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Mao Q, Ma S, Schrickel PL, Zhao P, Wang J, Zhang Y, Li S, Wang C. Review detection of Newcastle disease virus. Front Vet Sci 2022; 9:936251. [PMID: 35982920 PMCID: PMC9378970 DOI: 10.3389/fvets.2022.936251] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 07/11/2022] [Indexed: 11/15/2022] Open
Abstract
Newcastle disease (ND) is an acute and highly contagious disease caused by the Newcastle disease virus (NDV) infecting poultry, which has caused great harm to the poultry industry around the world. Rapid diagnosis of NDV is important to early treatment and early institution of control measures. In this review, we comprehensively summarize the most recent research into NDV, including historical overview, molecular structure, and infection mechanism. We then focus on detection strategies for NDV, including virus isolation, serological assays (such as hemagglutination and hemagglutination-inhibition tests, enzyme linked immunosorbent assay, reporter virus neutralization test, Immunofluorescence assay, and Immune colloidal gold technique), molecular assays (such as reverse transcription polymerase chain reaction, real-time quantitative PCR, and loop-mediated isothermal amplification) and other assays. The performance of the different serological and molecular biology assays currently available was also analyzed. To conclude, we examine the limitations of currently available strategies for the detection of NDV to lay the groundwork for new detection assays.
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Affiliation(s)
- Qian Mao
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
| | - Shengming Ma
- Henan Joint International Research Laboratory of Veterinary Biologics Research and Application, Anyang Institute of Technology, Anyang, China
| | - Philip Luke Schrickel
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
| | - Pengwei Zhao
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
| | - Jingya Wang
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
| | - Yuhua Zhang
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
| | - Shuangyu Li
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
| | - Chengbao Wang
- College of Veterinary Medicine, Northwest Agriculture and Forestry University, Xianyang, China
- *Correspondence: Chengbao Wang
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2
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Jeon H, Jundi B, Choi K, Ryu H, Levy BD, Lim G, Han J. Fully-automated and field-deployable blood leukocyte separation platform using multi-dimensional double spiral (MDDS) inertial microfluidics. LAB ON A CHIP 2020; 20:3612-3624. [PMID: 32990714 DOI: 10.1039/d0lc00675k] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
A fully-automated and portable leukocyte separation platform was developed based on a new type of inertial microfluidic device, multi-dimensional double spiral (MDDS) device, as an alternative to centrifugation. By combining key innovations in inertial microfluidic device designs and check-valve-based recirculation processes, highly purified and concentrated WBCs (up to >99.99% RBC removal, ∼80% WBC recovery, >85% WBC purity, and ∼12-fold concentrated WBCs compared to the input sample) were achieved in less than 5 minutes, with high reliability and repeatability (coefficient of variation, CV < 5%). Using this, one can harvest up to 0.4 million of intact WBCs from 50 μL of human peripheral blood (50 μL), without any cell damage or phenotypic changes in a fully-automated operation. Alternatively, hand-powered operation is demonstrated with comparable separation efficiency and speed, which eliminates the need for electricity altogether for truly field-friendly sample preparation. The proposed platform is therefore highly deployable for various point-of-care applications, including bedside assessment of the host immune response and blood sample processing in resource-limited environments.
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Affiliation(s)
- Hyungkook Jeon
- Research Laboratory of Electronics, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA. and Department of Mechanical Engineering, Pohang University of Science and Technology (POSTECH), 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Bakr Jundi
- Division of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA
| | - Kyungyong Choi
- Research Laboratory of Electronics, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA. and Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA
| | - Hyunryul Ryu
- Research Laboratory of Electronics, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.
