fluoride areas. Molars that erupted before weaning were significantly less likely to display pathological lesions than those developing later, and molars in the posterior portion of the dental arcade were more severely fluorotic than anterior molars in all six species. The severity of dental lesions was positively associated with increasing bone fluoride levels in all species, revealing a potential biomarker of excess fluoride exposure.
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Affiliation(s)
- Clare Death
- Faculty of Veterinary Science, The University of Melbourne, 250 Princess Hwy., Werribee, Victoria, 3030, Australia.
| | - Graeme Coulson
- School of BioSciences, The University of Melbourne, Royal Parade, Parkville, Victoria 3010, Australia
| | - Uwe Kierdorf
- Department of Biology, University of Hildesheim, Universitätsplatz 1, 31141 Hildesheim, Germany
| | - Horst Kierdorf
- Department of Biology, University of Hildesheim, Universitätsplatz 1, 31141 Hildesheim, Germany
| | - William K Morris
- The Quantitative & Applied Ecology Group, School of BioSciences, The University of Melbourne, 3010
| | - Jasmin Hufschmid
- Faculty of Veterinary Science, The University of Melbourne, 250 Princess Hwy., Werribee, Victoria, 3030, Australia
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Skeletal Pathology of Eastern Grey Kangaroos (Macropus giganteus) Exposed to High Environmental Fluoride Levels in South-Eastern Australia. J Comp Pathol 2015; 153:167-84. [DOI: 10.1016/j.jcpa.2015.06.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Revised: 06/05/2015] [Accepted: 06/15/2015] [Indexed: 11/21/2022]
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Kierdorf H, Hommelsheim S, Kierdorf U. Development of the Permanent Mandibular Cheek Teeth in Fallow Deer (Dama dama). Anat Histol Embryol 2012; 41:419-27. [DOI: 10.1111/j.1439-0264.2012.01151.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2011] [Accepted: 03/01/2012] [Indexed: 11/26/2022]
Affiliation(s)
- H. Kierdorf
- Address of authors: Department of Biology; University of Hildesheim; Marienburger Platz 22; 31141; Hildesheim; Germany
| | - S. Hommelsheim
- Address of authors: Department of Biology; University of Hildesheim; Marienburger Platz 22; 31141; Hildesheim; Germany
| | - U. Kierdorf
- Address of authors: Department of Biology; University of Hildesheim; Marienburger Platz 22; 31141; Hildesheim; Germany
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Kierdorf U, Bahelková P, Sedláček F, Kierdorf H. Pronounced reduction of fluoride exposure in free-ranging deer in North Bohemia (Czech Republic) as indicated by the biomarkers skeletal fluoride content and dental fluorosis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2012; 414:686-695. [PMID: 22137477 DOI: 10.1016/j.scitotenv.2011.10.041] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2011] [Revised: 10/20/2011] [Accepted: 10/20/2011] [Indexed: 05/28/2023]
Abstract
Wild deer have been recommended as bioindicators of fluoride pollution. We compared bone fluoride concentrations and prevalence and severity of dental fluorosis in free-ranging European roe deer (Capreolus capreolus) and red deer (Cervus elaphus) from five counties in the northwestern part of the Czech Republic that had been collected by hunters and whose mandibles were presented at trophy exhibitions in the years 1996/1997 ("early period") and 2009 ("late period"). Data on atmospheric fluoride deposition suggested that the deer from the early period had been exposed to markedly higher fluoride levels than those from the late period. We therefore predicted a decline in skeletal fluoride levels and prevalence of dental fluorosis for both species from the early to the late period. Fluoride concentrations were determined in the coronoid process of the mandible, and assessment of dental fluorosis was performed on the permanent cheek teeth. A pronounced drop in fluoride concentrations from the early period (roe deer (n = 157), median: 3147 mg F(-)/kg of dry bone; red deer (n = 127), median: 1263 mg F(-)/kg of dry bone) to the late period (roe deer (n = 117), median: 350 mg F(-)/kg of dry bone; red deer (n = 72), median: 288 mg F(-)/kg of dry bone) was recorded. Prevalence of dental fluorosis also markedly declined from the early to the late period (roe deer: from 93% to 12%, red deer: from 87% to 28%). The reduction of fluoride deposition in the study area and, in consequence, fluoride exposure of the resident deer populations, is attributed largely to the implementation of emission control devices in the brown coal-fired power plants located in North Bohemia from the mid 1990s onwards. The findings of the present study demonstrate that wild deer are well suited for monitoring temporal changes in fluoride pollution of their habitats.
