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Yu W, Luo L, Qi X, Cao Y, An J, Xie Z, Hu T, Yang P. Insights into the Impact of Trans-Zeatin Overproduction-Engineered Sinorhizobium meliloti on Alfalfa ( Medicago sativa L.) Tolerance to Drought Stress. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:8650-8663. [PMID: 38564678 DOI: 10.1021/acs.jafc.4c00115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Plant growth-promoting rhizobacteria have been shown to enhance plant tolerance to drought stress through various mechanisms. However, there is limited research on improving drought resistance in alfalfa by genetically modifying PGPR to produce increased levels of cytokinins. Herein, we employed synthetic biology approaches to engineer two novel strains of Sinorhizobium meliloti capable of overproducing trans-Zeatin and investigated their potential in enhancing drought tolerance in alfalfa. Our results demonstrate that alfalfa plants inoculated with these engineered S. meliloti strains exhibited reduced wilting and yellowing while maintaining higher relative water content under drought conditions. The engineered S. meliloti-induced tZ activated the activity of antioxidant enzymes and the accumulation of osmolytes. Additionally, the increased endogenous tZ content in plants alleviated the impact of drought stress on the alfalfa photosynthetic rate. However, under nondrought conditions, inoculation with the engineered S. meliloti strains had no significant effect on alfalfa biomass and nodule formation.
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Affiliation(s)
- Wenzhe Yu
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
| | - Li Luo
- Shanghai Key Laboratory of Bio-Energy Crops, Shanghai University, Shanghai 200444, China
| | - Xiangyu Qi
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
| | - Yuman Cao
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
| | - Jie An
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
| | - Zhiguo Xie
- Shaanxi Academy of Forestry, Xi'an 710082, China
| | - Tianming Hu
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
| | - Peizhi Yang
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, China
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Huang CW, Lin C, Nguyen MK, Hussain A, Bui XT, Ngo HH. A review of biosensor for environmental monitoring: principle, application, and corresponding achievement of sustainable development goals. Bioengineered 2023; 14:58-80. [PMID: 37377408 DOI: 10.1080/21655979.2022.2095089] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 06/20/2022] [Accepted: 06/23/2022] [Indexed: 06/29/2023] Open
Abstract
Human health/socioeconomic development is closely correlated to environmental pollution, highlighting the need to monitor contaminants in the real environment with reliable devices such as biosensors. Recently, variety of biosensors gained high attention and employed as in-situ application, in real-time, and cost-effective analytical tools for healthy environment. For continuous environmental monitoring, it is necessary for portable, cost-effective, quick, and flexible biosensing devices. These benefits of the biosensor strategy are related to the Sustainable Development Goals (SDGs) established by the United Nations (UN), especially with reference to clean water and sources of energy. However, the relationship between SDGs and biosensor application for environmental monitoring is not well understood. In addition, some limitations and challenges might hinder the biosensor application on environmental monitoring. Herein, we reviewed the different types of biosensors, principle and applications, and their correlation with SDG 6, 12, 13, 14, and 15 as a reference for related authorities and administrators to consider. In this review, biosensors for different pollutants such as heavy metals and organics were documented. The present study highlights the application of biosensor for achieving SDGs. Current advantages and future research aspects are summarized in this paper.Abbreviations: ATP: Adenosine triphosphate; BOD: Biological oxygen demand; COD: Chemical oxygen demand; Cu-TCPP: Cu-porphyrin; DNA: Deoxyribonucleic acid; EDCs: Endocrine disrupting chemicals; EPA: U.S. Environmental Protection Agency; Fc-HPNs: Ferrocene (Fc)-based hollow polymeric nanospheres; Fe3O4@3D-GO: Fe3O4@three-dimensional graphene oxide; GC: Gas chromatography; GCE: Glassy carbon electrode; GFP: Green fluorescent protein; GHGs: Greenhouse gases; HPLC: High performance liquid chromatography; ICP-MS: Inductively coupled plasma mass spectrometry; ITO: Indium tin oxide; LAS: Linear alkylbenzene sulfonate; LIG: Laser-induced graphene; LOD: Limit of detection; ME: Magnetoelastic; MFC: Microbial fuel cell; MIP: Molecular imprinting polymers; MWCNT: Multi-walled carbon nanotube; MXC: Microbial electrochemical cell-based; NA: Nucleic acid; OBP: Odorant binding protein; OPs: Organophosphorus; PAHs: Polycyclic aromatic hydrocarbons; PBBs: Polybrominated biphenyls; PBDEs: Polybrominated diphenyl ethers; PCBs: Polychlorinated biphenyls; PGE: Polycrystalline gold electrode; photoMFC: photosynthetic MFC; POPs: Persistent organic pollutants; rGO: Reduced graphene oxide; RNA: Ribonucleic acid; SDGs: Sustainable Development Goals; SERS: Surface enhancement Raman spectrum; SPGE: Screen-printed gold electrode; SPR: Surface plasmon resonance; SWCNTs: single-walled carbon nanotubes; TCPP: Tetrakis (4-carboxyphenyl) porphyrin; TIRF: Total internal reflection fluorescence; TIRF: Total internal reflection fluorescence; TOL: Toluene-catabolic; TPHs: Total petroleum hydrocarbons; UN: United Nations; VOCs: Volatile organic compounds.
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Affiliation(s)
- Chi-Wei Huang
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan
| | - Chitsan Lin
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan
- Ph.D. Program in Maritime Science and Technology, College of Maritime, National Kaohsiung University of Science and TechnologyPh.D. Program in Maritime Science and Technology, Kaohsiung, Taiwan
| | - Minh Ky Nguyen
- Ph.D. Program in Maritime Science and Technology, College of Maritime, National Kaohsiung University of Science and TechnologyPh.D. Program in Maritime Science and Technology, Kaohsiung, Taiwan
| | - Adnan Hussain
- Ph. D. Program of Aquatic Science and Technology, College of Hydrosphere Science, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan
| | - Xuan-Thanh Bui
- Department Water Science & Technology, Key Laboratory of Advanced Waste Treatment Technology, Ho Chi Minh City University of Technology (HCMUT), Vietnam National University Ho Chi Minh (VNU-HCM), Ho Chi Minh City, Vietnam
- Department Water Science & Technology, Faculty of Environment & Natural Resources, Ho Chi Minh City University of Technology (HCMUT), Ho Chi Minh City, Vietnam
| | - Huu Hao Ngo
- Department Water Science & Technology, Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney NSW, Australia
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Stewart PS, Owkes M. Simulation of catalase-dependent tolerance of microbial biofilm to hydrogen peroxide with a biofilm computer model. NPJ Biofilms Microbiomes 2023; 9:60. [PMID: 37612330 PMCID: PMC10447567 DOI: 10.1038/s41522-023-00426-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 08/07/2023] [Indexed: 08/25/2023] Open
Abstract
Hydrogen peroxide (HP) is a common disinfectant and antiseptic. When applied to a biofilm, it may be expected that the top layer of the biofilm would be killed by HP, the HP would penetrate further, and eventually eradicate the entire biofilm. However, using the Biofilm.jl computer model, we demonstrate a mechanism by which the biofilm can persist, and even become thicker, in the indefinite treatment with an HP solution at concentrations that are lethal to planktonic microorganisms. This surprising result is found to be dependent on the neutralization of HP by dead biomass, which provides protection for living biomass deeper within the biofilm. Practically, to control a biofilm, this result leads to the concept of treating with an HP dose exceeding a critical threshold concentration rather than a sustained, lower-concentration treatment.
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Affiliation(s)
- Philip S Stewart
- Chemical & Biological Engineering, Montana State University, Bozeman, 59717, MT, USA.
| | - Mark Owkes
- Mechanical & Industrial Engineering, Montana State University, Bozeman, 59717, MT, USA.
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Zhang X, Zhu Y, Li B, Tefsen B, Wang Z, Wells M. We need to plan streamlined environmental impact assessment for the future X-Press Pearl disasters. MARINE POLLUTION BULLETIN 2023; 188:114705. [PMID: 36791553 DOI: 10.1016/j.marpolbul.2023.114705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 01/31/2023] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
Abstract
The X-Press Pearl disaster illustrates the urgent needs for streamlined environmental impact assessment to inform decision making. The environmental contamination caused by the disaster is complex, and the biological impact of different environmental stressors, and at different biological scales, needs to be determined. Traditional methods for analyzing complex environmental stressors are often inefficient and do not reflect the biological impact of pollution. The combination of chemical stressors and biological impacts is the key to environmental impact assessment based on integrated monitoring. Whole-cell bioreporters are tools for rapid, efficient and quantitative detection of the bioavailability, stressor effects, and toxicity of pollutants, i.e., spanning a wide range of applications. Here we propose the view that using whole-cell bioreporter technology to streamline short-term environmental impact assessment for maritime disasters such as the X-Press Pearl is more fit-for-purpose/practical than other approaches in use.
