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Radiya K, Joakimsen HL, Mikalsen KØ, Aahlin EK, Lindsetmo RO, Mortensen KE. Performance and clinical applicability of machine learning in liver computed tomography imaging: a systematic review. Eur Radiol 2023; 33:6689-6717. [PMID: 37171491 PMCID: PMC10511359 DOI: 10.1007/s00330-023-09609-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 02/02/2023] [Accepted: 02/06/2023] [Indexed: 05/13/2023]
Abstract
OBJECTIVES Machine learning (ML) for medical imaging is emerging for several organs and image modalities. Our objectives were to provide clinicians with an overview of this field by answering the following questions: (1) How is ML applied in liver computed tomography (CT) imaging? (2) How well do ML systems perform in liver CT imaging? (3) What are the clinical applications of ML in liver CT imaging? METHODS A systematic review was carried out according to the guidelines from the PRISMA-P statement. The search string focused on studies containing content relating to artificial intelligence, liver, and computed tomography. RESULTS One hundred ninety-one studies were included in the study. ML was applied to CT liver imaging by image analysis without clinicians' intervention in majority of studies while in newer studies the fusion of ML method with clinical intervention have been identified. Several were documented to perform very accurately on reliable but small data. Most models identified were deep learning-based, mainly using convolutional neural networks. Potentially many clinical applications of ML to CT liver imaging have been identified through our review including liver and its lesion segmentation and classification, segmentation of vascular structure inside the liver, fibrosis and cirrhosis staging, metastasis prediction, and evaluation of chemotherapy. CONCLUSION Several studies attempted to provide transparent result of the model. To make the model convenient for a clinical application, prospective clinical validation studies are in urgent call. Computer scientists and engineers should seek to cooperate with health professionals to ensure this. KEY POINTS • ML shows great potential for CT liver image tasks such as pixel-wise segmentation and classification of liver and liver lesions, fibrosis staging, metastasis prediction, and retrieval of relevant liver lesions from similar cases of other patients. • Despite presenting the result is not standardized, many studies have attempted to provide transparent results to interpret the machine learning method performance in the literature. • Prospective studies are in urgent call for clinical validation of ML method, preferably carried out by cooperation between clinicians and computer scientists.
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Affiliation(s)
- Keyur Radiya
- Department of Gastroenterological Surgery at University Hospital of North Norway (UNN), Tromso, Norway.
- Department of Clinical Medicine, UiT The Arctic University of Norway, Tromso, Norway.
| | - Henrik Lykke Joakimsen
- Institute of Clinical Medicine, UiT The Arctic University of Norway, Tromso, Norway
- Centre for Clinical Artificial Intelligence (SPKI), University Hospital of North Norway, Tromso, Norway
| | - Karl Øyvind Mikalsen
- Department of Clinical Medicine, UiT The Arctic University of Norway, Tromso, Norway
- Centre for Clinical Artificial Intelligence (SPKI), University Hospital of North Norway, Tromso, Norway
- UiT Machine Learning Group, Department of Physics and Technology, UiT the Arctic University of Norway, Tromso, Norway
| | - Eirik Kjus Aahlin
- Department of Gastroenterological Surgery at University Hospital of North Norway (UNN), Tromso, Norway
| | - Rolv-Ole Lindsetmo
- Department of Clinical Medicine, UiT The Arctic University of Norway, Tromso, Norway
- Head Clinic of Surgery, Oncology and Women Health, University Hospital of North Norway, Tromso, Norway
| | - Kim Erlend Mortensen
- Department of Gastroenterological Surgery at University Hospital of North Norway (UNN), Tromso, Norway
- Department of Clinical Medicine, UiT The Arctic University of Norway, Tromso, Norway
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Wu R, Xin Y, Qian J, Dong Y. A multi-scale interactive U-Net for pulmonary vessel segmentation method based on transfer learning. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Jin R, Wang M, Xu L, Lu J, Song E, Ma G. Automatic 3D CT liver segmentation based on fast global minimization of probabilistic active contour. Med Phys 2022; 50:2100-2120. [PMID: 36413182 DOI: 10.1002/mp.16116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 10/27/2022] [Accepted: 11/05/2022] [Indexed: 11/23/2022] Open
Abstract
PURPOSE Automatic liver segmentation from computed tomography (CT) images is an essential preprocessing step for computer-aided diagnosis of liver diseases. However, due to the large differences in liver shapes, low-contrast to adjacent tissues, and existence of tumors or other abnormalities, liver segmentation has been very challenging. This study presents an accurate and fast liver segmentation method based on a novel probabilistic active contour (PAC) model and its fast global minimization scheme (3D-FGMPAC), which is explainable as compared with deep learning methods. METHODS The proposed method first constructs a slice-indexed-histogram to localize the volume of interest (VOI) and estimate the probability that a voxel belongs to the liver according its intensity. The probabilistic image would be used to initialize the 3D PAC model. Secondly, a new contour indicator function, which is a component of the model, is produced by combining the gradient-based edge detection and Hessian-matrix-based surface detection. Then, a fast numerical scheme derived for the 3D PAC model is performed to evolve the initial probabilistic image into the global minimizer of the model, which is a smoothed probabilistic image showing a distinctly highlighted liver. Next, a simple region-growing strategy is applied to extract the whole liver mask from the smoothed probabilistic image. Finally, a B-spline surface is constructed to fit the patch of the rib cage to prevent possible leakage into adjacent intercostal tissues. RESULTS The proposed method is evaluated on two public datasets. The average Dice score, volume overlap error, volume difference, symmetric surface distance and volume processing time are 0.96, 7.35%, 0.02%, 1.17 mm and 19.8 s for the Sliver07 dataset, and 0.95, 8.89%, - 0.02 % $-0.02\%$ , 1.45 mm and 23.08 s for the 3Dircadb dataset, respectively. CONCLUSIONS The proposed fully-automatic approach can effectively segment the liver from low-contrast and complex backgrounds. The quantitative and qualitative results demonstrate that the proposed segmentation method outperforms state-of-the-art traditional automatic liver segmentation algorithms and achieves very competitive performance compared with recent deep leaning-based methods.
