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Wilmes B, Kock H, Glagla S, Albrecht D, Voigt B, Markert S, Gardebrecht A, Bode R, Danchin A, Feller G, Hecker M, Schweder T. Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125. Appl Environ Microbiol 2011; 77:1276-83. [PMID: 21183643 PMCID: PMC3067249 DOI: 10.1128/aem.01750-10] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2010] [Accepted: 12/13/2010] [Indexed: 11/20/2022] Open
Abstract
The psychrophilic model bacterium Pseudoalteromonas haloplanktis is characterized by remarkably fast growth rates under low-temperature conditions in a range from 5°C to 20°C. In this study the proteome of cellular compartments, the cytoplasm and periplasm, of P. haloplanktis strain TAC125 was analyzed under exponential growth conditions at a permissive temperature of 16°C. By means of two-dimensional protein gel electrophoresis and mass spectrometry, a first inventory of the most abundant cytoplasmic and periplasmic proteins expressed in a peptone-supplemented minimal medium was established. By this approach major enzymes of the amino acid catabolism of this marine bacterium could be functionally deduced. The cytoplasmic proteome showed a predominance of amino acid degradation pathways and tricarboxylic acid (TCA) cycle enzymes but also the protein synthesis machinery. Furthermore, high levels of cold acclimation and oxidative stress proteins could be detected at this moderate growth temperature. The periplasmic proteome was characterized by a significant abundance of transporters, especially of highly expressed putative TonB-dependent receptors. This high capacity for protein synthesis, efficient amino acid utilization, and substrate transport may contribute to the fast growth rates of the copiotrophic bacterium P. haloplanktis in its natural environments.
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Affiliation(s)
- Boris Wilmes
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Holger Kock
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Susanne Glagla
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Dirk Albrecht
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Birgit Voigt
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Stephanie Markert
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Antje Gardebrecht
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Rüdiger Bode
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Antoine Danchin
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Georges Feller
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Michael Hecker
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
| | - Thomas Schweder
- Institute of Marine Biotechnology, W. Rathenau Str. 49a, 17489 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Department of Pharmaceutical Biotechnology, F.-L. Jahn Str. 17, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Medical Faculty, Fleischmannstr. 8, 17475 Greifswald, Germany, University of Erlangen, Department of Microbiology, Staudtstr. 5, 91058 Erlangen, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, F.-L. Jahn Str. 15, 17487 Greifswald, Germany, Ernst Moritz Arndt University Greifswald, Institute of Microbiology, Department of Biochemistry, F. Hausdorff Str. 4, 17487 Greifswald, Germany, AMAbiotics, Genopole 1, 91030 Evry Cedex, France, University of Liège, Centre for Protein Engineering B6a, 4000 Liège, Belgium
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