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Affiliation(s)
- Xiaokai Zhang
- Institute of Environmental Processes and Pollution Control, School of Environmental and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Yi Zhu
- Institute of Environmental Processes and Pollution Control, School of Environmental and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Boling Li
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Boris Tefsen
- Department of Molecular Microbiology, Utrecht University, Padualaan 8, CH Utrecht 3584, Netherlands; Natural Sciences, Ronin Institute, Montclair, NJ 07043, USA
| | - Zhenyu Wang
- Institute of Environmental Processes and Pollution Control, School of Environmental and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Mona Wells
- Natural Sciences, Ronin Institute, Montclair, NJ 07043, USA; The Meadows Center for Water and the Environment, Texas State University, San Marcos, TX 78666, USA.
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Zhu Y, Elcin E, Jiang M, Li B, Wang H, Zhang X, Wang Z. Use of whole-cell bioreporters to assess bioavailability of contaminants in aquatic systems. Front Chem 2022; 10:1018124. [PMID: 36247665 PMCID: PMC9561917 DOI: 10.3389/fchem.2022.1018124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 09/14/2022] [Indexed: 11/13/2022] Open
Abstract
Water contamination has become increasingly a critical global environmental issue that threatens human and ecosystems’ health. Monitoring and risk assessment of toxic pollutants in water bodies is essential to identifying water pollution treatment needs. Compared with the traditional monitoring approaches, environmental biosensing via whole-cell bioreporters (WCBs) has exhibited excellent capabilities for detecting bioavailability of multiple pollutants by providing a fast, simple, versatile and economical way for environmental risk assessment. The performance of WCBs is determined by its elements of construction, such as host strain, regulatory and reporter genes, as well as experimental conditions. Previously, numerous studies have focused on the design and construction of WCB rather than improving the detection process and commercialization of this technology. For investigators working in the environmental field, WCB can be used to detect pollutants is more important than how they are constructed. This work provides a review of the development of WCBs and a brief introduction to genetic construction strategies and aims to summarize key studies on the application of WCB technology in detection of water contaminants, including organic pollutants and heavy metals. In addition, the current status of commercialization of WCBs is highlighted.
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Affiliation(s)
- Yi Zhu
- School of Environmental and Civil Engineering, Institute of Environmental Processes and Pollution Control, Jiangnan University, Wuxi, China
| | - Evrim Elcin
- Department of Agricultural Biotechnology, Division of Enzyme and Microbial Biotechnology, Faculty of Agriculture, Aydın Adnan Menderes University, Aydın, Turkey
| | - Mengyuan Jiang
- School of Environmental and Civil Engineering, Institute of Environmental Processes and Pollution Control, Jiangnan University, Wuxi, China
| | - Boling Li
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Hailong Wang
- Biochar Engineering Technology Research Center of Guangdong Province, School of Environmental and Chemical Engineering, Foshan University, Foshan, China
| | - Xiaokai Zhang
- School of Environmental and Civil Engineering, Institute of Environmental Processes and Pollution Control, Jiangnan University, Wuxi, China
- *Correspondence: Xiaokai Zhang,
| | - Zhenyu Wang
- School of Environmental and Civil Engineering, Institute of Environmental Processes and Pollution Control, Jiangnan University, Wuxi, China
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Madhavan M, Mustafa S. Systems biology–the transformative approach to integrate sciences across disciplines. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Life science is the study of living organisms, including bacteria, plants, and animals. Given the importance of biology, chemistry, and bioinformatics, we anticipate that this chapter may contribute to a better understanding of the interdisciplinary connections in life science. Research in applied biological sciences has changed the paradigm of basic and applied research. Biology is the study of life and living organisms, whereas science is a dynamic subject that as a result of constant research, new fields are constantly emerging. Some fields come and go, whereas others develop into new, well-recognized entities. Chemistry is the study of composition of matter and its properties, how the substances merge or separate and also how substances interact with energy. Advances in biology and chemistry provide another means to understand the biological system using many interdisciplinary approaches. Bioinformatics is a multidisciplinary or rather transdisciplinary field that encourages the use of computer tools and methodologies for qualitative and quantitative analysis. There are many instances where two fields, biology and chemistry have intersection. In this chapter, we explain how current knowledge in biology, chemistry, and bioinformatics, as well as its various interdisciplinary domains are merged into life sciences and its applications in biological research.
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Affiliation(s)
- Maya Madhavan
- Department of Biochemistry , Government College for Women , Thiruvananthapuram , Kerala , India
| | - Sabeena Mustafa
- Department of Biostatistics and Bioinformatics , King Abdullah International Medical Research Center (KAIMRC), King Saud Bin Abdulaziz University for Health Sciences, King Abdulaziz Medical City, Ministry of National Guard Health Affairs (MNGHA) , Riyadh , Kingdom of Saudi Arabia
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Imangaliyeva AN, Sela A, Eltzov E, Poverenov E. The polyaminosaccharide-based buffers as a new type of zwitterionic buffering macromolecules for biochemical applications. Carbohydr Polym 2021; 273:118601. [PMID: 34561001 DOI: 10.1016/j.carbpol.2021.118601] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 08/04/2021] [Accepted: 08/19/2021] [Indexed: 11/25/2022]
Abstract
A new type of biocompatible buffers based on zwitterionic polyaminosaccharides is reported. The carboxy- and amino-groups containing carboxymethyl chitosan (CM-CS) was synthesized and reacted with hydrochloric/acetic acid resulting in CM-CS-HCl and CM-CS-HAc buffers with buffering capacity of 20.6 and 15.2 mM/pH. The new buffers were comprehensively characterized for their physicochemical properties and checked on enzymatic reactions of acetylcholinesterase (AChE) and alkaline phosphatase (ALP). Their performance was compared to the phosphate and Tris buffers. The chloride-free, CM-CS-HAc demonstrated excellent buffering activity with Michaelis constants of 0.50 and 1.00 mM and maximum reaction rates of 5.62 and 2.26 μmol/min/mL for AChE and ALP reactions, respectively. Toxicity studies on stress-sensitive bioreporter bacteria verified nontoxicity of CM-CS-HAc. Zwitterionic polyaminosaccharides overcome drawbacks of monomeric buffers, such as interference with enzyme active sites, cell membrane injury and purification difficulties. Therefore, they may become the next generation of effective buffers for biological and biochemical applications.
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Affiliation(s)
- Ainur N Imangaliyeva
- Agro-nanotechnology and Advanced Materials Research Center, Postharvest and Food Sciences Institute, Agricultural Research Organization, The Volcani Institute, Rishon LeZion 7505101, Israel.
| | - Aviad Sela
- Agro-nanotechnology and Advanced Materials Research Center, Postharvest and Food Sciences Institute, Agricultural Research Organization, The Volcani Institute, Rishon LeZion 7505101, Israel; Institute of Biochemistry, Food Science and Nutrition, Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot 7610001, Israel.
| | - Evgeni Eltzov
- Agro-nanotechnology and Advanced Materials Research Center, Postharvest and Food Sciences Institute, Agricultural Research Organization, The Volcani Institute, Rishon LeZion 7505101, Israel.
| | - Elena Poverenov
- Agro-nanotechnology and Advanced Materials Research Center, Postharvest and Food Sciences Institute, Agricultural Research Organization, The Volcani Institute, Rishon LeZion 7505101, Israel.
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Litovco P, Barger N, Li X, Daniel R. Topologies of synthetic gene circuit for optimal fold change activation. Nucleic Acids Res 2021; 49:5393-5406. [PMID: 34009384 PMCID: PMC8136830 DOI: 10.1093/nar/gkab253] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 03/22/2021] [Accepted: 04/06/2021] [Indexed: 11/13/2022] Open
Abstract
Computations widely exist in biological systems for functional regulations. Recently, incoherent feedforward loop and integral feedback controller have been implemented into Escherichia coli to achieve a robust adaptation. Here, we demonstrate that an indirect coherent feedforward loop and mutual inhibition designs can experimentally improve the fold change of promoters, by reducing the basal level while keeping the maximum activity high. We applied both designs to six different promoters in E. coli, starting with synthetic inducible promoters as a proof-of-principle. Then, we examined native promoters that are either functionally specific or systemically involved in complex pathways such as oxidative stress and SOS response. Both designs include a cascade having a repressor and a construct of either transcriptional interference or antisense transcription. In all six promoters, an improvement of up to ten times in the fold change activation was observed. Theoretically, our unitless models show that when regulation strength matches promoter basal level, an optimal fold change can be achieved. We expect that this methodology can be applied in various biological systems for biotechnology and therapeutic applications.