| | - Bruce D Levy
- Division of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA
| | - Geunbae Lim
- Department of Mechanical Engineering, Pohang University of Science and Technology (POSTECH), 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Jongyoon Han
- Research Laboratory of Electronics, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA. and Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA and Department of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA
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3
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Zhang M, Ye J, He JS, Zhang F, Ping J, Qian C, Wu J. Visual detection for nucleic acid-based techniques as potential on-site detection methods. A review. Anal Chim Acta 2019; 1099:1-15. [PMID: 31986265 DOI: 10.1016/j.aca.2019.11.056] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 11/21/2019] [Accepted: 11/22/2019] [Indexed: 12/15/2022]
Abstract
Nucleic acid-based techniques could achieve highly sensitive detection by amplifying template molecules to millions of folds. It has been one of the most valued analytical methods and is applied in many detection fields, such as diagnosis of infectious diseases, food safety assurance and so on. Nucleic acid-based techniques consist of three steps: nucleic acid extraction, amplification, and product detection. Among them, the detection step plays a vital role because it shows the results directly. As the trend of detection is simple, rapid and instrument-free, it is of necessity to carry out visual detection, where the result read-out could be visible and distinguished by the naked eye. In this critical review, advanced visual detection methods are summarized and discussed in detail, aiming to promote the potential application in on-site detection.
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Affiliation(s)
- Mengyao Zhang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Jing Ye
- Zhijiangnan Think Tank, Zhejiang Institute of Science and Technology Information, Hangzhou, 310006, China
| | - Jin-Song He
- College of Food Science and Technology, Yunnan Agricultural University, Kunming, 650201, China.
| | - Fang Zhang
- College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
| | - Jianfeng Ping
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Cheng Qian
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Jian Wu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China; Key Laboratory of on Site Processing Equipment for Agricultural Products, Ministry of Agriculture, Hangzhou, 310058, China.
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4
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Liu L, Atim S, LeBlanc N, Rauh R, Esau M, Chenais E, Mwebe R, Nelson WM, Masembe C, Nantima N, Ayebazibwe C, Ståhl K. Overcoming the challenges of pen-side molecular diagnosis of African swine fever to support outbreak investigations under field conditions. Transbound Emerg Dis 2018; 66:908-914. [PMID: 30554469 DOI: 10.1111/tbed.13103] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 12/03/2018] [Accepted: 12/06/2018] [Indexed: 11/30/2022]
Abstract
African swine fever (ASF) is a devastating disease of pigs. Without a vaccine, early detection and rapid diagnosis of ASF is a crucial step towards effective disease control. In many countries where ASF is endemic, laboratory infrastructure including sampling and sample shipment is inadequate, and a rapid laboratory confirmation would require that the diagnosis is performed at regional laboratories close to the pig farms of concern, or even at the farm-side. This study intended to evaluate measures including sample preparation methods, a dried-down assay, and a portable, battery-powered real-time PCR instrument, to improve molecular diagnosis under field conditions. A simple dilution of blood samples, either in Phosphate-buffered saline or a commercial buffer, worked similarly to beads-based nucleic acid extraction using a magnet as the core equipment; the latter method did work as well for those samples with low viral load or high Ct values. The real-time PCR assay using a Universal ProbeLibrary (UPL) probe tolerated suspected inhibitory substances present in the prepared samples better, whereas the dried-down assay had a higher diagnostic sensitivity. Additionally, an inhibition control assay proved to be helpful in avoiding false negative results when interpreting negative results of samples that might be of low quality or with inadequate reduction in inhibitory substances. When tested with synthetic DNA standards, the portable instrument performed at a level approaching stationary thermocyclers. In summary, the developments of suitable sample preparation methods, robust and thermal-stable real-time PCR assays with inhibition control, and battery-powered portable thermocyclers with middle-throughput offer one way forward to provide rapid, reliable molecular diagnosis under challenging field conditions.
