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Coradduzza E, Scarpa F, Rocchigiani AM, Cacciotto C, Lostia G, Fiori MS, Rodriguez Valera Y, De Pascali AM, Brandolini M, Azzena I, Locci C, Casu M, Bechere R, Pintus D, Ligios C, Scagliarini A, Sanna D, Puggioni G. The Global Evolutionary History of Orf Virus in Sheep and Goats Revealed by Whole Genomes Data. Viruses 2024; 16:158. [PMID: 38275968 PMCID: PMC10820850 DOI: 10.3390/v16010158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 01/16/2024] [Accepted: 01/19/2024] [Indexed: 01/27/2024] Open
Abstract
Orf virus (ORFV) belongs to the genus Parapoxvirus (Poxviridae family). It is the causative agent of contagious ecthyma (CE) that is an economically detrimental disease affecting small ruminants globally. Contagious ecthyma outbreaks are usually reported in intensive breeding of sheep and goats but they have also been reported in wildlife species. Notably, ORFV can infect humans, leading to a zoonotic disease. This study aims to elucidate the global evolutionary history of ORFV genomes in sheep and goats, including the first genomes from Central America in the analyses. In comparison to the last study on ORFV whole genomes, the database now includes 11 more sheep and goat genomes, representing an increase of 42%. The analysis of such a broader database made it possible to obtain a fine molecular dating of the coalescent time for ORFV S and G genomes, further highlighting the genetic structuring between sheep and goat genomes and corroborating their emergence in the latter half of 20th century.
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Affiliation(s)
- Elisabetta Coradduzza
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | - Fabio Scarpa
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.); (C.L.)
| | - Angela Maria Rocchigiani
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | - Carla Cacciotto
- Dipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy; (C.C.); (M.C.)
- Mediterranean Center for Disease Control, 07100 Sassari, Italy
| | - Giada Lostia
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | - Mariangela Stefania Fiori
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | | | - Alessandra Mistral De Pascali
- Dipartimento di Scienze Mediche e Chirurgiche, Università di Bologna, 40138 Bologna, Italy; (A.M.D.P.); (M.B.); (A.S.)
| | - Martina Brandolini
- Dipartimento di Scienze Mediche e Chirurgiche, Università di Bologna, 40138 Bologna, Italy; (A.M.D.P.); (M.B.); (A.S.)
| | - Ilenia Azzena
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.); (C.L.)
| | - Chiara Locci
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.); (C.L.)
- Dipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy; (C.C.); (M.C.)
| | - Marco Casu
- Dipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy; (C.C.); (M.C.)
| | - Roberto Bechere
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | - Davide Pintus
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | - Ciriaco Ligios
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
| | - Alessandra Scagliarini
- Dipartimento di Scienze Mediche e Chirurgiche, Università di Bologna, 40138 Bologna, Italy; (A.M.D.P.); (M.B.); (A.S.)
| | - Daria Sanna
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.); (C.L.)
| | - Giantonella Puggioni
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (G.L.); (M.S.F.); (R.B.); (D.P.); (C.L.); (G.P.)
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Coradduzza E, Sanna D, Scarpa F, Azzena I, Fiori MS, Scivoli R, Rocchigiani AM, Bechere R, Dettori MA, Pintus D, Evangelista E, Casu M, Ligios C, Puggioni G. A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ORF Virus through the Whole Genome Sequencing of the First Italian Strains. Viruses 2022; 14:v14071473. [PMID: 35891452 PMCID: PMC9318404 DOI: 10.3390/v14071473] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 06/21/2022] [Accepted: 06/28/2022] [Indexed: 02/01/2023] Open
Abstract
Orf virus (ORFV) is distributed worldwide and is the causative agent of contagious ecthyma that mainly occurs in sheep and goats. This disease was reported for the first time at the end of 18th century in Europe but very little is currently known about the temporal and geographic origins of this virus. In the present study, the use of new Italian whole genomes allowed for better inference on the evolutionary history of ORFV. In accordance with previous studies, two genome types (S and G) were described for infection of sheep and goats, respectively. These two well-differentiated groups of genomes originated for evolutive convergence in the late 1800s in two different areas of the world (Europe for S type and Asia for G type), but it was only in the early 1900s that the effective size of ORFV increased among hosts and the virus spread across the whole European continent. The Italian strains which were sequenced in the present study were isolated on the Mediterranean island of Sardinian and showed to be exclusive to this geographic area. One of them is likely representative of the early European forms of ORFV which infected sheep and became extinct about one century ago. Such an ancient Sardinian strain may have reached the island simple by chance, where it quickly adapted to the new habitat.