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Affiliation(s)
- Renchao Jin
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Manyang Wang
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Lijun Xu
- School of Computer and Information Engineering, Hubei University, Wuhan, China
| | - Jiayi Lu
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Enmin Song
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Guangzhi Ma
- School of Computer Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China
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He B, Yin D, Chen X, Luo H, Xiao D, He M, Wang G, Fang C, Liu L, Jia F. A study of generalization and compatibility performance of 3D U-Net segmentation on multiple heterogeneous liver CT datasets. BMC Med Imaging 2021; 21:178. [PMID: 34819022 PMCID: PMC8611902 DOI: 10.1186/s12880-021-00708-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 11/15/2021] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND Most existing algorithms have been focused on the segmentation from several public Liver CT datasets scanned regularly (no pneumoperitoneum and horizontal supine position). This study primarily segmented datasets with unconventional liver shapes and intensities deduced by contrast phases, irregular scanning conditions, different scanning objects of pigs and patients with large pathological tumors, which formed the multiple heterogeneity of datasets used in this study. METHODS The multiple heterogeneous datasets used in this paper includes: (1) One public contrast-enhanced CT dataset and one public non-contrast CT dataset; (2) A contrast-enhanced dataset that has abnormal liver shape with very long left liver lobes and large-sized liver tumors with abnormal presets deduced by microvascular invasion; (3) One artificial pneumoperitoneum dataset under the pneumoperitoneum and three scanning profiles (horizontal/left/right recumbent position); (4) Two porcine datasets of Bama type and domestic type that contains pneumoperitoneum cases but with large anatomy discrepancy with humans. The study aimed to investigate the segmentation performances of 3D U-Net in: (1) generalization ability between multiple heterogeneous datasets by cross-testing experiments; (2) the compatibility when hybrid training all datasets in different sampling and encoder layer sharing schema. We further investigated the compatibility of encoder level by setting separate level for each dataset (i.e., dataset-wise convolutions) while sharing the decoder. RESULTS Model trained on different datasets has different segmentation performance. The prediction accuracy between LiTS dataset and Zhujiang dataset was about 0.955 and 0.958 which shows their good generalization ability due to that they were all contrast-enhanced clinical patient datasets scanned regularly. For the datasets scanned under pneumoperitoneum, their corresponding datasets scanned without pneumoperitoneum showed good generalization ability. Dataset-wise convolution module in high-level can improve the dataset unbalance problem. The experimental results will facilitate researchers making solutions when segmenting those special datasets. CONCLUSIONS (1) Regularly scanned datasets is well generalized to irregularly ones. (2) The hybrid training is beneficial but the dataset imbalance problem always exits due to the multi-domain homogeneity. The higher levels encoded more domain specific information than lower levels and thus were less compatible in terms of our datasets.
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Affiliation(s)
- Baochun He
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
| | - Dalong Yin
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, Harbin Medical University, Harbin, China
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, University of Science and Technology of China, Hefei, China
| | - Xiaoxia Chen
- Department of Radiology, The Third Medical Center, General Hospital of PLA, Beijing, China
| | - Huoling Luo
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
| | - Deqiang Xiao
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
| | - Mu He
- First Hepatobiliary Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Guisheng Wang
- Department of Radiology, The Third Medical Center, General Hospital of PLA, Beijing, China
| | - Chihua Fang
- First Hepatobiliary Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Lianxin Liu
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, Harbin Medical University, Harbin, China.
- Department of Hepatobiliary Surgery, The First Affiliated Hospital, University of Science and Technology of China, Hefei, China.
| | - Fucang Jia
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China.
- Pazhou Lab, Guangzhou, China.
