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For: Satterlee JW, Alonso D, Gramazio P, Jenike KM, He J, Arrones A, Villanueva G, Plazas M, Ramakrishnan S, Benoit M, Gentile I, Hendelman A, Shohat H, Fitzgerald B, Robitaille GM, Green Y, Swartwood K, Passalacqua MJ, Gagnon E, Hilgenhof R, Huggins TD, Eizenga GC, Gur A, Rutten T, Stein N, Yao S, Poncet A, Bellot C, Frary A, Knapp S, Bendahmane M, Särkinen T, Gillis J, Van Eck J, Schatz MC, Eshed Y, Prohens J, Vilanova S, Lippman ZB. Convergent evolution of plant prickles by repeated gene co-option over deep time. Science 2024;385:eado1663. [PMID: 39088611 PMCID: PMC11305333 DOI: 10.1126/science.ado1663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 06/06/2024] [Indexed: 08/03/2024]
Number Cited by Other Article(s)
1
Dai Z, Guan J, Miao H, Beckles DM, Liu X, Gu X, Dong S, Zhang S. An intronic SNP in the Carotenoid Cleavage Dioxygenase 1 (CsCCD1) controls yellow flesh formation in cucumber fruit (Cucumis sativus L.). PLANT BIOTECHNOLOGY JOURNAL 2025;23:2182-2193. [PMID: 40095761 PMCID: PMC12120889 DOI: 10.1111/pbi.70034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Revised: 01/09/2025] [Accepted: 02/04/2025] [Indexed: 03/19/2025]
2
Joshi S, Mohapatra S, Kumar D, Joshi A, Iyer M, Sowdhamini R. GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database. Database (Oxford) 2025;2025:baaf035. [PMID: 40343712 PMCID: PMC12063530 DOI: 10.1093/database/baaf035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 01/08/2025] [Accepted: 04/09/2025] [Indexed: 05/11/2025]
3
van Beveren F, Boele Y, Puginier C, Bianconi ME, Libourel C, Bonhomme M, Keller J, Delaux P. Ectomycorrhizal symbiosis evolved independently and by convergent gene duplication in rosid lineages. THE NEW PHYTOLOGIST 2025;246:1432-1438. [PMID: 40065498 PMCID: PMC12018775 DOI: 10.1111/nph.70054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2025] [Accepted: 02/14/2025] [Indexed: 04/25/2025]
4
Benoit M, Jenike KM, Satterlee JW, Ramakrishnan S, Gentile I, Hendelman A, Passalacqua MJ, Suresh H, Shohat H, Robitaille GM, Fitzgerald B, Alonge M, Wang X, Santos R, He J, Ou S, Golan H, Green Y, Swartwood K, Karavolias NG, Sierra GP, Orejuela A, Roda F, Goodwin S, McCombie WR, Kizito EB, Gagnon E, Knapp S, Särkinen TE, Frary A, Gillis J, Van Eck J, Schatz MC, Lippman ZB. Solanum pan-genetics reveals paralogues as contingencies in crop engineering. Nature 2025;640:135-145. [PMID: 40044854 PMCID: PMC11964936 DOI: 10.1038/s41586-025-08619-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Accepted: 01/09/2025] [Indexed: 03/30/2025]
5
Knapp S, Gouvêa YF, Giacomin LL. A revision of the endemic Brazilian Solanumhexandrum group (Leptostemonum, Solanum, Solanaceae). PHYTOKEYS 2025;253:199-259. [PMID: 40115195 PMCID: PMC11923794 DOI: 10.3897/phytokeys.253.138216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2024] [Accepted: 02/09/2025] [Indexed: 03/23/2025]
6
Zhang L, Liu Y, Huang Y, Zhang Y, Fu Y, Xiao Y, Chen S, Zhang K, Cheng F. Solanaceae pan-genomes reveal extensive fractionation and functional innovation of duplicated genes. PLANT COMMUNICATIONS 2025;6:101231. [PMID: 39719828 PMCID: PMC11956106 DOI: 10.1016/j.xplc.2024.101231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 11/24/2024] [Accepted: 12/21/2024] [Indexed: 12/26/2024]
7
He W, Li X, Qian Q, Shang L. The developments and prospects of plant super-pangenomes: Demands, approaches, and applications. PLANT COMMUNICATIONS 2025;6:101230. [PMID: 39722458 PMCID: PMC11897476 DOI: 10.1016/j.xplc.2024.101230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2024] [Revised: 12/04/2024] [Accepted: 12/20/2024] [Indexed: 12/28/2024]
8