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Affiliation(s)
- Lihong Liu
- National Veterinary Institute, Uppsala, Sweden
| | - Stella Atim
- National Animal Disease Diagnosis and Epidemiology Center, Entebbe, Uganda
| | - Neil LeBlanc
- Consultant molecular diagnostics, Uppsala, Sweden
| | | | - Martin Esau
- National Animal Disease Diagnosis and Epidemiology Center, Entebbe, Uganda
| | | | - Robert Mwebe
- National Animal Disease Diagnosis and Epidemiology Center, Entebbe, Uganda
| | | | | | - Noelina Nantima
- National Animal Disease Diagnosis and Epidemiology Center, Entebbe, Uganda
| | | | - Karl Ståhl
- National Veterinary Institute, Uppsala, Sweden
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5
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Tian B, Ma J, Zardán Gómez de la Torre T, Bálint Á, Donolato M, Hansen MF, Svedlindh P, Strömberg M. Rapid Newcastle Disease Virus Detection Based on Loop-Mediated Isothermal Amplification and Optomagnetic Readout. ACS Sens 2016. [DOI: 10.1021/acssensors.6b00379] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Bo Tian
- Department
of Engineering Sciences, Uppsala University, The Ångström Laboratory,
Box 534, SE-751 21 Uppsala, Sweden
| | - Jing Ma
- Department
of Immunology, Genetics and Pathology, Uppsala University, The Rudbeck Laboratory, SE-751 85 Uppsala, Sweden
| | | | - Ádám Bálint
- National
Food Chain Safety Office, Veterinary Diagnostic Directorate, Tábornok
u. 2., H-1143 Budapest, Hungary
| | - Marco Donolato
- BluSense Diagnostics, Fruebjergvej
3, 2100 Copenhagen, Denmark
| | - Mikkel Fougt Hansen
- Department
of Micro- and Nanotechnology, Technical University of Denmark, DTU Nanotech, Building 345 East, DK-2800 Kongens Lyngby, Denmark
| | - Peter Svedlindh
- Department
of Engineering Sciences, Uppsala University, The Ångström Laboratory,
Box 534, SE-751 21 Uppsala, Sweden
| | - Mattias Strömberg
- Department
of Engineering Sciences, Uppsala University, The Ångström Laboratory,
Box 534, SE-751 21 Uppsala, Sweden
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Ambagala A, Fisher M, Goolia M, Nfon C, Furukawa-Stoffer T, Ortega Polo R, Lung O. Field-Deployable Reverse Transcription-Insulated Isothermal PCR (RT-iiPCR) Assay for Rapid and Sensitive Detection of Foot-and-Mouth Disease Virus. Transbound Emerg Dis 2016; 64:1610-1623. [PMID: 27589902 PMCID: PMC7169878 DOI: 10.1111/tbed.12554] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Indexed: 12/23/2022]
Abstract
Foot‐and‐mouth disease (FMD) is a highly contagious viral disease of cloven‐hoofed animals, which can decimate the livestock industry and economy of countries previously free of this disease. Rapid detection of foot‐and‐mouth disease virus (FMDV) is critical to containing an FMD outbreak. Availability of a rapid, highly sensitive and specific, yet simple and field‐deployable assay would support local decision‐making during an FMDV outbreak. Here we report validation of a novel reverse transcription‐insulated isothermal PCR (RT‐iiPCR) assay that can be performed on a commercially available, compact and portable POCKIT™ analyser that automatically analyses data and displays ‘+’ or ‘−’ results. The FMDV RT‐iiPCR assay targets the 3D region of the FMDV genome and was capable of detecting 9 copies of in vitro‐transcribed RNA standard with 95% confidence. It accurately identified 63 FMDV strains belonging to all seven serotypes and showed no cross‐reactivity with viruses causing similar clinical diseases in cloven‐hoofed animals. The assay was able to identify FMDV RNA in multiple sample types including oral, nasal and lesion swabs, epithelial tissue suspensions, vesicular and oral fluid samples, even before the appearance of clinical signs. Clinical sensitivity of the assay was comparable or slightly higher than the laboratory‐based real‐time RT‐PCR assay in use. The assay was able to detect FMDV RNA in vesicular fluid samples without nucleic acid extraction. For RNA extraction from more complex sample types, a commercially available taco™ mini transportable magnetic bead‐based, automated extraction system was used. This assay provides a potentially useful field‐deployable diagnostic tool for rapid detection of FMDV in an outbreak in FMD‐free countries or for routine diagnostics in endemic countries with less structured laboratory systems.