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Affiliation(s)
- Phyana Litovco
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Natalia Barger
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Ximing Li
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Ramez Daniel
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
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Axelrod T, Eltzov E, Lerman M, Harpaz D, Marks RS. Cigarette smoke toxicity modes of action estimated by a bioluminescent bioreporter bacterial panel. Talanta 2021; 226:122076. [PMID: 33676644 DOI: 10.1016/j.talanta.2020.122076] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 12/28/2020] [Accepted: 12/29/2020] [Indexed: 12/15/2022]
Abstract
Cigarette smoking is considered to be a risk factor for several chronic diseases and even premature death. However, despite the importance of this detrimental habit, little seems known in terms of the overall toxicity potential of its ingredients in humans. In this study, a panel of genetically modified bioluminescent bioreporter bacteria was used to evaluate its usefulness in estimating the cigarette smoke's complex molecular mixture on a bacterial toxicity-bioreporter panel, both filtered or unfiltered. This work enabled to confirm the usefulness of cigarette filters, with better protection found in higher priced brands despite both having genotoxic and cytotoxic attributes. Quorum sensing interference was also shown, which may explain why cigarette smokers are at greater risk for pulmonary infections. Moreover, the findings of this study support the fact that the filter is a dominating contributor to reducing the harm caused by cigarette smoke. Increased efforts should be conducted to reduce the harmful effects of cigarette smoke, via increasingly effective filters. To conclude, the panel of bioreporter bacteria was found to be useful in the evaluation of the general effect of the toxic mixture found in cigarette smoke and therefore has the potential to be used in cigarette research, helping researchers pinpoint the reduction of toxicity when working with filter improvement.
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Affiliation(s)
- Tim Axelrod
- Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Faculty of Engineering Science, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel
| | - Evgeni Eltzov
- Institute of Postharvest and Food Science, Department of Postharvest Science, The Volcani Center, Agricultural Research Organization, Rishon LeZion, 7505101, Israel
| | - Merav Lerman
- Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Faculty of Engineering Science, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel
| | - Dorin Harpaz
- Institute of Postharvest and Food Science, Department of Postharvest Science, The Volcani Center, Agricultural Research Organization, Rishon LeZion, 7505101, Israel; Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 761001, Israel
| | - Robert S Marks
- Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Faculty of Engineering Science, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel; National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel; The Ilse Katz Center for Meso and Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel.
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Harpaz D, Veltman B, Sadeh Y, Marks RS, Bernstein N, Eltzov E. The effect of cannabis toxicity on a model microbiome bacterium epitomized by a panel of bioluminescent E. coli. CHEMOSPHERE 2021; 263:128241. [PMID: 33297188 DOI: 10.1016/j.chemosphere.2020.128241] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 08/20/2020] [Accepted: 08/31/2020] [Indexed: 05/27/2023]
Abstract
The world acceptance of medical cannabis slowly widens. Cannabinoids are known as the main therapeutic active compounds in the cannabis plant, yet their bioactive physiological effects are still unknown. In this study, the mode of action of nine selected cannabinoids was examined using a bioluminescent bacterial panel, as well as the extracts of six different cannabis varieties and cannabinoids standards artificial mixtures. The bacterial panel was composed of genetically modified E. coli bacteria that is commonly found in the gut microbiome, to which a lux operon was added to various stress promoters. The panel was exposed to the cannabinoids in order to identify bacterial defense mechanism, via the aforementioned specific stress types response. This enables the understanding of the toxicity mode of action of cannabinoids. From all the tested cannabinoids, only delta-9-tetrahydrocannabinol (THC) and delta-9-tetrahydrocannabinolic acid A (THCA) produced a genotoxic effect, while the other tested cannabinoids, demonstrated cytotoxic or oxidative damages. Unlike pure cannabinoids, cannabis plant extracts exhibited mostly genotoxicity, with minor cytotoxicity or oxidative stress responses. Moreover, cannabinoids standards artificial mixtures produced a different response patterns compared to their individual effects, which may be due to additional synergistic or antagonistic reactions between the mixed chemicals on the bacterial panel. The results showed that despite the lack of cannabigerol (CBG), cannabidivarin (CBDV), cannabinol (CBN), and cannabichromene (CBC) in the artificial solution mimicking the CN6 cannabis variety, a similar response pattern to the cannabinoids standards mixture was obtained. This work contributes to the understanding of such correlations and may provide a realistic view of cannabinoid effects on the human microbiome.
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Affiliation(s)
- Dorin Harpaz
- Institute of Biochemistry, Food Science and Nutrition, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel; Department of Postharvest Science, Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Bet Dagan, 50250, Israel
| | - Boris Veltman
- Institute of Biochemistry, Food Science and Nutrition, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel; Department of Postharvest Science, Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Bet Dagan, 50250, Israel
| | - Yael Sadeh
- Institute of Soil Water and Environmental Sciences, Volcani Center, Agricultural Research Organization, POBox 6, Bet-Dagan, 50250, Israel
| | - Robert S Marks
- Department of Biotechnology Engineering, Faculty of Engineering Science, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel; National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel; The Ilse Katz Center for Meso and Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel
| | - Nirit Bernstein
- Institute of Soil Water and Environmental Sciences, Volcani Center, Agricultural Research Organization, POBox 6, Bet-Dagan, 50250, Israel.
| | - Evgeni Eltzov
- Department of Postharvest Science, Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Bet Dagan, 50250, Israel.
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Ma J, Veltman B, Tietel Z, Tsror L, Liu Y, Eltzov E. Monitoring of infection volatile markers using CMOS-based luminescent bioreporters. Talanta 2020; 219:121333. [PMID: 32887066 DOI: 10.1016/j.talanta.2020.121333] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 06/16/2020] [Accepted: 06/23/2020] [Indexed: 11/28/2022]
Abstract
Over the past two decades, whole-cell biosensors (WCBs) have been widely used in the environmental field, with only few applications proposed for use in agricultural. This study describes the development and optimization of a WCB for the detection of volatile organic compounds (VOCs) that is produced specifically by infected potato tubers. First, the effect of calcium-alginate matrix formation (beads vs. tablets) on the membrane uniformity and sensing efficiency was evaluated. Then, important parameters in the immobilization process were examined for their effect on the sensitivity to the presence of VOCs. The highest sensitivity to the target VOC was obtained by 20 min polymerization of bacterial suspension with optical density of 0.2 at 600 nm, dissolved in low-viscosity sodium alginate (1.5% w/v) and exposure to VOC at 4 °C. After optimization, the lowest limit of detection for three infection-sourced VOCs (nonanal, 3-methyl-1-butanol, and 1-octen-3-ol) was 0.17-, 2.03-, and 2.09-mg/L, respectively, and the sensor sensitivity was improved by 8.9-, 3.1- and 2-fold, respectively. Then, the new optimized immobilization protocol was implemented for the CMOS-based application, which increased the sensor sensitivity to VOC by 3-fold during real-time measurement. This is the first step in creating a sensor for real-time monitoring of crop quality by identifying changes in VOC patterns.
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Affiliation(s)
- Junning Ma
- Department of Postharvest Science, Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Bet Dagan, 50250, Israel; Key Laboratory of Agro-products Quality and Safety Control in Storage and Transport Process, Ministry of Agriculture and Rural Affairs, Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Boris Veltman
- Department of Postharvest Science, Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Bet Dagan, 50250, Israel; Institute of Biochemistry, Food Science and Nutrition, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Zipora Tietel
- Food Quality and Safety, Agricultural Research Organization, Gilat Research Center, MP Negev, Israel
| | - Leah Tsror
- Department of Plant Pathology, Institute of Plant Protection, Agricultural Research Organization, Gilat Research Center, Negev, Israel
| | - Yang Liu
- Key Laboratory of Agro-products Quality and Safety Control in Storage and Transport Process, Ministry of Agriculture and Rural Affairs, Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Evgeni Eltzov
- Department of Postharvest Science, Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Bet Dagan, 50250, Israel; Agro-Nanotechnology Research Center, Agriculture Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel.
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12
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Phonbuppha J, Tinikul R, Wongnate T, Intasian P, Hollmann F, Paul CE, Chaiyen P. A Minimized Chemoenzymatic Cascade for Bacterial Luciferase in Bioreporter Applications. Chembiochem 2020; 21:2073-2079. [PMID: 32187433 DOI: 10.1002/cbic.202000100] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Indexed: 12/17/2022]
Abstract
Bacterial luciferase (Lux) catalyzes a bioluminescence reaction by using long-chain aldehyde, reduced flavin and molecular oxygen as substrates. The reaction can be applied in reporter gene systems for biomolecular detection in both prokaryotic and eukaryotic organisms. Because reduced flavin is unstable under aerobic conditions, another enzyme, flavin reductase, is needed to supply reduced flavin to the Lux-catalyzed reaction. To create a minimized cascade for Lux that would have greater ease of use, a chemoenzymatic reaction with a biomimetic nicotinamide (BNAH) was used in place of the flavin reductase reaction in the Lux system. The results showed that the minimized cascade reaction can be applied to monitor bioluminescence of the Lux reporter in eukaryotic cells effectively, and that it can achieve higher efficiencies than the system with flavin reductase. This development is useful for future applications as high-throughput detection tools for drug screening applications.
