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For: Oliveri P, Davidson EH. Development. Built to run, not fail. Science 2007;315:1510-1. [PMID: 17363653 DOI: 10.1126/science.1140979] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Number Cited by Other Article(s)
1
Rothenberg EV, Göttgens B. How haematopoiesis research became a fertile ground for regulatory network biology as pioneered by Eric Davidson. Curr Opin Hematol 2021;28:1-10. [PMID: 33229891 PMCID: PMC7755131 DOI: 10.1097/moh.0000000000000628] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
2
Verd B, Monk NAM, Jaeger J. Modularity, criticality, and evolvability of a developmental gene regulatory network. eLife 2019;8:e42832. [PMID: 31169494 PMCID: PMC6645726 DOI: 10.7554/elife.42832] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Accepted: 06/05/2019] [Indexed: 01/16/2023]  Open
3
Rothenberg EV. Eric Davidson: Steps to a gene regulatory network for development. Dev Biol 2016;412:S7-19. [PMID: 26825392 DOI: 10.1016/j.ydbio.2016.01.020] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
4
Cavalieri V, Spinelli G. Early asymmetric cues triggering the dorsal/ventral gene regulatory network of the sea urchin embryo. eLife 2014;3:e04664. [PMID: 25457050 PMCID: PMC4273433 DOI: 10.7554/elife.04664] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Accepted: 12/01/2014] [Indexed: 12/16/2022]  Open
5
Annunziata R, Arnone MI. A dynamic regulatory network explains ParaHox gene control of gut patterning in the sea urchin. Development 2014;141:2462-72. [PMID: 24850857 DOI: 10.1242/dev.105775] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
6
Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo. Proc Natl Acad Sci U S A 2014;111:E906-13. [PMID: 24556994 DOI: 10.1073/pnas.1323105111] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
7
Andrikou C, Iovene E, Rizzo F, Oliveri P, Arnone MI. Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors. EvoDevo 2013;4:33. [PMID: 24295205 PMCID: PMC4175510 DOI: 10.1186/2041-9139-4-33] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2013] [Accepted: 10/02/2013] [Indexed: 01/01/2023]  Open
8
Materna SC, Davidson EH. A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos. Dev Biol 2012;364:77-87. [PMID: 22306924 DOI: 10.1016/j.ydbio.2012.01.017] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Revised: 01/18/2012] [Accepted: 01/20/2012] [Indexed: 01/13/2023]
9
Synthetic in vivo validation of gene network circuitry. Proc Natl Acad Sci U S A 2012;109:1548-53. [PMID: 22238426 DOI: 10.1073/pnas.1119905109] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
10
Davidson EH. Emerging properties of animal gene regulatory networks. Nature 2010;468:911-20. [PMID: 21164479 PMCID: PMC3967874 DOI: 10.1038/nature09645] [Citation(s) in RCA: 407] [Impact Index Per Article: 27.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
11
Davidson EH, Erwin DH. Evolutionary innovation and stability in animal gene networks. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2010;314:182-6. [PMID: 19937660 DOI: 10.1002/jez.b.21329] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
12
Nowick K, Stubbs L. Lineage-specific transcription factors and the evolution of gene regulatory networks. Brief Funct Genomics 2010;9:65-78. [PMID: 20081217 DOI: 10.1093/bfgp/elp056] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
13
Peter IS, Davidson EH. Modularity and design principles in the sea urchin embryo gene regulatory network. FEBS Lett 2010;583:3948-58. [PMID: 19932099 DOI: 10.1016/j.febslet.2009.11.060] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2009] [Accepted: 11/16/2009] [Indexed: 01/22/2023]
14
Network design principles from the sea urchin embryo. Curr Opin Genet Dev 2009;19:535-40. [PMID: 19913405 DOI: 10.1016/j.gde.2009.10.007] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2009] [Accepted: 10/07/2009] [Indexed: 12/21/2022]
15
Lamm E. Conceptual and Methodological Biases in Network Models. Ann N Y Acad Sci 2009;1178:291-304. [DOI: 10.1111/j.1749-6632.2009.05009.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
16
Peter IS, Davidson EH. Genomic control of patterning. THE INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY 2009;53:707-16. [PMID: 19378258 DOI: 10.1387/ijdb.072495ip] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
17
Bolouri H, Davidson EH. The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example. Dev Biol 2009;340:170-8. [PMID: 19523466 DOI: 10.1016/j.ydbio.2009.06.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2009] [Revised: 05/20/2009] [Accepted: 06/05/2009] [Indexed: 10/20/2022]
18
Su YH, Li E, Geiss GK, Longabaugh WJR, Krämer A, Davidson EH. A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo. Dev Biol 2009;329:410-21. [PMID: 19268450 DOI: 10.1016/j.ydbio.2009.02.029] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2008] [Revised: 01/27/2009] [Accepted: 02/25/2009] [Indexed: 11/17/2022]
19