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Affiliation(s)
- A Ambagala
- Canadian Food Inspection Agency, National Centres for Animal Disease, Lethbridge Laboratory, Lethbridge, AB, Canada
| | - M Fisher
- Canadian Food Inspection Agency, National Centres for Animal Disease, Lethbridge Laboratory, Lethbridge, AB, Canada
| | - M Goolia
- Canadian Food Inspection Agency, National Centre for Foreign Animal Diseases, Canadian Science Centre for Human and Animal Health, Winnipeg, MB, Canada
| | - C Nfon
- Canadian Food Inspection Agency, National Centre for Foreign Animal Diseases, Canadian Science Centre for Human and Animal Health, Winnipeg, MB, Canada
| | - T Furukawa-Stoffer
- Canadian Food Inspection Agency, National Centres for Animal Disease, Lethbridge Laboratory, Lethbridge, AB, Canada
| | - R Ortega Polo
- Canadian Food Inspection Agency, National Centres for Animal Disease, Lethbridge Laboratory, Lethbridge, AB, Canada
| | - O Lung
- Canadian Food Inspection Agency, National Centres for Animal Disease, Lethbridge Laboratory, Lethbridge, AB, Canada
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Liu L, Luo Y, Accensi F, Ganges L, Rodríguez F, Shan H, Ståhl K, Qiu HJ, Belák S. Pre-Clinical Evaluation of a Real-Time PCR Assay on a Portable Instrument as a Possible Field Diagnostic Tool: Experiences from the Testing of Clinical Samples for African and Classical Swine Fever Viruses. Transbound Emerg Dis 2016; 64:e31-e35. [PMID: 27311689 DOI: 10.1111/tbed.12538] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Indexed: 02/06/2023]
Abstract
African swine fever (ASF) and classical swine fever (CSF) are two highly infectious transboundary animal diseases (TADs) that are serious threats to the pig industry worldwide, including in China, the world's largest pork producer. In this study, a duplex real-time PCR assay was developed for the rapid detection and differentiation of African swine fever virus (ASFV) and classical swine fever virus (CSFV). The assay was performed on a portable, battery-powered PCR thermocycler with a low sample throughput (termed as 'T-COR4 assay'). The feasibility and reliability of the T-COR4 assay as a possible field method was investigated by testing clinical samples collected in China. When evaluated with reference materials or samples from experimental infections, the assay performed in a reliable manner, producing results comparable to those obtained from stationary PCR platforms. Of 59 clinical samples, 41 had results identical to a two-step CSFV real-time PCR assay. No ASFV was detected in these samples. The T-COR4 assay was technically easy to perform and produced results within 3 h, including sample preparation. In combination with a simple sample preparation method, the T-COR4 assay provides a new tool for the field diagnosis and differentiation of ASF and CSF, which could be of particular value in remote areas.
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Affiliation(s)
- L Liu
- National Veterinary Institute (SVA), Uppsala, Sweden.,The OIE Collaborating Centre for the Biotechnology-based Diagnosis of Infectious Diseases in Veterinary Medicine, Uppsala, Sweden.,Joint Laboratory for Veterinary Microbiology between SVA and HVRI, Uppsala, Sweden
| | - Y Luo
- Joint Laboratory for Veterinary Microbiology between SVA and HVRI, Uppsala, Sweden.,Division of High-consequence Swine Viral Diseases, Harbin Veterinary Research Institute (HVRI), Chinese Academy of Agricultural Sciences, Harbin, China
| | - F Accensi
- Centre de Recerca en Sanitat Animal (CReSA) - Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Barcelona, Spain.,Departament de Sanitat i Anatomia Animals, Facultat de Veterinària (UAB), Barcelona, Spain
| | - L Ganges
- Centre de Recerca en Sanitat Animal (CReSA) - Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Barcelona, Spain
| | - F Rodríguez
- Centre de Recerca en Sanitat Animal (CReSA) - Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Barcelona, Spain.,Departament de Sanitat i Anatomia Animals, Facultat de Veterinària (UAB), Barcelona, Spain
| | - H Shan
- Qingdao Agricultural University, Qingdao, China
| | - K Ståhl
- National Veterinary Institute (SVA), Uppsala, Sweden.,The OIE Collaborating Centre for the Biotechnology-based Diagnosis of Infectious Diseases in Veterinary Medicine, Uppsala, Sweden
| | - H-J Qiu
- Joint Laboratory for Veterinary Microbiology between SVA and HVRI, Uppsala, Sweden.,Division of High-consequence Swine Viral Diseases, Harbin Veterinary Research Institute (HVRI), Chinese Academy of Agricultural Sciences, Harbin, China
| | - S Belák
- National Veterinary Institute (SVA), Uppsala, Sweden.,The OIE Collaborating Centre for the Biotechnology-based Diagnosis of Infectious Diseases in Veterinary Medicine, Uppsala, Sweden.,Department of Biomedical Sciences and Veterinary Public Health (BVF), Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden
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