Oyster reef restoration fails to recoup global historic ecosystem losses despite substantial biodiversity gain

Towards ecosystem-based techniques for tipping point detection

An ecosystem shifts to an alternative stable state when a threshold of accumulated pressure (i.e. direct impact of environmental change or human activities) is exceeded. Detecting this threshold in empirical data remains a challenge because ecosystems are governed by complex interlinkages and feedback loops between their components and pressures. In addition, multiple feedback mechanisms exist that can make an ecosystem resilient to state shifts. Therefore, unless a broad ecological perspective is used to detect state shifts, it remains questionable to what extent current detection methods really capture ecosystem state shifts and whether inferences made from smaller scale analyses can be implemented into ecosystem management. We reviewed the techniques currently used for retrospective detection of state shifts detection from empirical data. We show that most techniques are not suitable for taking a broad ecosystem perspective because approximately 85% do not combine intervariable non-linear relationships and high-dimensional data from multiple ecosystem variables, but rather tend to focus on one subsystem of the ecosystem. Thus, our perception of state shifts may be limited by methods that are often used on smaller data sets, unrepresentative of whole ecosystems. By reviewing the characteristics, advantages, and limitations of the current techniques, we identify methods that provide the potential to incorporate a broad ecosystem-based approach. We therefore provide perspectives into developing techniques better suited for detecting ecosystem state shifts that incorporate intervariable interactions and high-dimensionality data.

Oyster Restoration to Recover Ecosystem Services

Oyster reef loss represents one of the most dramatic declines of a foundation species worldwide. Oysters provide valuable ecosystem services (ES), including habitat provisioning, water filtration, and shoreline protection. Since the 1990s, a global community of science and practice has organized around oyster restoration with the goal of restoring these valuable services. We highlight ES-based approaches throughout the restoration process, consider applications of emerging technologies, and review knowledge gaps about the life histories and ES provisioning of underrepresented species. Climate change will increasingly affect oyster populations, and we assess how restoration practices can adapt to these changes. Considering ES throughout the restoration process supports adaptive management. For a rapidly growing restoration practice, we highlight the importance of early community engagement, long-term monitoring, and adapting actions to local conditions to achieve desired outcomes.

Assessing the ecological functioning and biodiversity of remnant native flat oyster (Ostrea angasi) reefs in temperate southeast Australia

Oyster reefs are critically endangered coastal habitats which provide valuable ecosystems services. Despite their importance, there remains a significant knowledge gap in our understanding of how oyster and sediment characteristics influence the ecological functioning and biodiversity of remnant Australian flat oyster (Ostrea angasi) reefs. To inform restoration efforts, we assessed relationships between community respiration rates (CR), inorganic nitrogen fluxes, filtration rates, biodiversity, and oyster morphometrics as well as sediment conditions for three remanent flat oyster reefs (Oyster Cove, Ralphs Bay, and Quarantine Bay) in southeast Tasmania. Additionally, we explored relationships between net denitrification, and flat oyster morphometrics and sediment conditions at one of the sites (Ralphs Bay) in southeast Tasmania. We observed positive relationships between CR, inorganic nitrogen fluxes, filtration rates, and live flat oyster biomass, as well as between the richness and biomass of associated taxa and total flat oyster biomass (both tissue and shell including dead shell), across all three locations. We also found an increase in net denitrification associated with live oyster biomass at one of the oyster reefs (Ralphs Bay). The CR, inorganic nitrogen fluxes, filtration rates, diversity of taxa and biomass of bivalves and flat oyster biomass was higher at Ralphs Bay, which has the most intact reef, compared to the other two locations. In contrast to other studies, the organic and silt content of the sediment showed limited influence on CR, inorganic nitrogen fluxes, filtration rates and net denitrification. CR, and inorganic nitrogen fluxes in these flat oyster reefs were like other restored and natural oyster reefs globally, but net denitrification, filtration rate and taxonomic richness exceeded those previously observed globally. These results highlight the important role of oyster biomass in enhancing water quality and biodiversity. Burgeoning flat oyster reef restoration initiatives should prioritise the enhancement of both live oyster populations and dead shells to recover their associated ecological functions and biological diversity.

Determining the best practice for Sydney rock oyster, Saccostrea glomerata, reef restoration and enhanced ecological benefits

BACKGROUND

Shellfish reef restoration is relatively new in Australia, particularly to intertidal estuarine environments. In late 2019/early 2020 the first large-scale shellfish reef restoration project of the Sydney rock oyster, Saccostrea glomerata was undertaken in the Myall and Karuah Rivers, Port Stephens, on the mid north coast of New South Wales (NSW), Australia. The present study aimed to determine whether locally sourced clean conspecific oyster shells, and/or locally quarried rocks were better for natural recruitment of natural S. glomerata for large-scale oyster reef restoration, and subsequent recruitment of fishes and invertebrates. Over two years, recruitment of S. glomerata spat, and associated fishes and invertebrates were assessed on reefs made of: (1) rock, and (2) rock and shell.

RESULTS

The mean (± SE) density of oyster spat on rock reefs (Myall River: 1790 ± 48, Karuah River: 1928 ± 68) was significantly greater (Myall River: ANOVA Si: MS 2, 18 = 31080167, F = 96.05, P < 0.001, Karuah River: ANOVA Si x Ti: MS 18, 270 = 2965449, F = 5.99, P < 0.001) than on rock and shell reefs (Myall River: 840 ± 40, Karuah River: 1505 ± 75). Rock reefs had significantly greater densities (Myall River: ANOVA Si x Ti: MS 18, 270 = 15657, F = 2.71, P < 0.001, Karuah River: ANOVA Si x Ti: MS 18, 270 = 20322, F = 5.25, P < 0.001) of the most abundant invertebrate, Bembicium auratum (Myall River: 85 ± 9, Karuah River: 100 ± 8) than reefs of rock and shell (Myall River: 59 ± 8, Karuah River: 44 ± 5), but there was no significant difference in the diversity and relative abundance of the most abundant species of fish, Acanthopagrus australis.

CONCLUSIONS

This study demonstrates that using locally sourced rock is better for S. glomerata recruitment than shells. Although shell might have benefits that were not investigated in the present study, such as elicit greater social licence for oyster reef restoration projects, but as shown here, it may not be beneficial from an ecological perspective. With the global expansion of the range of different native species of reef oysters for restoration, the appropriate material used for reef bases needs to be chosen for a specific species and purpose.

A seasonal study on the microbiomes of Diploid vs. Triploid eastern oysters and their denitrification potential

Oyster reefs are hotspots of denitrification mediated removal of dissolved nitrogen (N), however, information on their denitrifier microbiota is scarce. Furthermore, in oyster aquaculture, triploids are often preferred over diploids, yet again, microbiome differences between oyster ploidies are unknown. To address these knowledge gaps, farmed diploid and triploid oysters were collected over an annual growth cycle and analyzed using shotgun metagenomics and quantitative microbial elemental cycling (QMEC) techniques. Regardless of ploidy, Psychrobacter genus was abundant, with positive correlations found for genes of central metabolism, DNA metabolism, and carbohydrate metabolism. MAGs (metagenome-assembled genomes) yielded multiple Psychrobacter genomes harboring norB, narH, narI, and nirK denitrification genes, indicating their functional relevance within the eastern oysters. QMEC analysis indicated the predominance of carbon (C) and nitrogen (N) cycling genes, with no discernable patterns between ploidies. Among the N-cycling genes, the nosZII clade was overrepresented, suggesting its role in the eastern oyster's N removal processes.