Ettensohn CA. Lessons from a gene regulatory network: echinoderm skeletogenesis provides insights into evolution, plasticity and morphogenesis. Development 2009;136:11-21. [PMID: 19060330 DOI: 10.1242/dev.023564] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
20
Hinman VF, Yankura KA, McCauley BS. Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2009;1789:326-32. [PMID: 19284985 DOI: 10.1016/j.bbagrm.2009.01.004] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2008] [Revised: 12/26/2008] [Accepted: 01/14/2009] [Indexed: 01/15/2023]
21
de-Leon SBT, Davidson EH. Modeling the dynamics of transcriptional gene regulatory networks for animal development. Dev Biol 2009;325:317-28. [PMID: 19028486 PMCID: PMC4100934 DOI: 10.1016/j.ydbio.2008.10.043] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2008] [Revised: 10/14/2008] [Accepted: 10/21/2008] [Indexed: 01/04/2023]
22
Cameron RA, Samanta M, Yuan A, He D, Davidson E. SpBase: the sea urchin genome database and web site. Nucleic Acids Res 2009;37:D750-4. [PMID: 19010966 PMCID: PMC2686435 DOI: 10.1093/nar/gkn887] [Citation(s) in RCA: 151] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2008] [Accepted: 10/20/2008] [Indexed: 11/29/2022]  Open
23
A gene regulatory network armature for T lymphocyte specification. Proc Natl Acad Sci U S A 2008;105:20100-5. [PMID: 19104054 DOI: 10.1073/pnas.0806501105] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
24
Properties of developmental gene regulatory networks. Proc Natl Acad Sci U S A 2008;105:20063-6. [PMID: 19104053 DOI: 10.1073/pnas.0806007105] [Citation(s) in RCA: 177] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
25
A protocol for unraveling gene regulatory networks. Nat Protoc 2008;3:1876-87. [DOI: 10.1038/nprot.2008.187] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
26
Longabaugh WJR, Davidson EH, Bolouri H. Visualization, documentation, analysis, and communication of large-scale gene regulatory networks. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2008;1789:363-74. [PMID: 18757046 DOI: 10.1016/j.bbagrm.2008.07.014] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2008] [Accepted: 07/30/2008] [Indexed: 10/21/2022]
27
Punwani JA, Rabiger DS, Lloyd A, Drews GN. The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2008;55:406-14. [PMID: 18410484 DOI: 10.1111/j.1365-313x.2008.03514.x] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
28
Kim J, Kim TG, Jung SH, Kim JR, Park T, Heslop-Harrison P, Cho KH. Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity. ACTA ACUST UNITED AC 2008;24:1516-22. [PMID: 18467345 DOI: 10.1093/bioinformatics/btn229] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
29
Oliveri P, Tu Q, Davidson EH. Global regulatory logic for specification of an embryonic cell lineage. Proc Natl Acad Sci U S A 2008;105:5955-62. [PMID: 18413610 PMCID: PMC2329687 DOI: 10.1073/pnas.0711220105] [Citation(s) in RCA: 288] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2007] [Indexed: 11/18/2022]  Open
30
Newman SA, Bhat R. Dynamical patterning modules: physico-genetic determinants of morphological development and evolution. Phys Biol 2008;5:015008. [PMID: 18403826 DOI: 10.1088/1478-3975/5/1/015008] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
31
Simpson P, Ayyar S. Chapter 3 Evolution of Cis‐Regulatory Sequences in Drosophila. LONG-RANGE CONTROL OF GENE EXPRESSION 2008;61:67-106. [DOI: 10.1016/s0065-2660(07)00003-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
32
Evolutionary plasticity of developmental gene regulatory network architecture. Proc Natl Acad Sci U S A 2007;104:19404-9. [PMID: 18042699 DOI: 10.1073/pnas.0709994104] [Citation(s) in RCA: 111] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
33
Muratoglu S, Hough B, Mon ST, Fossett N. The GATA factor Serpent cross-regulates lozenge and u-shaped expression during Drosophila blood cell development. Dev Biol 2007;311:636-49. [PMID: 17869239 PMCID: PMC2132443 DOI: 10.1016/j.ydbio.2007.08.015] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2007] [Revised: 08/02/2007] [Accepted: 08/07/2007] [Indexed: 10/22/2022]
34
Istrail S, De-Leon SBT, Davidson EH. The regulatory genome and the computer. Dev Biol 2007;310:187-95. [PMID: 17822690 DOI: 10.1016/j.ydbio.2007.08.009] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2007] [Revised: 07/31/2007] [Accepted: 08/04/2007] [Indexed: 11/28/2022]
35
Materna SC, Davidson EH. Logic of gene regulatory networks. Curr Opin Biotechnol 2007;18:351-4. [PMID: 17689240 PMCID: PMC2031216 DOI: 10.1016/j.copbio.2007.07.008] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2007] [Accepted: 07/12/2007] [Indexed: 11/21/2022]
36
Revilla-i-Domingo R, Oliveri P, Davidson EH. A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres. Proc Natl Acad Sci U S A 2007;104:12383-8. [PMID: 17636127 PMCID: PMC1941478 DOI: 10.1073/pnas.0705324104] [Citation(s) in RCA: 117] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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