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Ye C, Zhang W, Pang Z, Wang W. Efficacy of liver cancer microwave ablation through ultrasonic image guidance under deep migration feature algorithm. Pak J Med Sci 2021; 37:1693-1698. [PMID: 34712308 PMCID: PMC8520357 DOI: 10.12669/pjms.37.6-wit.4885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 06/17/2021] [Accepted: 07/05/2021] [Indexed: 12/04/2022] Open
Abstract
Objective: To explore the therapeutic effects of ultrasound-guided microwave ablation and radio frequency ablation for liver cancer patients. Methods: Seventy-eight patients with microwave ablation were rolled into the experimental group and 56 patients with radio frequency ablation were in the control group. This study was conducted from March 1, 2019 to June 30, 2020 in our hospital. Based on Convolutional Neural Networks (CNN) and Migration feature (MF), a new ultrasound image diagnosis algorithm CNNMF was constructed, which was compared with AdaBoost and PCA-BP based on Principal component analysis (PCA) and back propagation (BP), and the accuracy (Acc), specificity (Spe), sensitivity (Sen), and F1 values of the three algorithms were calculated. Then, the CNNMF algorithm was applied to the ultrasonic image diagnosis of the two patients, and the postoperative ablation points, complications and ablation time were recorded. Results: The Acc (96.31%), Spe (89.07%), Sen (91.26%), and F1 value (0.79%) of the CNNMF algorithm were obviously larger than the AdaBoost and the PCA-BP algorithms (P< 0.05); in contrast with the control group. The number of ablation points in the experimental group was obviously larger, and the ablation time was obviously shorter (P<0.05); the experimental group had one case of liver abscess and two cases of wound pain after surgery, which were both obviously less than the control group (four cases; five cases) (P<0.05) Conclusion: In contrast with traditional algorithms, the CNNMF algorithm has better diagnostic performance for liver cancer ultrasound images. In contrast with radio frequency ablation, microwave ablation has better ablation effects for liver cancer tumors, and can reduce the incidence of postoperative complications in patients, which is safe and feasible.
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Affiliation(s)
- Changkong Ye
- Changkong Ye, Bachelor's Degrees. Department of Ultrasound, Beihai people's Hospital, Beihai 536000, China
| | - Wenyan Zhang
- Wenyan Zhang, Bachelor's Degrees. Department of Ultrasound, Beihai people's Hospital, Beihai 536000, China
| | - Zijuan Pang
- Zijuan Pang, Master of Medicine. Department of Oncology, Beihai people's Hospital, Beihai 536000, China
| | - Wei Wang
- Wei Wang, Bachelor's Degrees. Department of Oncology, Beihai people's Hospital, Beihai 536000, China
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Gao F, Qiao K, Hai J, Yan B, Wu M, Wang L, Chen J. Fully Convolutional DenseNet with Attention Mechanism for Liver Lesion Segmentation in MRI Images. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2021. [DOI: 10.1166/jmihi.2021.3617] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The goal of this research is to achieve accurate segmentation of liver tumors in noncontrast T2-weighted magnetic resonance imaging. As liver tumors and adjacent organs are represented by pixels of very similar gray intensity, segmentation is challenging, and the presence of different
sizes of liver tumor makes segmentation more difficult. Differing from previous work to capture contextual information using multiscale feature fusion with concatenation, attention mechanism is added to our segmentation model to extract precise global contextual information for pixel labeling
without requiring complex dilated convolution. This study describe a liver lesion segmentation model derived from FC-DenseNet with attention mechanism. Specifically, a global attention module (GAM) is added to up-sampling path, and high-level features are processed by the GAM to generating
weighting information for guiding high resolution detail features recovery. High-level features are very effective for accurate category classification, but relatively weak at pixel classification and predicting restoration of the original resolution, so the fusion of high-level semantic features
and low-level detail features can improve segmentation accuracy. A weighted focal loss function is used to solve the problem of lesion area occupying a relatively low proportion of the whole image, and to deal with the disequilibrium of foreground and background in the training liver lesion
images. Experimental results show our segmentation model can automatically segment liver tumors from complete MRI images, and the addition of the GAM model can effectively improve liver tumor segmentation. Our algorithms have obvious advantages over other CNN algorithms and traditional manual
methods of feature extraction.
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Affiliation(s)
- Fei Gao
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, 450001, China
| | - Kai Qiao
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, 450001, China
| | - Jinjin Hai
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, 450001, China
| | - Bin Yan
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, 450001, China
| | - Minghui Wu
- Department of Radiology, Henan Provincial People’s Hospital, Zhengzhou, 450003, China
| | - Linyuan Wang
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, 450001, China
| | - Jian Chen
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, 450001, China
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He M, Zhang P, Ma X, He B, Fang C, Jia F. Radiomic Feature-Based Predictive Model for Microvascular Invasion in Patients With Hepatocellular Carcinoma. Front Oncol 2020; 10:574228. [PMID: 33251138 PMCID: PMC7674833 DOI: 10.3389/fonc.2020.574228] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 10/14/2020] [Indexed: 12/12/2022] Open
Abstract
Objective This study aimed to build and evaluate a radiomics feature-based model for the preoperative prediction of microvascular invasion (MVI) in patients with hepatocellular carcinoma. Methods A total of 145 patients were retrospectively included in the study pool, and the patients were divided randomly into two independent cohorts with a ratio of 7:3 (training cohort: n = 101, validation cohort: n = 44). For a pilot study of this predictive model another 18 patients were recruited into this study. A total of 1,231 computed tomography (CT) image features of the liver parenchyma without tumors were extracted from portal-phase CT images. A least absolute shrinkage and selection operator (LASSO) logistic regression was applied to build a radiomics score (Rad-score) model. Afterwards, a nomogram, including Rad-score as well as other clinicopathological risk factors, was established with a multivariate logistic regression model. The discrimination efficacy, calibration efficacy, and clinical utility value of the nomogram were evaluated. Results The Rad-score scoring model could predict MVI with the area under the curve (AUC) of 0.637 (95% CI, 0.516–0.758) in the training cohort as well as of 0.583 (95% CI, 0.395–0.770) in the validation cohort; however, the aforementioned discriminative approach could not completely outperform those existing predictors (alpha fetoprotein, neutrophilic granulocyte, and preoperative hemoglobin). The individual predictive nomogram which included the Rad-score, alpha fetoprotein, neutrophilic granulocyte, and preoperative hemoglobin showed a better discrimination efficacy with AUC of 0.865 (95% CI, 0.786–0.944), which was higher than the conventional methods’ AUCs (nomogram vs Rad-score, alpha fetoprotein, neutrophilic granulocyte, and preoperative hemoglobin at P < 0.001, P = 0.025, P < 0.001, and P = 0.001, respectively). When applied to the validation cohort, the nomogram discrimination efficacy was still outbalanced those above mentioned three remaining methods (AUC: 0.705; 95% CI, 0.537–0.874). The calibration curves of this proposed method showed a satisfying consistency in both cohorts. A prospective pilot analysis showed that the nomogram could predict MVI with an AUC of 0.844 (95% CI, 0.628–1.000). Conclusions The radiomics feature-based predictive model improved the preoperative prediction of MVI in HCC patients significantly. It could be a potentially valuable clinical utility.