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Affiliation(s)
- Jittima Phonbuppha
- School of Biomolecular Science and Engineering (BSE), Vidyasirimedhi Institute of Science and Technology (VISTEC), 555 Moo 1, Payupnai, Wangchan, Rayong, 21210, Thailand
| | - Ruchanok Tinikul
- Department of Biochemistry and Center for Excellence in Protein and Enzyme Technology, Faculty of Science, Mahidol University, 272 Rama VI Road, Ratchathewi, Bangkok, 10400, Thailand
| | - Thanyaporn Wongnate
- School of Biomolecular Science and Engineering (BSE), Vidyasirimedhi Institute of Science and Technology (VISTEC), 555 Moo 1, Payupnai, Wangchan, Rayong, 21210, Thailand
| | - Pattarawan Intasian
- School of Biomolecular Science and Engineering (BSE), Vidyasirimedhi Institute of Science and Technology (VISTEC), 555 Moo 1, Payupnai, Wangchan, Rayong, 21210, Thailand
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft (The, Netherlands
| | - Caroline E Paul
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft (The, Netherlands
| | - Pimchai Chaiyen
- School of Biomolecular Science and Engineering (BSE), Vidyasirimedhi Institute of Science and Technology (VISTEC), 555 Moo 1, Payupnai, Wangchan, Rayong, 21210, Thailand.,Department of Biochemistry and Center for Excellence in Protein and Enzyme Technology, Faculty of Science, Mahidol University, 272 Rama VI Road, Ratchathewi, Bangkok, 10400, Thailand
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13
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Abazari R, Morsali A, Dubal DP. An advanced composite with ultrafast photocatalytic performance for the degradation of antibiotics by natural sunlight without oxidizing the source over TMU-5@Ni–Ti LDH: mechanistic insight and toxicity assessment. Inorg Chem Front 2020. [DOI: 10.1039/d0qi00050g] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Pharmaceuticals are considered as emerging organic contaminants that have become a serious environmental problem, which endanger human health and environmental bio-diversity.
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Affiliation(s)
- Reza Abazari
- Department of Chemistry
- Tarbiat Modares University
- Tehran
- Iran
| | - Ali Morsali
- Department of Chemistry
- Tarbiat Modares University
- Tehran
- Iran
| | - Deepak P. Dubal
- Centre for Materials Science
- Queensland University of Technology (QUT)
- Brisbane
- Australia
- School of Chemistry and Physics
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14
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Barger N, Litovco P, Li X, Habib M, Daniel R. Synthetic metabolic computation in a bioluminescence-sensing system. Nucleic Acids Res 2019; 47:10464-10474. [PMID: 31544939 PMCID: PMC6821183 DOI: 10.1093/nar/gkz807] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Revised: 09/09/2019] [Accepted: 09/16/2019] [Indexed: 02/07/2023] Open
Abstract
Bioluminescence is visible light produced and emitted by living cells using various biological systems (e.g. luxCDABE cassette). Today, this phenomenon is widely exploited in biological research, biotechnology and medical applications as a quantitative technique for the detection of biological signals. However, this technique has mostly been used to detect a single input only. In this work, we re-engineered the complex genetic structure of luxCDABE cassette to build a biological unit that can detect multi-inputs, process the cellular information and report the computation results. We first split the luxCDABE operon into several parts to create a genetic circuit that can compute a soft minimum in living cells. Then, we used the new design to implement an AND logic function with better performance as compared to AND logic functions based on protein-protein interactions. Furthermore, by controlling the reverse reaction of the luxCDABE cassette independently from the forward reaction, we built a comparator with a programmable detection threshold. Finally, we applied the redesigned cassette to build an incoherent feedforward loop that reduced the unwanted crosstalk between stress-responsive promoters (recA, katG). This work demonstrates the construction of genetic circuits that combine regulations of gene expression with metabolic pathways, for sensing and computing in living cells.
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Affiliation(s)
- Natalia Barger
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Phyana Litovco
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Ximing Li
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Mouna Habib
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Ramez Daniel
- Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
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15
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Hurtado-Gallego J, Redondo-López A, Leganés F, Rosal R, Fernández-Piñas F. Peroxiredoxin (2-cys-prx) and catalase (katA) cyanobacterial-based bioluminescent bioreporters to detect oxidative stress in the aquatic environment. CHEMOSPHERE 2019; 236:124395. [PMID: 31545198 DOI: 10.1016/j.chemosphere.2019.124395] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 06/10/2023]
Abstract
The detection of oxidative stress caused by emerging pollutants in aquatic systems is essential to carry out toxicological analysis since they can bring us information about the mechanisms of toxic action of the pollutants, which might be useful to address this contamination. To achieve this goal, two self-bioluminescent strains that respond to oxidative stress based on the filamentous cyanobacterium Nostoc sp. PCC7120, which has a high ecological relevance in aquatic continental systems, have been constructed. Nostoc sp. PCC7120 pBG2172 harbours the promoter region of the 2-cys-prx gene (P2-cys-prx), encoding a cytoplasmic peroxiredoxin, fused to luxCDABE genes of the bacterium Photorhabdus luminescens. Nostoc sp. PCC7120 pBG2173 harbours the promoter region of the KatA gene (PkatA), a cytoplasmic catalase, also fused to luxCDABE genes. Both strains have been characterized by exposing them to H2O2: Nostoc sp. PCC7120 pBG2172 responded while Nostoc sp. PCC7120 pBG2173 did not respond to this pollutant. In order to know their specificity, they were exposed to methyl viologen (MV), an herbicide that produces superoxide anion (O2-) and a bioluminescence response was observed in both strains. Besides, the utility of these strains for the detection of H2O2 and MV in natural water samples, both pristine and wastewater samples has been tested by spiking experiments. Finally, the possible application of these strains for the detection of the emerging pollutant triclosan has also been tested showing to be suitable bioreporters to study oxidative stress in aquatic environments.
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Affiliation(s)
- Jara Hurtado-Gallego
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28029, Madrid, Spain
| | - Arturo Redondo-López
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28029, Madrid, Spain
| | - Francisco Leganés
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28029, Madrid, Spain
| | - Roberto Rosal
- Departamento de Ingeniería Química, Universidad de Alcalá, 28871, Alcalá de Henares, Madrid, Spain
| | - Francisca Fernández-Piñas
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28029, Madrid, Spain.
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16
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Inda ME, Broset E, Lu TK, de la Fuente-Nunez C. Emerging Frontiers in Microbiome Engineering. Trends Immunol 2019; 40:952-973. [PMID: 31601521 DOI: 10.1016/j.it.2019.08.007] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Revised: 08/15/2019] [Accepted: 08/15/2019] [Indexed: 02/07/2023]
Abstract
The gut microbiome has a significant impact on health and disease and can actively contribute to obesity, diabetes, inflammatory bowel disease, cardiovascular disease, and neurological disorders. We do not yet have the necessary tools to fine-tune the microbial communities that constitute the microbiome, though such tools could unlock extensive benefits to human health. Here, we provide an overview of the current state of technological tools that may be used for microbiome engineering. These tools can enable investigators to define the parameters of a healthy microbiome and to determine how gut bacteria may contribute to the etiology of a variety of diseases. These tools may also allow us to explore the exciting prospect of developing targeted therapies and personalized treatments for microbiome-linked diseases.
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Affiliation(s)
- María Eugenia Inda
- Synthetic Biology Group, MIT Synthetic Biology Center, Department of Biological Engineering and Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Esther Broset
- Machine Biology Group, Departments of Psychiatry and Microbiology, Perelman School of Medicine, and Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA; Grupo de Genética de Micobacterias, Departamento de Microbiología y Medicina Preventiva, Facultad de Medicina, Universidad de Zaragoza, 50009, Spain
| | - Timothy K Lu
- Synthetic Biology Group, MIT Synthetic Biology Center, Department of Biological Engineering and Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| | - Cesar de la Fuente-Nunez
- Machine Biology Group, Departments of Psychiatry and Microbiology, Perelman School of Medicine, and Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA.
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17
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Gerchman Y, Cohen-Yaniv V, Betzalel Y, Yagur-Kroll S, Belkin S, Mamane H. The involvement of superoxide radicals in medium pressure UV derived inactivation. WATER RESEARCH 2019; 161:119-125. [PMID: 31181447 DOI: 10.1016/j.watres.2019.05.084] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 05/14/2019] [Accepted: 05/25/2019] [Indexed: 05/19/2023]
Abstract
Today, two types of lamp systems dominate the UV disinfection industry: low-pressure (LP) UV lamps and medium-pressure (MP) polychromatic lamps. Both lamp types have their advantages and disadvantages in microorganism inactivation, with LP lamps being cheaper, having longer life, and working at lower temperature, hence reducing fouling, and MP lamps showing better inactivation per germicidal dose for certain microorganisms. Bacterium-based biosensors were used to compare LP and MP irradiation. These biosensors were Escherichia coli bacteria carrying the lux operon genes under the control of different stress-responding promoters, where activation of the specific promoter is manifested as bioluminescence. MP irradiation, considerably more than LP irradiation, resulted in activation of the superoxide dismutase expression, indicating the formation of superoxide radicals inside the cells. Accordingly, pre-exposure (immunization) of the bacteria to an activator that produces superoxide radicals resulted in lower inactivation and increased resistance to MP irradiation, but not to LP irradiation. This study shows that the difference in germicidal efficiency may result from the production of intracellular superoxide radicals by MP irradiation, at wavelengths other than 254 nm, as emitted by LP lamps.