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Affiliation(s)
- Uwe Kierdorf
- Department of Biology, University of Hildesheim, Marienburger Platz 22, 31141 Hildesheim, Germany.
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Richter H, Kierdorf U, Richards A, Melcher F, Kierdorf H. Fluoride concentration in dentine as a biomarker of fluoride intake in European roe deer (Capreolus capreolus) – An electron-microprobe study. Arch Oral Biol 2011; 56:785-92. [DOI: 10.1016/j.archoralbio.2011.01.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2010] [Revised: 01/05/2011] [Accepted: 01/11/2011] [Indexed: 10/18/2022]
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Dentin abnormalities in cheek teeth of wild red deer and roe deer from a fluoride-polluted area in Central Europe. Ann Anat 2010; 192:86-95. [DOI: 10.1016/j.aanat.2009.12.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2009] [Revised: 12/13/2009] [Accepted: 12/20/2009] [Indexed: 11/23/2022]
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Extreme premolar rotation in red deer (Cervus elaphus L.) and roe deer (Capreolus capreolus L.). EUR J WILDLIFE RES 2001. [DOI: 10.1007/bf02241554] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Kierdorf H, Kierdorf U, Richards A, Sedlacek F. Disturbed enamel formation in wild boars (Sus scrofa L.) from fluoride polluted areas in Central Europe. THE ANATOMICAL RECORD 2000; 259:12-24. [PMID: 10760739 DOI: 10.1002/(sici)1097-0185(20000501)259:1<12::aid-ar2>3.0.co;2-6] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The pathological alterations of enamel structure in the teeth of wild boars from fluoride polluted areas in N-Bohemia (Czech Republic) and S-Saxony (Germany) were studied on a macroscopic and a microscopic level. Mandibular bone fluoride concentration (mg F(-)/kg, dry wt; mean +/-SD, individuals <24 months of age) in the specimens from N-Bohemia (754.3+/-149.6) and S-Saxony (490.8+/-135.1) was significantly higher than that of controls (free of dental fluorosis), originating from the western part of Germany (304.7+/-91.0). Fluoride content in bulk enamel (mg F(-)/kg, ash wt) of fluorotic permanent teeth from N-Bohemia (382.1+/-165.2) and S-Saxony (125.0+/-38.3) was likewise significantly increased over that of non-fluorotic control teeth from W-Germany (33.6+/-26.7). Macroscopically, fluorosed wild boar enamel exhibited opacity and discoloration of varying extent, accentuated perikymata as well as hypoplastic and posteruptive surface defects. Microradiographic and scanning electron microscopic analyses revealed enamel subsurface hypomineralization, accentuated Retzius lines and occurrence of broad, hypomineralized incremental bands of abnormal structure underlying hypoplastic enamel surface defects. The presence of zones of aprismatic enamel was associated with these bands. Incremental bands with altered enamel structure and enamel surface hypoplasias, both denoting a severe disturbance during the secretory stage of amelogenesis, have previously been observed in rodents following acute parenteral fluoride dosing. It is concluded that in the chronically fluoride exposed wild boars periods of especially elevated plasma fluoride levels exerted an acute toxic effect on the secretory ameloblasts. A feature not previously reported from fluorosed enamel was the occurrence of canal-like structures that originated at the broad incremental bands and extended into the external enamel. The presence of these canals presumably results from a delay in the resumption of secretory activity by groups of ameloblasts following a fluoride insult. Based on experimental evidence in domestic pigs and in sheep, the overall subsurface hypomineralization of fluorosed wild boar enamel is attributed to a disturbance of enamel maturation. The distribution of fluorotic enamel changes within the dentition of the wild boars could be related to the developmental sequence of tooth formation in the species. Teeth whose crown formation took place prenatally (deciduous teeth) or largely pre-weaning (permanent first molars) exhibited no or only moderate fluorotic enamel alterations. Based on the extension of enamel surface hypoplasias along the coronoapical axes of the tooth crowns, the timing of excess fluoride exposure that caused a marked disruption of enamel matrix secretion was estimated in specimens with a known date of death. The results indicate that the wild boars had been exposed to a particularly severe fluoride impact during autumn and winter of their first year of life.
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Affiliation(s)
- H Kierdorf
- Zoological Institute, University of Cologne, 50923 Köln, Germany.
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