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Affiliation(s)
- Mu He
- The First Department of Hepatobiliary Surgery, Zhujiang Hospital, Southern Medical University, Guangdong Provincial Clinical and Engineering Center of Digital Medicine, Guangzhou, China
| | - Peng Zhang
- The First Department of Hepatobiliary Surgery, Zhujiang Hospital, Southern Medical University, Guangdong Provincial Clinical and Engineering Center of Digital Medicine, Guangzhou, China
| | - Xiao Ma
- Research Laboratory for Medical Imaging and Digital Surgery, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Baochun He
- Research Laboratory for Medical Imaging and Digital Surgery, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Chihua Fang
- The First Department of Hepatobiliary Surgery, Zhujiang Hospital, Southern Medical University, Guangdong Provincial Clinical and Engineering Center of Digital Medicine, Guangzhou, China
| | - Fucang Jia
- Research Laboratory for Medical Imaging and Digital Surgery, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
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Application of KPCA and AdaBoost algorithm in classification of functional magnetic resonance imaging of Alzheimer’s disease. Neural Comput Appl 2020. [DOI: 10.1007/s00521-020-04707-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Tang W, Zou D, Yang S, Shi J, Dan J, Song G. A two-stage approach for automatic liver segmentation with Faster R-CNN and DeepLab. Neural Comput Appl 2020. [DOI: 10.1007/s00521-019-04700-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Lebre MA, Vacavant A, Grand-Brochier M, Rositi H, Strand R, Rosier H, Abergel A, Chabrot P, Magnin B. A robust multi-variability model based liver segmentation algorithm for CT-scan and MRI modalities. Comput Med Imaging Graph 2019; 76:101635. [PMID: 31301489 DOI: 10.1016/j.compmedimag.2019.05.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 04/08/2019] [Accepted: 05/13/2019] [Indexed: 10/26/2022]
Abstract
Developing methods to segment the liver in medical images, study and analyze it remains a significant challenge. The shape of the liver can vary considerably from one patient to another, and adjacent organs are visualized in medical images with similar intensities, making the boundaries of the liver ambiguous. Consequently, automatic or semi-automatic segmentation of liver is a difficult task. Moreover, scanning systems and magnetic resonance imaging have different settings and parameters. Thus the images obtained differ from one machine to another. In this article, we propose an automatic model-based segmentation that allows building a faithful 3-D representation of the liver, with a mean Dice value equal to 90.3% on CT and MRI datasets. We compare our algorithm with a semi-automatic method and with other approaches according to the state of the art. Our method works with different data sources, we use a large quantity of CT and MRI images from machines in various hospitals and multiple DICOM images available from public challenges. Finally, for evaluation of liver segmentation approaches in state of the art, robustness is not adequacy addressed with a precise definition. Another originality of this article is the introduction of a novel measure of robustness, which takes into account the liver variability at different scales.
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Affiliation(s)
- Marie-Ange Lebre
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France.