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Affiliation(s)
- Yoram Gerchman
- Department of Biology and Environment, Faculty of Natural Sciences, University of Haifa, Oranim, Tivon, 36006, Israel.
| | - Vered Cohen-Yaniv
- School of Mechanical Engineering, Faculty of Engineering and Water Research Center, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Yifaat Betzalel
- Department of Biology and Environment, Faculty of Natural Sciences, University of Haifa, Oranim, Tivon, 36006, Israel; School of Mechanical Engineering, Faculty of Engineering and Water Research Center, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Sharon Yagur-Kroll
- Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| | - Shimshon Belkin
- Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| | - Hadas Mamane
- School of Mechanical Engineering, Faculty of Engineering and Water Research Center, Tel Aviv University, Tel Aviv, 69978, Israel
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18
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Gene networks that compensate for crosstalk with crosstalk. Nat Commun 2019; 10:4028. [PMID: 31492904 PMCID: PMC6731275 DOI: 10.1038/s41467-019-12021-y] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Accepted: 08/12/2019] [Indexed: 12/18/2022] Open
Abstract
Crosstalk is a major challenge to engineering sophisticated synthetic gene networks. A common approach is to insulate signal-transduction pathways by minimizing molecular-level crosstalk between endogenous and synthetic genetic components, but this strategy can be difficult to apply in the context of complex, natural gene networks and unknown interactions. Here, we show that synthetic gene networks can be engineered to compensate for crosstalk by integrating pathway signals, rather than by pathway insulation. We demonstrate this principle using reactive oxygen species (ROS)-responsive gene circuits in Escherichia coli that exhibit concentration-dependent crosstalk with non-cognate ROS. We quantitatively map the degree of crosstalk and design gene circuits that introduce compensatory crosstalk at the gene network level. The resulting gene network exhibits reduced crosstalk in the sensing of the two different ROS. Our results suggest that simple network motifs that compensate for pathway crosstalk can be used by biological networks to accurately interpret environmental signals. Crosstalk between genetic circuits is a major challenge for engineering sophisticated networks. Here the authors design networks that compensate for crosstalk by integrating, not insulating, pathways.
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19
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Karatani H, Fuse Y, Mizuguchi H, Monji S, Oyama H, Waku T, Iwasaki M. Bioluminescence Microplate Assay of Cyanide with Escherichia coli Harboring a Plasmid Responsible for Cyanide-dependent Light Emission in Alginate Microenvironment. ANAL SCI 2019; 35:821-825. [PMID: 31105086 DOI: 10.2116/analsci.19n014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
We describe the bioluminescence of a genetically engineered Escherichia coli harboring a recombined plasmid with a catalase gene promoter fused lux gene cluster, responsible for the generation of photons closely associated with respiratory inhibition, with the aim of applying it for cyanide sensing. This E. coli construct was favorably utilized for the microplate assay of cyanide by leveraging the microenvironment of the biocompatible alginate. The brightness of the bioluminescence, induced by cyanide stimulation of the respiration causative of the production of hydrogen peroxide, positively correlates with its concentration. Moreover, visualization of cyanide with a consumer digital camera, ranging in concentration from about 0.01 mg CN·L-1 in the alginate sol to around 100 mg CN·L-1 in its gel, was attained.
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Affiliation(s)
- Hajime Karatani
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology.,Kyoto Luminous Science Laboratory.,Center of Environmental Science, Kyoto Institute of Technology
| | - Yasuro Fuse
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology.,Center of Environmental Science, Kyoto Institute of Technology
| | | | - Shogo Monji
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology
| | - Hiroshi Oyama
- Department of Life Science, Faculty of Science and Engineering, Setsunan University
| | - Tomonori Waku
- Faculty of Molecular Chemistry and Engineering, Kyoto Institute of Technology
| | - Masashi Iwasaki
- Center of Environmental Science, Kyoto Institute of Technology.,Faculty of Materials Science and Engineering, Kyoto Institute of Technology
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20
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Xie X, Chen C, Wang X, Li J, Naraginti S. Efficient detoxification of triclosan by a S-Ag/TiO 2@g-C 3N 4 hybrid photocatalyst: process optimization and bio-toxicity assessment. RSC Adv 2019; 9:20439-20449. [PMID: 35514706 DOI: 10.1039/c9ra03279grsc.li/rsc-advances] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 06/24/2019] [Indexed: 05/22/2023] Open
Abstract
Owing to their persistency and toxicity, development of an effective strategy to eliminate antibiotic residues from the aquatic system has become a major environmental concern. Doping TiO2 with hetero atoms and forming a hybrid structure with g-C3N4 could serve as an efficient visible light active photocatalytic candidate. In this study, a novel S-Ag/TiO2@g-C3N4 hybrid catalyst was prepared for visible light degradation and detoxification of triclosan (TS) antibiotic. The effect of various operational parameters towards the photocatalytic degradation was systematically evaluated through response surface methodology (RSM) based on central composite design (CCD). The highest TS degradation (92.3%) was observed under optimal conditions (TS concentration = 10 mg L-1, pH = 7.8, and catalyst weight = 0.20 g L-1) after 60 min. Efficient charge separation resulted from the doped nanoparticles (silver and sulphur), the existing integrated electric field of the heterojunction and the overlying light response of hybridized TiO2 and g-C3N4, thus the S-Ag/TiO2@g-C3N4 composite showed impressively higher activity. The main degradation products of TS were identified by LC/ESI-MS analysis. In addition, the toxicity of the degradation products was investigated through an Escherichia coli (E. coli) colony forming unit assay and the results revealed that under optimal conditions a significant reduction in biotoxicity was noticed.
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Affiliation(s)
- Xiangfeng Xie
- Jiangsu Academy of Environmental Industry and Technology Corp. Nanjing 210036 China
- School of Energy and Environment, Key Laboratory of Environmental Medicine Engineering of the Ministry of Education, Southeast University Nanjing 210096 China
| | - Chen Chen
- Jiangsu Academy of Environmental Industry and Technology Corp. Nanjing 210036 China
| | - Xiaoxiang Wang
- Jiangsu Academy of Environmental Industry and Technology Corp. Nanjing 210036 China
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, College of Environment, Hohai University Nanjing 210098 China
| | - Jie Li
- Jiangsu Academy of Environmental Industry and Technology Corp. Nanjing 210036 China
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, College of Environment, Hohai University Nanjing 210098 China
| | - Saraschandra Naraginti
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, College of Environment, Hohai University Nanjing 210098 China
- Biofuels Institute, School of the Environment, Jiangsu University 301 Xuefu Road Zhenjiang 212013 China
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21
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Prescreening of Natural Products in Drug Discovery Using Recombinant Bioluminescent Bacteria. BIOTECHNOL BIOPROC E 2019. [DOI: 10.1007/s12257-018-0384-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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22
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Xie X, Chen C, Wang X, Li J, Naraginti S. Efficient detoxification of triclosan by a S–Ag/TiO2@g-C3N4hybrid photocatalyst: process optimization and bio-toxicity assessment. RSC Adv 2019; 9:20439-20449. [PMID: 35514706 PMCID: PMC9065728 DOI: 10.1039/c9ra03279g] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 06/24/2019] [Indexed: 11/21/2022] Open
Abstract
Owing to their persistency and toxicity, development of an effective strategy to eliminate antibiotic residues from the aquatic system has become a major environmental concern. Doping TiO2 with hetero atoms and forming a hybrid structure with g-C3N4 could serve as an efficient visible light active photocatalytic candidate. In this study, a novel S–Ag/TiO2@g-C3N4 hybrid catalyst was prepared for visible light degradation and detoxification of triclosan (TS) antibiotic. The effect of various operational parameters towards the photocatalytic degradation was systematically evaluated through response surface methodology (RSM) based on central composite design (CCD). The highest TS degradation (92.3%) was observed under optimal conditions (TS concentration = 10 mg L−1, pH = 7.8, and catalyst weight = 0.20 g L−1) after 60 min. Efficient charge separation resulted from the doped nanoparticles (silver and sulphur), the existing integrated electric field of the heterojunction and the overlying light response of hybridized TiO2 and g-C3N4, thus the S–Ag/TiO2@g-C3N4 composite showed impressively higher activity. The main degradation products of TS were identified by LC/ESI-MS analysis. In addition, the toxicity of the degradation products was investigated through an Escherichia coli (E. coli) colony forming unit assay and the results revealed that under optimal conditions a significant reduction in biotoxicity was noticed. Owing to their persistency and toxicity, development of an effective strategy to eliminate antibiotic residues from the aquatic system has become a major environmental concern.![]()
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Affiliation(s)
- Xiangfeng Xie
- Jiangsu Academy of Environmental Industry and Technology Corp
- Nanjing 210036
- China
- School of Energy and Environment
- Key Laboratory of Environmental Medicine Engineering of the Ministry of Education
| | - Chen Chen
- Jiangsu Academy of Environmental Industry and Technology Corp
- Nanjing 210036
- China
| | - Xiaoxiang Wang
- Jiangsu Academy of Environmental Industry and Technology Corp
- Nanjing 210036
- China
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes
- College of Environment
| | - Jie Li
- Jiangsu Academy of Environmental Industry and Technology Corp
- Nanjing 210036
- China
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes
- College of Environment
| | - Saraschandra Naraginti
- Ministry of Education Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes
- College of Environment
- Hohai University
- Nanjing 210098
- China
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23
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Horinouchi T, Maeda T, Furusawa C. Understanding and engineering alcohol-tolerant bacteria using OMICS technology. World J Microbiol Biotechnol 2018; 34:157. [PMID: 30341456 PMCID: PMC6208762 DOI: 10.1007/s11274-018-2542-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 10/13/2018] [Indexed: 12/16/2022]
Abstract
Microbes are capable of producing alcohols, making them an important source of alternative energy that can replace fossil fuels. However, these alcohols can be toxic to the microbes themselves, retaring or inhibiting cell growth and decreasing the production yield. One solution is improving the alcohol tolerance of such alcohol-producing organisms. Advances in omics technologies, including transcriptomic, proteomic, metabolomic, and genomic technologies, have helped us understand the complex mechanisms underlying alcohol toxicity, and such advances could assist in devising strategies for engineering alcohol-tolerant strains. This review highlights these advances and discusses strategies for improving alcohol tolerance using omics analyses.