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Affiliation(s)
- Elisabetta Coradduzza
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Daria Sanna
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.)
- Correspondence:
| | - Fabio Scarpa
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.)
| | - Ilenia Azzena
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy; (F.S.); (I.A.)
- Dipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy;
| | - Mariangela S. Fiori
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Rosario Scivoli
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Angela M. Rocchigiani
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Roberto Bechere
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Maria A. Dettori
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Davide Pintus
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Eloisa Evangelista
- Ames Polydiagnostic Group Center SRL, Casalnuovo di Napoli, 80013 Naples, Italy;
| | - Marco Casu
- Dipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy;
| | - Ciriaco Ligios
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
| | - Giantonella Puggioni
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (M.S.F.); (R.S.); (A.M.R.); (R.B.); (M.A.D.); (D.P.); (C.L.); (G.P.)
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Coradduzza E, Sanna D, Rocchigiani AM, Pintus D, Scarpa F, Scivoli R, Bechere R, Dettori MA, Montesu MA, Marras V, Lobrano R, Ligios C, Puggioni G. Molecular Insights into the Genetic Variability of ORF Virus in a Mediterranean Region (Sardinia, Italy). Life (Basel) 2021; 11:416. [PMID: 34064326 PMCID: PMC8147818 DOI: 10.3390/life11050416] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 04/22/2021] [Accepted: 04/29/2021] [Indexed: 11/22/2022] Open
Abstract
Orf virus (ORFV) represents the causative agent of contagious ecthyma, clinically characterized by mild papular and pustular to severe proliferative lesions, mainly occurring in sheep and goats. In order to provide hints on the evolutionary history of this virus, we carried out a study aimed to assess the genetic variation of ORFV in Sardinia that hosts a large affected small ruminant population. We also found a high worldwide mutational viral evolutionary rate, which resulted, in turn, higher than the rate we detected for the strains isolated in Sardinia. In addition, a well-supported genetic divergence was found between the viral strains isolated from sheep and those from goats, but no relevant connection was evidenced between the severity of lesions produced by ORFV and specific polymorphic patterns in the two species of hosts. Such a finding suggests that ORFV infection-related lesions are not necessarily linked to the expression of one of the three genes here analyzed and could rather be the effect of the expression of other genes or rather represents a multifactorial character.
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Affiliation(s)
- Elisabetta Coradduzza
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Daria Sanna
- Dipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy
| | - Angela M. Rocchigiani
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Davide Pintus
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Fabio Scarpa
- Dipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy;
| | - Rosario Scivoli
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Roberto Bechere
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Maria A. Dettori
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Maria A. Montesu
- Dipartimento di Scienze Mediche, Chirurgiche e Sperimentali, Università di Sassari, 07100 Sassari, Italy; (M.A.M.); (V.M.); (R.L.)
| | - Vincenzo Marras
- Dipartimento di Scienze Mediche, Chirurgiche e Sperimentali, Università di Sassari, 07100 Sassari, Italy; (M.A.M.); (V.M.); (R.L.)
| | - Renato Lobrano
- Dipartimento di Scienze Mediche, Chirurgiche e Sperimentali, Università di Sassari, 07100 Sassari, Italy; (M.A.M.); (V.M.); (R.L.)
| | - Ciriaco Ligios
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
| | - Giantonella Puggioni
- Istituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy; (E.C.); (A.M.R.); (D.P.); (R.S.); (R.B.); (M.A.D.); (C.L.); (G.P.)