| | - Antoine Vacavant
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - Manuel Grand-Brochier
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - Hugo Rositi
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - Robin Strand
- Centre for Image Analysis, Uppsala University, Sweden
| | - Hubert Rosier
- Centre Hospitalier Émile Roux, Le Puy-en-Velay, France
| | - Armand Abergel
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - Pascal Chabrot
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
| | - Benoît Magnin
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000 Clermont-Ferrand, France
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Chlebus G, Meine H, Thoduka S, Abolmaali N, van Ginneken B, Hahn HK, Schenk A. Reducing inter-observer variability and interaction time of MR liver volumetry by combining automatic CNN-based liver segmentation and manual corrections. PLoS One 2019; 14:e0217228. [PMID: 31107915 PMCID: PMC6527212 DOI: 10.1371/journal.pone.0217228] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Accepted: 05/07/2019] [Indexed: 12/13/2022] Open
Abstract
Purpose To compare manual corrections of liver masks produced by a fully automatic segmentation method based on convolutional neural networks (CNN) with manual routine segmentations in MR images in terms of inter-observer variability and interaction time. Methods For testing, patient’s precise reference segmentations that fulfill the quality requirements for liver surgery were manually created. One radiologist and two radiology residents were asked to provide manual routine segmentations. We used our automatic segmentation method Liver-Net to produce liver masks for the test cases and asked a radiologist assistant and one further resident to correct the automatic results. All observers were asked to measure their interaction time. Both manual routine and corrected segmentations were compared with the reference annotations. Results The manual routine segmentations achieved a mean Dice index of 0.95 and a mean relative error (RVE) of 4.7%. The quality of liver masks produced by the Liver-Net was on average 0.95 Dice and 4.5% RVE. Liver masks resulting from manual corrections of automatically generated segmentations compared to routine results led to a significantly lower inter-observer variability (mean per case absolute RVE difference across observers 0.69%) when compared to manual routine ones (2.75%). The mean interaction time was 2 min for manual corrections and 10 min for manual routine segmentations. Conclusions The quality of automatic liver segmentations is on par with those from manual routines. Using automatic liver masks in the clinical workflow could lead to a reduction of segmentation time and a more consistent liver volume estimation across different observers.
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Affiliation(s)
- Grzegorz Chlebus
- Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany
- Diagnostic Image Analysis Group, Department of Radiology and Nuclear Medicine, Radboud University Medical Center, Nijmegen, The Netherlands
- * E-mail:
| | - Hans Meine
- Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany
- University of Bremen, Medical Image Computing Group, Bremen, Germany
| | - Smita Thoduka
- Department of Radiology, Städtisches Klinikum Dresden, Dresden, Germany
| | | | - Bram van Ginneken
- Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany
- Diagnostic Image Analysis Group, Department of Radiology and Nuclear Medicine, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Horst Karl Hahn
- Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany
- Jacobs University, Bremen, Germany
| | - Andrea Schenk
- Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany
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Lebre MA, Vacavant A, Grand-Brochier M, Rositi H, Abergel A, Chabrot P, Magnin B. Automatic segmentation methods for liver and hepatic vessels from CT and MRI volumes, applied to the Couinaud scheme. Comput Biol Med 2019; 110:42-51. [PMID: 31121506 DOI: 10.1016/j.compbiomed.2019.04.014] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 04/18/2019] [Accepted: 04/18/2019] [Indexed: 02/07/2023]
Abstract
BACKGROUND Proper segmentation of the liver from medical images is critical for computer-assisted diagnosis, therapy and surgical planning. Knowledge of its vascular structure allows division of the liver into eight functionally independent segments, each with its own vascular inflow, known as the Couinaud scheme. Couinaud's description is the most widely used classification, since it is well-suited for surgery and accurate for the localization of lesions. However, automatic segmentation of the liver and its vascular structure to construct the Couinaud scheme remains a challenging task. METHODS We present a complete framework to obtain Couinaud's classification in three main steps; first, we propose a model-based liver segmentation, then a vascular segmentation based on a skeleton process, and finally, the construction of the eight independent liver segments. Our algorithms are automatic and allow 3D visualizations. RESULTS We validate these algorithms on various databases with different imaging modalities (Magnetic Resonance Imaging (MRI) and Computed Tomography (CT)). Experimental results are presented on diseased livers, which pose complex challenges because both the overall organ shape and the vessels can be severely deformed. A mean DICE score of 0.915 is obtained for the liver segmentation, and an average accuracy of 0.98 for the vascular network. Finally, we present an evaluation of our method for performing the Couinaud segmentation thanks to medical reports with promising results. CONCLUSIONS We were able to automatically reconstruct 3-D volumes of the liver and its vessels on MRI and CT scans. Our goal is to develop an improved method to help radiologists with tumor localization.
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Affiliation(s)
- Marie-Ange Lebre
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France.