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Affiliation(s)
- Takaaki Horinouchi
- Center for Biosystems Dynamics Research (BDR), RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan.
| | - Tomoya Maeda
- Center for Biosystems Dynamics Research (BDR), RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan
| | - Chikara Furusawa
- Center for Biosystems Dynamics Research (BDR), RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan.
- Universal Biology Institute, The University of Tokyo, 7-3-1 Hongo, Tokyo, 113-0033, Japan.
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24
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Measuring Artificial Sweeteners Toxicity Using a Bioluminescent Bacterial Panel. Molecules 2018; 23:molecules23102454. [PMID: 30257473 PMCID: PMC6222326 DOI: 10.3390/molecules23102454] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Revised: 09/21/2018] [Accepted: 09/22/2018] [Indexed: 12/16/2022] Open
Abstract
Artificial sweeteners have become increasingly controversial due to their questionable influence on consumers' health. They are introduced in most foods and many consume this added ingredient without their knowledge. Currently, there is still no consensus regarding the health consequences of artificial sweeteners intake as they have not been fully investigated. Consumption of artificial sweeteners has been linked with adverse effects such as cancer, weight gain, metabolic disorders, type-2 diabetes and alteration of gut microbiota activity. Moreover, artificial sweeteners have been identified as emerging environmental pollutants, and can be found in receiving waters, i.e., surface waters, groundwater aquifers and drinking waters. In this study, the relative toxicity of six FDA-approved artificial sweeteners (aspartame, sucralose, saccharine, neotame, advantame and acesulfame potassium-k (ace-k)) and that of ten sport supplements containing these artificial sweeteners, were tested using genetically modified bioluminescent bacteria from E. coli. The bioluminescent bacteria, which luminesce when they detect toxicants, act as a sensing model representative of the complex microbial system. Both induced luminescent signals and bacterial growth were measured. Toxic effects were found when the bacteria were exposed to certain concentrations of the artificial sweeteners. In the bioluminescence activity assay, two toxicity response patterns were observed, namely, the induction and inhibition of the bioluminescent signal. An inhibition response pattern may be observed in the response of sucralose in all the tested strains: TV1061 (MLIC = 1 mg/mL), DPD2544 (MLIC = 50 mg/mL) and DPD2794 (MLIC = 100 mg/mL). It is also observed in neotame in the DPD2544 (MLIC = 2 mg/mL) strain. On the other hand, the induction response pattern may be observed in its response in saccharin in TV1061 (MLIndC = 5 mg/mL) and DPD2794 (MLIndC = 5 mg/mL) strains, aspartame in DPD2794 (MLIndC = 4 mg/mL) strain, and ace-k in DPD2794 (MLIndC = 10 mg/mL) strain. The results of this study may help in understanding the relative toxicity of artificial sweeteners on E. coli, a sensing model representative of the gut bacteria. Furthermore, the tested bioluminescent bacterial panel can potentially be used for detecting artificial sweeteners in the environment, using a specific mode-of-action pattern.
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25
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Hurtado-Gallego J, Martín-Betancor K, Rodea-Palomares I, Leganés F, Rosal R, Fernández-Piñas F. Two novel cyanobacterial bioluminescent whole-cell bioreporters based on superoxide dismutases MnSod and FeSod to detect superoxide anion. CHEMOSPHERE 2018; 201:772-779. [PMID: 29550571 DOI: 10.1016/j.chemosphere.2018.03.012] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Revised: 02/13/2018] [Accepted: 03/03/2018] [Indexed: 06/08/2023]
Abstract
This work describes the construction of two novel self-luminescent bioreporter strains of the cyanobacterium Nostoc sp. PCC 7120 by fusing the promoter region of the sodA and sodB genes (encoding the superoxide dismutases MnSod and FeSod, respectively) to luxCDABE from Photorhabdus luminescens aimed at detecting pollutants that generate reactive oxygen species (ROS), particularly O2-. Bioreporters were tested against methyl viologen (MV) as the inducer of superoxide anion (O2-). Both bioreporters were specific for O2- and Limits of detection (LODs) and Maximum Permissive Concentrations (MPCs) were calculated: Nostoc sp. PCC 7120 pBG2154 (sodA) had a range of detection from 400 to 1000 pM of MV and for Nostoc sp. PCC 7120 pBG2165 (sodB) the range of detection was from 500 to 1800 pM of MV after 5 h-exposure. To further validate the bioreporters, they were tested with the emerging pollutant Triclosan which induced bioluminescence in both strains. Furthermore, the bioreporters performance was tested in two real environmental samples with different water matrix complexity, spiked with MV. Both bioreporters were induced by O2- in these environmental samples. In the case of the river water sample, the amount of bioavailable MV as calculated from the bioreporters output was similar to that nominally added. For the waste water sample, the bioavailable MV concentration detected by the bioreporters was one order of magnitude lower than nominal. These differences could be due to MV complexation with organic matter and/or co-occurring organic contaminants. These results confirm their high sensitivity to O2- and their suitability to detect oxidative stress-generating pollutants in fresh-waters.
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Affiliation(s)
- J Hurtado-Gallego
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - K Martín-Betancor
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - I Rodea-Palomares
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - F Leganés
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - R Rosal
- Departamento de Ingeniería Química, Universidad de Alcalá, E-28871 Alcalá de Henares, Madrid, Spain
| | - F Fernández-Piñas
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
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26
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Ur Rahman S, Stanton M, Casey PG, Spagnuolo A, Bensi G, Hill C, Francis KP, Tangney M, Gahan CGM. Development of a Click Beetle Luciferase Reporter System for Enhanced Bioluminescence Imaging of Listeria monocytogenes: Analysis in Cell Culture and Murine Infection Models. Front Microbiol 2017; 8:1797. [PMID: 29018414 PMCID: PMC5622934 DOI: 10.3389/fmicb.2017.01797] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Accepted: 09/05/2017] [Indexed: 01/22/2023] Open
Abstract
Listeria monocytogenes is a Gram-positive facultative intracellular pathogen that is widely used as a model organism for the analysis of infection biology. In this context, there is a current need to develop improved reporters for enhanced bioluminescence imaging (BLI) of the pathogen in infection models. We have developed a click beetle red luciferase (CBR-luc) based vector (pPL2CBRopt) expressing codon optimized CBR-luc under the control of a highly expressed Listerial promoter (PHELP) for L. monocytogenes and have compared this to a lux-based system expressing bacterial luciferase for BLI of the pathogen using in vitro growth experiments and in vivo models. The CBR-luc plasmid stably integrates into the L. monocytogenes chromosome and can be used to label field isolates and laboratory strains of the pathogen. Growth experiments revealed that CBR-luc labeled L. monocytogenes emits a bright signal in exponential phase that is maintained during stationary phase. In contrast, lux-labeled bacteria produced a light signal that peaked during exponential phase and was significantly reduced during stationary phase. Light from CBR-luc labeled bacteria was more efficient than the signal from lux-labeled bacteria in penetrating an artificial tissue depth assay system. A cell invasion assay using C2Bbe1 cells and a systemic murine infection model revealed that CBR-luc is suited to BLI approaches and demonstrated enhanced sensitivity relative to lux in the context of Listeria infection models. Overall, we demonstrate that this novel CBR reporter system provides efficient, red-shifted light production relative to lux and may have significant applications in the analysis of L. monocytogenes pathogenesis.