Liu W, Xu W, Gao Y, Qi X, Liu F, Wang J, Li L, Zhou Y, Chen W, Jiang Y, Cui J, Wang Y, Wang QM. The role of the sucrose synthase gene in promoting thorn occurrence and vegetative growth in Lycium ruthenicum. PLANT MOLECULAR BIOLOGY 2025;115:30. [PMID: 39918761 DOI: 10.1007/s11103-025-01560-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2024] [Accepted: 01/21/2025] [Indexed: 02/09/2025]
9
Wright ES. Tandem Repeats Provide Evidence for Convergent Evolution to Similar Protein Structures. Genome Biol Evol 2025;17:evaf013. [PMID: 39852593 PMCID: PMC11812678 DOI: 10.1093/gbe/evaf013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2024] [Accepted: 01/17/2025] [Indexed: 01/26/2025]  Open
10
Whiteman NK. Insect herbivory: An inordinate fondness for plant cell wall degrading enzymes. Curr Biol 2025;35:R107-R109. [PMID: 39904308 DOI: 10.1016/j.cub.2024.12.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2025]
11
Omondi E, Barchi L, Gaccione L, Portis E, Toppino L, Tassone MR, Alonso D, Prohens J, Rotino GL, Schafleitner R, van Zonneveld M, Giuliano G. Association analyses reveal both anthropic and environmental selective events during eggplant domestication. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2025;121:e17229. [PMID: 39918113 PMCID: PMC11803709 DOI: 10.1111/tpj.17229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 11/25/2024] [Accepted: 12/16/2024] [Indexed: 02/11/2025]
12
Figueiredo YG, Gasparini K, Bulut M, Fernie AR, Zsögön A. The genetic basis of prickle loss in the Solanaceae. TRENDS IN PLANT SCIENCE 2025;30:119-121. [PMID: 39389892 DOI: 10.1016/j.tplants.2024.09.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Revised: 09/24/2024] [Accepted: 09/24/2024] [Indexed: 10/12/2024]
13
Feng H, Fan W, Liu M, Huang J, Li B, Sang Q, Song B. Cross-species single-nucleus analysis reveals the potential role of whole-genome duplication in the evolution of maize flower development. BMC Genomics 2025;26:3. [PMID: 39754060 PMCID: PMC11699695 DOI: 10.1186/s12864-024-11186-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Accepted: 12/26/2024] [Indexed: 01/06/2025]  Open
14
Han Y. Decoding the genetic basis of secretory tissues in plants. HORTICULTURE RESEARCH 2025;12:uhae263. [PMID: 39802735 PMCID: PMC11718388 DOI: 10.1093/hr/uhae263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 09/08/2024] [Indexed: 01/16/2025]
15
Zhang Z, Yang T, Liu Y, Wu S, Sun H, Wu J, Li Y, Zheng Y, Ren H, Yang Y, Shi S, Wang W, Pan Q, Lian L, Duan S, Zhu Y, Cai Y, Zhou H, Zhang H, Tang K, Cui J, Gao D, Chen L, Jiang Y, Sun X, Zhou X, Fei Z, Ma N, Gao J. Haplotype-resolved genome assembly and resequencing provide insights into the origin and breeding of modern rose. NATURE PLANTS 2024;10:1659-1671. [PMID: 39394508 DOI: 10.1038/s41477-024-01820-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 09/13/2024] [Indexed: 10/13/2024]
16
Zhao C, Yin H, Li Y, Zhou J, Bi S, Yan W, Li Y. Evolutionary Analysis and Catalytic Function of LOG Proteins in Plants. Genes (Basel) 2024;15:1420. [PMID: 39596620 PMCID: PMC11593424 DOI: 10.3390/genes15111420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Revised: 10/21/2024] [Accepted: 10/30/2024] [Indexed: 11/29/2024]  Open
17
Isko EC, Harpole CE, Zheng XM, Zhan H, Davis MB, Zador AM, Banerjee A. Selective expansion of motor cortical projections in the evolution of vocal novelty. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.13.612752. [PMID: 39484467 PMCID: PMC11526862 DOI: 10.1101/2024.09.13.612752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/03/2024]
18
Ertl H. Convergent evolution of prickles across crops. Nat Rev Genet 2024;25:676. [PMID: 39174811 DOI: 10.1038/s41576-024-00771-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2024]
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