| | - Antoine Vacavant
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France
| | - Manuel Grand-Brochier
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France
| | - Hugo Rositi
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France
| | - Armand Abergel
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France
| | - Pascal Chabrot
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France
| | - Benoît Magnin
- Université Clermont Auvergne, CHU Clermont-Ferrand, CNRS, SIGMA Clermont, Institut Pascal, F-63000, Clermont-Ferrand, France
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Zhang J, Markova S, Garcia A, Huang K, Nie X, Choi W, Lu W, Wu A, Rimner A, Li G. Evaluation of automatic contour propagation in T2-weighted 4DMRI for normal-tissue motion assessment using internal organ-at-risk volume (IRV). J Appl Clin Med Phys 2018; 19:598-608. [PMID: 30112797 PMCID: PMC6123161 DOI: 10.1002/acm2.12431] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Revised: 05/19/2018] [Accepted: 07/01/2018] [Indexed: 12/25/2022] Open
Abstract
Purpose The purpose of this study was to evaluate the quality of automatically propagated contours of organs at risk (OARs) based on respiratory‐correlated navigator‐triggered four‐dimensional magnetic resonance imaging (RC‐4DMRI) for calculation of internal organ‐at‐risk volume (IRV) to account for intra‐fractional OAR motion. Methods and Materials T2‐weighted RC‐4DMRI images were of 10 volunteers acquired and reconstructed using an internal navigator‐echo surrogate and concurrent external bellows under an IRB‐approved protocol. Four major OARs (lungs, heart, liver, and stomach) were delineated in the 10‐phase 4DMRI. Two manual‐contour sets were delineated by two clinical personnel and two automatic‐contour sets were propagated using free‐form deformable image registration. The OAR volume variation within the 10‐phase cycle was assessed and the IRV was calculated as the union of all OAR contours. The OAR contour similarity between the navigator‐triggered and bellows‐rebinned 4DMRI was compared. A total of 2400 contours were compared to the most probable ground truth with a 95% confidence level (S95) in similarity, sensitivity, and specificity using the simultaneous truth and performance level estimation (STAPLE) algorithm. Results Visual inspection of automatically propagated contours finds that approximately 5–10% require manual correction. The similarity, sensitivity, and specificity between manual and automatic contours are indistinguishable (P > 0.05). The Jaccard similarity indexes are 0.92 ± 0.02 (lungs), 0.89 ± 0.03 (heart), 0.92 ± 0.02 (liver), and 0.83 ± 0.04 (stomach). Volume variations within the breathing cycle are small for the heart (2.6 ± 1.5%), liver (1.2 ± 0.6%), and stomach (2.6 ± 0.8%), whereas the IRV is much larger than the OAR volume by: 20.3 ± 8.6% (heart), 24.0 ± 8.6% (liver), and 47.6 ± 20.2% (stomach). The Jaccard index is higher in navigator‐triggered than bellows‐rebinned 4DMRI by 4% (P < 0.05), due to the higher image quality of navigator‐based 4DMRI. Conclusion Automatic and manual OAR contours from Navigator‐triggered 4DMRI are not statistically distinguishable. The navigator‐triggered 4DMRI image provides higher contour quality than bellows‐rebinned 4DMRI. The IRVs are 20–50% larger than OAR volumes and should be considered in dose estimation.
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Affiliation(s)
- Jingjing Zhang
- Department of Radiation Oncology, Zhongshan Hospital of Sun Yat-Sen University, Zhongshan, China.,Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Svetlana Markova
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Alejandro Garcia
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Kirk Huang
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Xingyu Nie
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Wookjin Choi
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Wei Lu
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Abraham Wu
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Andreas Rimner
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Guang Li
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York
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张 普, 王 立, 罗 云, 史 福, 何 琳, 曾 成, 张 宇, 方 驰. [Application of 3D visualization technique in breast cancer surgery with immediate breast reconstruction using laparoscopically harvested pedicled latissimus dorsi muscle flap]. NAN FANG YI KE DA XUE XUE BAO = JOURNAL OF SOUTHERN MEDICAL UNIVERSITY 2017; 37:1131-1135. [PMID: 28801298 PMCID: PMC6765736 DOI: 10.3969/j.issn.1673-4254.2017.08.22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Indexed: 06/07/2023]
Abstract
OBJECTIVE To study the value of 3D visualization technique in breast-preserving surgery for breast cancer with immediate breast reconstruction using laparoscopically harvested pedicled latissimus dorsi muscle flap. METHODS From January, 2015 to May, 2016, 30 patients with breast cancer underwent breast-preserving surgery with immediate breast reconstruction using pedicled latissimus dorsi muscle flap. The CT data of the arterial phase and venous phase were collected preoperatively and imported into the self-developed medical image 3D visualization system for image segmentation and 3D reconstruction. The 3D models were imported into the simulation surgery platform for virtual surgery to prepare for subsequent surgeries. The cosmetic outcomes of the patients were evaluated 6 months after the surgery. Another 18 patients with breast cancer who underwent laparoscopic latissimus dorsi muscle breast reconstruction without using 3D visualization technique from January to December, 2014 served as the control group. The data of the operative time, intraoperative blood loss and postoperative appearance of the breasts were analyzed. RESULTS The reconstructed 3D model clearly displayed the anatomical structures of the breast, armpit, latissimus dorsi muscle and vessels and their anatomical relationship in all the 30 cases. Immediate breast reconstruction was performed successfully in all the cases with median operation time of 226 min (range, 210 to 420 min), a median blood loss of 95 mL (range, 73 to 132 mL). Evaluation of the appearance of the breast showed excellent results in 22 cases, good appearance in 6 cases and acceptable appearance in 2 cases. In the control group, the median operation time was 283 min (range, 256 to 313 min) and the median blood loss was 107 mL (range, 79 to 147 mL) with excellent appearance of the breasts in 10 cases, good appearance in 4 cases and acceptable appearance in 4 cases. CONCLUSION 3D reconstruction technique can clearly display the morphology of the latissimus dorsi and the thoracic dorsal artery, allows calculation of the volume of the breast and the latissimus dorsi, and helps in defining the scope of resection of the latissimus dorsi to avoid injuries of the pedicled vessels. This technique also helps to shorten the operation time, reduce intraoperative bleeding, and improve the appearance of the reconstructed breast using pedicled latissimus dorsi muscle flap.