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Affiliation(s)
- Sadeeq Ur Rahman
- APC Microbiome Institute, University College Cork, Cork, Ireland.,School of Microbiology, University College Cork, Cork, Ireland.,College of Veterinary Sciences and Animal Husbandry, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Michael Stanton
- Cork Cancer Research Centre, University College Cork, Cork, Ireland
| | - Pat G Casey
- APC Microbiome Institute, University College Cork, Cork, Ireland
| | | | | | - Colin Hill
- APC Microbiome Institute, University College Cork, Cork, Ireland.,School of Microbiology, University College Cork, Cork, Ireland
| | | | - Mark Tangney
- APC Microbiome Institute, University College Cork, Cork, Ireland.,Cork Cancer Research Centre, University College Cork, Cork, Ireland.,SynBio Centre, University College Cork, Cork, Ireland
| | - Cormac G M Gahan
- APC Microbiome Institute, University College Cork, Cork, Ireland.,School of Microbiology, University College Cork, Cork, Ireland.,SynBio Centre, University College Cork, Cork, Ireland.,School of Pharmacy, University College Cork, Cork, Ireland
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27
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Mabekou SS, Lee SC, Dinh TH, Won K, Mitchell RJ. Enhanced sensitivity and responses to viologens from a whole-cell bacterial bioreporter treated with branched polyethyleneimines. J Appl Microbiol 2017; 123:1478-1487. [PMID: 28944557 DOI: 10.1111/jam.13592] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 09/14/2017] [Accepted: 09/17/2017] [Indexed: 12/13/2022]
Abstract
AIMS Evaluate the use of polyethyleneimines (PEIs) as membrane permeabilizers to improve the responses and sensitivity of a bacterial bioreporter strain to viologens. METHODS AND RESULTS The responses from E. coli str. EBS, i.e., E. coli BW25113 carrying plasmid pSDS, when exposed to five different viologens were characterized, as were the toxicities of seven different PEIS, including two linear and five branched species. Based on these results, benzyl viologen led to the greatest responses, and 0·8-kDa branched PEI (BPEI) was the least toxic of the PEIs tested and, therefore, both were selected for the subsequent tests. The bioluminescence and relative responses from E. coli str. EBS exposed to various concentrations of 0·8 kDa BPEI identified 400 mg l-1 as the optimal concentration. Using this concentration, tests were performed with all five of the viologens. CONCLUSIONS The responses from E. coli str. EBS to the viologens were improved, with the maximum relative bioluminescence values increasing between 5·6 and 16·5-fold. The minimum detectable levels for four of the viologens were likewise improved 2- to 4-fold. SIGNIFICANCE AND IMPACT OF STUDY Improving bacterial membrane permeability in a controlled manner using BPEIs can improve biosensing of toxic compounds, as well as be used in biofuel and bioenergy applications where membrane permeability to a solute is important.
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Affiliation(s)
- S S Mabekou
- School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Korea
| | - S C Lee
- Department of Chemical and Biochemical Engineering, Dongguk University-Seoul, Seoul, Korea
| | - T H Dinh
- Department of Chemical and Biochemical Engineering, Dongguk University-Seoul, Seoul, Korea
| | - K Won
- Department of Chemical and Biochemical Engineering, Dongguk University-Seoul, Seoul, Korea
| | - R J Mitchell
- School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Korea
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28
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Goers L, Ainsworth C, Goey CH, Kontoravdi C, Freemont PS, Polizzi KM. Whole-cell Escherichia coli lactate biosensor for monitoring mammalian cell cultures during biopharmaceutical production. Biotechnol Bioeng 2017; 114:1290-1300. [PMID: 28112405 PMCID: PMC5412874 DOI: 10.1002/bit.26254] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Revised: 01/11/2017] [Accepted: 01/19/2017] [Indexed: 02/06/2023]
Abstract
Many high-value added recombinant proteins, such as therapeutic glycoproteins, are produced using mammalian cell cultures. In order to optimize the productivity of these cultures it is important to monitor cellular metabolism, for example the utilization of nutrients and the accumulation of metabolic waste products. One metabolic waste product of interest is lactic acid (lactate), overaccumulation of which can decrease cellular growth and protein production. Current methods for the detection of lactate are limited in terms of cost, sensitivity, and robustness. Therefore, we developed a whole-cell Escherichia coli lactate biosensor based on the lldPRD operon and successfully used it to monitor lactate concentration in mammalian cell cultures. Using real samples and analytical validation we demonstrate that our biosensor can be used for absolute quantification of metabolites in complex samples with high accuracy, sensitivity, and robustness. Importantly, our whole-cell biosensor was able to detect lactate at concentrations more than two orders of magnitude lower than the industry standard method, making it useful for monitoring lactate concentrations in early phase culture. Given the importance of lactate in a variety of both industrial and clinical contexts we anticipate that our whole-cell biosensor can be used to address a range of interesting biological questions. It also serves as a blueprint for how to capitalize on the wealth of genetic operons for metabolite sensing available in nature for the development of other whole-cell biosensors. Biotechnol. Bioeng. 2017;114: 1290-1300. © 2017 The Authors. Biotechnology and Bioengineering Published by Wiley Periodicals, Inc.
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Affiliation(s)
- Lisa Goers
- Department of Life SciencesImperial College LondonLondonSW7 2AZUK
- Centre for Synthetic Biology and InnovationImperial College LondonLondonUK
| | - Catherine Ainsworth
- Centre for Synthetic Biology and InnovationImperial College LondonLondonUK
- Department of BioengineeringImperial College LondonLondonUK
| | - Cher Hui Goey
- Department of Chemical EngineeringImperial College LondonLondonUK
| | - Cleo Kontoravdi
- Centre for Synthetic Biology and InnovationImperial College LondonLondonUK
- Department of Chemical EngineeringImperial College LondonLondonUK
| | - Paul S. Freemont
- Centre for Synthetic Biology and InnovationImperial College LondonLondonUK
- Department of MedicineImperial College LondonLondonUK
| | - Karen M. Polizzi
- Department of Life SciencesImperial College LondonLondonSW7 2AZUK
- Centre for Synthetic Biology and InnovationImperial College LondonLondonUK
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29
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Bazin I, Seo HB, Suehs CM, Ramuz M, De Waard M, Gu MB. Profiling the biological effects of wastewater samples via bioluminescent bacterial biosensors combined with estrogenic assays. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:33-41. [PMID: 26884239 DOI: 10.1007/s11356-016-6050-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Accepted: 01/04/2016] [Indexed: 06/05/2023]
Abstract
Various water samples were successfully evaluated using a panel of different recombinant bioluminescent bacteria and estrogenic activity analysis. The bioluminescent bacteria strains induced by oxidative (superoxide radical or hydroxyl radical), protein damage, cell membrane damage, or cellular toxicity were used. Estrogenic activities were examined by using the yeast strain BY4741, which carries the β-galactosidase reporter gene under the control of the estrogen-responsive element (ERE). A total of 14 samples from three wastewater treatment plants, one textile factory, and seawater locations in Tunisia were analyzed. A wide range of bio-responses were described. Site/sample heterogeneity was prevalent, in combination with generally high relative bioluminescence scores for oxidative stress (OH•). Estrogenic activity was detected at all sites and was particularly elevated at certain sites. Our perspectives include the future exploration of the variation detected in relation to treatment plant operations and environmental impacts. In conclusion, this new multi-experimental method can be used for rapid bio-response profile monitoring and the evaluation of environmental samples spanning a wide range of domains. This study confirms that bio-reactive wastewater treatment plant (WWTP) effluents are discharged into seawater, where they may impact coastal populations.
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Affiliation(s)
- Ingrid Bazin
- Ecole des mines d'Alès, LGEI, 6 avenue de Clavieres, 303198, Alès cedex, France.
| | - Ho Bin Seo
- Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Anam-dong, Seongbuk-gu, Seoul, 136-713, Republic of Korea
| | - Carey M Suehs
- Department of Biostatistics, Clinical Epidemiology, Public Health and Medical Information, Centre Hospitalier Universitaire de Nîmes, Place du Professeur Debré, 30029, Nîmes Cedex 09, France
| | - Marc Ramuz
- Department of Flexible Electronics, Ecole Nationale Supérieure des Mines de St Etienne, Campus G. Charpak Provence, 880, route de Mimet, 13541, Gardanne, France
| | - Michel De Waard
- INSERM U836, Grenoble Institute of Neuroscience, LabEx Ion Channel, Science and Therapeutics, Grenoble, France
- Université Joseph Fourier, Grenoble, France
| | - Man Bock Gu
- Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Anam-dong, Seongbuk-gu, Seoul, 136-713, Republic of Korea.