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Bala JA, Balakrishnan KN, Abdullah AA, Mohamed R, Haron AW, Jesse FFA, Noordin MM, Mohd-Azmi ML. The re-emerging of orf virus infection: A call for surveillance, vaccination and effective control measures. Microb Pathog 2018; 120:55-63. [PMID: 29709684 DOI: 10.1016/j.micpath.2018.04.057] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Revised: 04/26/2018] [Accepted: 04/26/2018] [Indexed: 01/01/2023]
Abstract
Orf disease is known to be enzootic among small ruminants in Asia, Africa, and some other parts of the world. The disease caused by orf virus is highly contagious among small ruminant species. Unfortunately, it has been neglected for decades because of the general belief that it only causes a self-limiting disease. On the other hand, in the past it has been reported to cause huge cumulative financial losses in livestock farming. Orf disease is characterized by localized proliferative and persistent skin nodule lesions that can be classified into three forms: generalized, labial and mammary or genitals. It can manifest as benign or malignant types. The later type of orf can remain persistent, often fatal and usually causes a serious outbreak among small ruminant population. Morbidity and mortality rates of orf are higher especially in newly infected kids and lambs. Application of antibiotics together with antipyretic and/or analgesic is highly recommended as a supportive disease management strategy for prevention of subsequent secondary microbial invasion. The presence of various exotic orf virus strains of different origin has been reported in many countries mostly due to poorly controlled cross-border virus transmission. There have been several efforts to develop orf virus vaccines and it was with variable success. The use of conventional vaccines to control orf is a debatable topic due to the concern of short term immunity development. Following re-infection in previously vaccinated animals, it is uncommon to observe the farms involved to experience rapid virus spread and disease outbreak. Meanwhile, cases of zoonosis from infected animals to animal handler are not uncommon. Despite failures to contain the spread of orf virus by the use of conventional vaccines, vaccination of animals with live orf virus is still considered as one of the best choice. The review herein described pertinent issues with regard to the development and use of potential effective vaccines as a control measure against orf virus infection.
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Affiliation(s)
- Jamilu Abubakar Bala
- Virology Unit, Department of Pathology and Microbiology, Faculty of Veterinary Medicine, University Putra Malaysia, Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia; Microbiology Unit, Department of Medical Laboratory Science, Faculty of Allied Health Sciences, Bayero University Kano, Nigeria, P.M.B. 3011, Kano, Nigeria
| | - Krishnan Nair Balakrishnan
- Virology Unit, Department of Pathology and Microbiology, Faculty of Veterinary Medicine, University Putra Malaysia, Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Ashwaq Ahmed Abdullah
- Institute of Bioscience, University Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia; Department of Microbiology, Faculty of Applied Science, Taiz University, Taiz, Yemen
| | - Ramlan Mohamed
- Institut Penyelidikan Haiwan, (IPH), Veterinary Research Institute, Ipoh, 59, Jalan Sultan Azlan Shah, 31400 Ipoh, Perak, Malaysia
| | - Abd Wahid Haron
- Department of Veterinary Clinical Studies, Faculty of Veterinary Medicine, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Faez Firdaus Abdullah Jesse
- Department of Veterinary Clinical Studies, Faculty of Veterinary Medicine, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Mustapha M Noordin
- Virology Unit, Department of Pathology and Microbiology, Faculty of Veterinary Medicine, University Putra Malaysia, Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia
| | - Mohd Lila Mohd-Azmi
- Virology Unit, Department of Pathology and Microbiology, Faculty of Veterinary Medicine, University Putra Malaysia, Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia.
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