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Affiliation(s)
- 普生 张
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 立坤 王
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 云峰 罗
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 福军 史
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 琳赟 何
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 成炳 曾
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 宇 张
- 南方医科大学珠江医院, 乳腺专科, 广东 广州 510282Department of Breast Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
| | - 驰华 方
- 南方医科大学珠江医院, 肝胆一科, 广东 广州 510282First Department of Hepatobiliary Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China
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Zou Z, Liao SH, Luo SD, Liu Q, Liu SJ. Semi-automatic segmentation of femur based on harmonic barrier. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2017; 143:171-184. [PMID: 28391815 DOI: 10.1016/j.cmpb.2017.03.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2016] [Revised: 02/19/2017] [Accepted: 03/01/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND AND OBJECTIVE Segmentation of the femur from the hip joint in computed tomography (CT) is an important preliminary step in hip surgery planning and simulation. However, this is a time-consuming and challenging task due to the weak boundary, the varying topology of the hip joint, and the extremely narrow or blurred space between the femoral head and the acetabulum. To address these problems, this study proposed a semi-automatic segmentation framework based on harmonic fields for accurate segmentation. METHODS The proposed method comprises three steps. First, with high-level information provided by the user, shape information provided by neighboring slices as well as the statistical information in the mask, a region selection method is proposed to effectively locate joint space for the harmonic field. Second, incorporated with an improved gradient, the harmonic field is used to adaptively extract a curve as the barrier that separates the femoral head from the acetabulum accurately. Third, a divide and conquer segmentation strategy based on the harmonic barrier is used to combine the femoral head part and body part as the final segmentation result. RESULTS We have tested 40 hips with considerately narrow or disappeared joint spaces. The experimental results are evaluated based on Jaccard, Dice, directional cut discrepancy (DCD) and receiver operating characteristic (ROC), and we achieve the higher Jaccard of 84.02%, Dice of 85.96%, area under curve (AUC) of 89.3%, and the lower error with DCD of 0.52mm. The effective ratio of our method is 79.1% even for cases with severe malformation. The results show that our method performs best in terms of effectiveness and accuracy on the whole data set. CONCLUSIONS The proposed method is efficient to segment femurs with narrow joint space. The accurate segmentation results can assist the physicians for osteoarthritis diagnosis in future.
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Affiliation(s)
- Zheng Zou
- School of Information Science and Engineering, Central South University, Changsha, Hunan, China.
| | - Sheng-Hui Liao
- School of Information Science and Engineering, Central South University, Changsha, Hunan, China.
| | - San-Ding Luo
- School of Information Science and Engineering, Central South University, Changsha, Hunan, China.
| | - Qing Liu
- School of Information Science and Engineering, Central South University, Changsha, Hunan, China.
| | - Shi-Jian Liu
- School of Information Science and Engineering, Fujian University of Technology, Fuzhou, Fujian, China.
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Esfandiarkhani M, Foruzan AH. A generalized active shape model for segmentation of liver in low-contrast CT volumes. Comput Biol Med 2017; 82:59-70. [DOI: 10.1016/j.compbiomed.2017.01.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Revised: 12/24/2016] [Accepted: 01/17/2017] [Indexed: 10/20/2022]
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17
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He B, Huang C, Sharp G, Zhou S, Hu Q, Fang C, Fan Y, Jia F. Fast automatic 3D liver segmentation based on a three-level AdaBoost-guided active shape model. Med Phys 2017; 43:2421. [PMID: 27147353 DOI: 10.1118/1.4946817] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE A robust, automatic, and rapid method for liver delineation is urgently needed for the diagnosis and treatment of liver disorders. Until now, the high variability in liver shape, local image artifacts, and the presence of tumors have complicated the development of automatic 3D liver segmentation. In this study, an automatic three-level AdaBoost-guided active shape model (ASM) is proposed for the segmentation of the liver based on enhanced computed tomography images in a robust and fast manner, with an emphasis on the detection of tumors. METHODS The AdaBoost voxel classifier and AdaBoost profile classifier were used to automatically guide three-level active shape modeling. In the first level of model initialization, fast automatic liver segmentation by an AdaBoost voxel classifier method is proposed. A shape model is then initialized by registration with the resulting rough segmentation. In the second level of active shape model fitting, a prior model based on the two-class AdaBoost profile classifier is proposed to identify the optimal surface. In the third level, a deformable simplex mesh with profile probability and curvature constraint as the external force is used to refine the shape fitting result. In total, three registration methods-3D similarity registration, probability atlas B-spline, and their proposed deformable closest point registration-are used to establish shape correspondence. RESULTS The proposed method was evaluated using three public challenge datasets: 3Dircadb1, SLIVER07, and Visceral Anatomy3. The results showed that our approach performs with promising efficiency, with an average of 35 s, and accuracy, with an average Dice similarity coefficient (DSC) of 0.94 ± 0.02, 0.96 ± 0.01, and 0.94 ± 0.02 for the 3Dircadb1, SLIVER07, and Anatomy3 training datasets, respectively. The DSC of the SLIVER07 testing and Anatomy3 unseen testing datasets were 0.964 and 0.933, respectively. CONCLUSIONS The proposed automatic approach achieves robust, accurate, and fast liver segmentation for 3D CTce datasets. The AdaBoost voxel classifier can detect liver area quickly without errors and provides sufficient liver shape information for model initialization. The AdaBoost profile classifier achieves sufficient accuracy and greatly decreases segmentation time. These results show that the proposed segmentation method achieves a level of accuracy comparable to that of state-of-the-art automatic methods based on ASM.
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Affiliation(s)
- Baochun He
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Cheng Huang
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Gregory Sharp
- Department of Radiation Oncology, Massachusetts General Hospital, Boston, Massachusetts 02114
| | - Shoujun Zhou
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Qingmao Hu
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Chihua Fang
- Department of Hepatology (I), Zhujiang Hospital, Southern Medical University, Guangzhou 510280, China
| | - Yingfang Fan
- Department of Hepatology (I), Zhujiang Hospital, Southern Medical University, Guangzhou 510280, China
| | - Fucang Jia
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
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Zheng Y, Ai D, Mu J, Cong W, Wang X, Zhao H, Yang J. Automatic liver segmentation based on appearance and context information. Biomed Eng Online 2017; 16:16. [PMID: 28088195 PMCID: PMC5237528 DOI: 10.1186/s12938-016-0296-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 12/08/2016] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND Automated image segmentation has benefits for reducing clinicians' workload, quicker diagnosis, and a standardization of the diagnosis. METHODS This study proposes an automatic liver segmentation approach based on appearance and context information. The relationship between neighboring pixels in blocks is utilized to estimate appearance information, which is used for training the first classifier and obtaining the probability distribution map. The map is used for extracting context information, along with appearance features, to train the next classifier. The prior probability distribution map is achieved after iterations and refined through an improved random walk for liver segmentation without user interaction. RESULTS The proposed approach is evaluated using CT images with eight contemporary approaches, and it achieves the highest VOE, RVD, ASD, RMSD and MSD. It also achieves a high average score of 76 using the MICCAI-2007 Grand Challenge scoring system. CONCLUSIONS Experimental results show that the proposed method is superior to eight other state of the art methods.
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Affiliation(s)
- Yongchang Zheng
- Department of Liver Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730 China
| | - Danni Ai
- Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Electronics, Beijing Institute of Technology, Beijing, 100081 China
| | - Jinrong Mu
- Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Electronics, Beijing Institute of Technology, Beijing, 100081 China
| | - Weijian Cong
- Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Electronics, Beijing Institute of Technology, Beijing, 100081 China
| | - Xuan Wang
- Department of Radiology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730 China
| | - Haitao Zhao
- Department of Liver Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100730 China
| | - Jian Yang
- Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Electronics, Beijing Institute of Technology, Beijing, 100081 China
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Cai W, He B, Fan Y, Fang C, Jia F. Comparison of liver volumetry on contrast-enhanced CT images: one semiautomatic and two automatic approaches. J Appl Clin Med Phys 2016; 17:118-127. [PMID: 27929487 PMCID: PMC5690519 DOI: 10.1120/jacmp.v17i6.6485] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Revised: 08/05/2016] [Accepted: 08/02/2016] [Indexed: 12/26/2022] Open
Abstract
This study was to evaluate the accuracy, consistency, and efficiency of three liver volumetry methods- one interactive method, an in-house-developed 3D medical Image Analysis (3DMIA) system, one automatic active shape model (ASM)-based segmentation, and one automatic probabilistic atlas (PA)-guided segmentation method on clinical contrast-enhanced CT images. Forty-two datasets, including 27 normal liver and 15 space-occupying liver lesion patients, were retrospectively included in this study. The three methods - one semiautomatic 3DMIA, one automatic ASM-based, and one automatic PA-based liver volumetry - achieved an accuracy with VD (volume difference) of -1.69%, -2.75%, and 3.06% in the normal group, respectively, and with VD of -3.20%, -3.35%, and 4.14% in the space-occupying lesion group, respectively. However, the three methods achieved an efficiency of 27.63 mins, 1.26 mins, 1.18 mins on average, respectively, compared with the manual volumetry, which took 43.98 mins. The high intraclass correlation coefficient between the three methods and the manual method indicated an excel-lent agreement on liver volumetry. Significant differences in segmentation time were observed between the three methods (3DMIA, ASM, and PA) and the manual volumetry (p < 0.001), as well as between the automatic volumetries (ASM and PA) and the semiautomatic volumetry (3DMIA) (p < 0.001). The semiautomatic interactive 3DMIA, automatic ASM-based, and automatic PA-based liver volum-etry agreed well with manual gold standard in both the normal liver group and the space-occupying lesion group. The ASM- and PA-based automatic segmentation have better efficiency in clinical use.
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Affiliation(s)
- Wei Cai
- Department of Hepatobiliary Surgery (I)Zhujiang HospitalSouthern Medical UniversityGuangzhouGuangdongChina
- Research Lab for Medical Imaging and Digital SurgeryShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenGuangdongChina
| | - Baochun He
- Research Lab for Medical Imaging and Digital SurgeryShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenGuangdongChina
| | - Yingfang Fan
- Department of Hepatobiliary Surgery (I)Zhujiang HospitalSouthern Medical UniversityGuangzhouGuangdongChina
| | - Chihua Fang
- Department of Hepatobiliary Surgery (I)Zhujiang HospitalSouthern Medical UniversityGuangzhouGuangdongChina
| | - Fucang Jia
- Research Lab for Medical Imaging and Digital SurgeryShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenGuangdongChina
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