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30
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Karimov IF, Deryabin DG, Karimova DN, Subbotina TY, Manukhov IV. Evaluation of Oxidative Metabolism in Leukocytes during Phagocytosis of Escherichia coli Carrying Genetic Constructs soxS::lux or katG::lux. Bull Exp Biol Med 2016; 161:276-80. [PMID: 27402132 DOI: 10.1007/s10517-016-3394-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Indexed: 12/01/2022]
Abstract
We studied ROS generation by human peripheral blood monocytes and granulocytes during phagocytosis of Escherichia coli soxS::lux or katG::lux responding by luminescence (bioluminescence) to the development of oxidative stress. Initially high sensitivity of the bioluminescent reaction of E. coli katG::lux strain to the effects of model ROS (KO2 and H2O2) and pronounced induction of luminescence upon contact with granulocytes, whereas E. coli soxS::lux demonstrated less pronounced reaction to chemical oxidants and bioluminescence was observed primarily upon contact with monocytes. A correlation was found between quantitative characteristics of E. coli katG::lux bioluminescence and luminol-dependent chemiluminescence of leukocytes in some patients, but no dependence of this kind was noted for E. coli soxS::lux. The results can provide experimental substantiation of a new approach for evaluation of ROS production by leukocytes during phagocytosis and choosing the optimal object for these studies.
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Affiliation(s)
| | - D G Deryabin
- State Research Center of Dermatology and Cosmetology, Ministry of Health of the Russian Federation, Moscow, Russia.
| | | | | | - I V Manukhov
- State Research Institute of Genetics, Moscow, Russia
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31
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Kang Y, Lee J, Kim J, Oh Y, Kim D, Lee J, Lim S, Jo K. Analysis of alcohol-induced DNA damage in Escherichia coli by visualizing single genomic DNA molecules. Analyst 2016; 141:4326-31. [PMID: 27186604 DOI: 10.1039/c6an00616g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Consumption of alcohol injures DNA, and such damage is considered to be a primary cause for the development of cancer and many other diseases essentially due to reactive oxygen species generated from alcohol. To sensitively detect alcohol-induced DNA lesions in a biological system, we introduced a novel analytical platform for visualization of single genomic DNA molecules using E. coli. By fluorescently labelling the DNA lesions, our approach demonstrated, with the highest sensitivity, that we could count the number of DNA lesions induced by alcohol metabolism in a single bacterial cell. Moreover, our results showed a linear relationship between ethanol concentration and the number of DNA lesions: 0.88 lesions per 1% ethanol. Using this approach, we quantitatively analysed the DNA damage induced by exposure to alcoholic beverages such as beer (5% ethanol), rice wine (13%), soju (20%), and whisky (40%).
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Affiliation(s)
- Yujin Kang
- Department of Chemistry and Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul 121-742, Korea.
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32
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Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG′::lux. J Microbiol Methods 2015; 118:78-80. [DOI: 10.1016/j.mimet.2015.08.018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2015] [Revised: 08/19/2015] [Accepted: 08/24/2015] [Indexed: 11/21/2022]
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33
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Cell damage detection using Escherichia coli reporter plasmids: fluorescent and colorimetric assays. Arch Microbiol 2015; 197:815-21. [DOI: 10.1007/s00203-015-1119-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Revised: 12/21/2014] [Accepted: 05/07/2015] [Indexed: 10/23/2022]
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34
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Tsai HF, Tsai YC, Yagur-Kroll S, Palevsky N, Belkin S, Cheng JY. Water pollutant monitoring by a whole cell array through lens-free detection on CCD. LAB ON A CHIP 2015; 15:1472-1480. [PMID: 25608666 DOI: 10.1039/c4lc01189a] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Environmental contamination has become a serious problem to human and environmental health, as exposure to a wide range of possible contaminants continuously increases due to industrial and agricultural activities. Whole cell sensors have been proposed as a powerful tool to detect class-specific toxicants based upon their biological activity and bioavailability. We demonstrated a robust toxicant detection platform based on a bioluminescence whole cell sensor array biochip (LumiChip). LumiChip harbors an integrated temperature control and a 16-member sensor array, as well as a simple but highly efficient luminescence collection setup. On LumiChip, samples were infused in an oxygen-permeable microfluidic flow channel to reach the sensor array. Time-lapse changes in bioluminescence emitted by the array members were measured on a single window-removed linear charge-coupled device (CCD) commonly used in commercial industrial process control or in barcode readers. Removal of the protective window on the linear CCD allowed lens-free direct interfacing of LumiChip to the CCD surface for measurement with high light collection efficiency. Bioluminescence induced by simulated contamination events was detected within 15 to 45 minutes. The portable LumiSense system utilizing the linear CCD in combination with the miniaturized LumiChip is a promising potential platform for on-site environmental monitoring of toxicant contamination.
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Affiliation(s)
- Hsieh-Fu Tsai
- Research Center for Applied Sciences, Academia Sinica, Taipei 11529, Taiwan.
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35
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Chugunova E, Boga C, Sazykin I, Cino S, Micheletti G, Mazzanti A, Sazykina M, Burilov A, Khmelevtsova L, Kostina N. Synthesis and antimicrobial activity of novel structural hybrids of benzofuroxan and benzothiazole derivatives. Eur J Med Chem 2015; 93:349-59. [PMID: 25707015 DOI: 10.1016/j.ejmech.2015.02.023] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2014] [Revised: 02/12/2015] [Accepted: 02/15/2015] [Indexed: 11/16/2022]
Abstract
New compounds containing both benzofuroxan and benzothiazole scaffolds were synthesized through electrophile/nucleophile combination of nitrobenzofuroxan derivatives and 2-mercapto- or 2-aminobenzothiazole derivatives and their biological effect on the natural strain Vibrio genus and different bacterial lux-biosensors was studied. Among all the compounds synthesized, that obtained from 2-mercaptobenzothiazole and 7-chloro-4,6-dinitrobenzofuroxan was toxic for bacterial cells, and also able to activated the 1st type Quorum Sensing system. The reaction between 7-chloro-4,6-dinitrobenzofuroxan and 2-aminobenzothiazole derivatives gave two products, one bearing the benzofuroxan moiety linked to the exocyclic amino nitrogen, and the second derived from the attack of two molecules of electrophile to both the nitrogen atoms of the benzothiazole reagent. Their relative ratio is modifiable by tuning the reagents ratio and the reaction time.
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Affiliation(s)
- Elena Chugunova
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center, Russian Academy of Sciences, Akad. Arbuzov st. 8, Kazan, Tatarstan 420088 Russia.
| | - Carla Boga
- Department of Industrial Chemistry "Toso Montanari", Alma Mater Studiorum-University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy.
| | - Ivan Sazykin
- The Research Institute of Biology, Southern Federal University (SFedU), 194/1 Stachki Ave., 344090 Rostov-on-Don, Russia
| | - Silvia Cino
- Department of Industrial Chemistry "Toso Montanari", Alma Mater Studiorum-University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Gabriele Micheletti
- Department of Industrial Chemistry "Toso Montanari", Alma Mater Studiorum-University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Andrea Mazzanti
- Department of Industrial Chemistry "Toso Montanari", Alma Mater Studiorum-University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Marina Sazykina
- The Research Institute of Biology, Southern Federal University (SFedU), 194/1 Stachki Ave., 344090 Rostov-on-Don, Russia
| | - Alexander Burilov
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center, Russian Academy of Sciences, Akad. Arbuzov st. 8, Kazan, Tatarstan 420088 Russia
| | - Ludmila Khmelevtsova
- The Research Institute of Biology, Southern Federal University (SFedU), 194/1 Stachki Ave., 344090 Rostov-on-Don, Russia
| | - Natalia Kostina
- The Research Institute of Biology, Southern Federal University (SFedU), 194/1 Stachki Ave., 344090 Rostov-on-Don, Russia
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36
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Hynninen A, Virta M. Whole-cell bioreporters for the detection of bioavailable metals. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2014; 118:31-63. [PMID: 19543702 DOI: 10.1007/10_2009_9] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/21/2023]
Abstract
Whole-cell bioreporters are living microorganisms that produce a specific, quantifiable output in response to target chemicals. Typically, whole-cell bioreporters combine a sensor element for the substance of interest and a reporter element coding for an easily detectable protein. The sensor element is responsible for recognizing the presence of an analyte. In the case of metal bioreporters, the sensor element consists of a DNA promoter region for a metal-binding transcription factor fused to a promoterless reporter gene that encodes a signal-producing protein. In this review, we provide an overview of specific whole-cell bioreporters for heavy metals. Because the sensing of metals by bioreporter microorganisms is usually based on heavy metal resistance/homeostasis mechanisms, the basis of these mechanisms will also be discussed. The goal here is not to present a comprehensive summary of individual metal-specific bioreporters that have been constructed, but rather to express views on the theory and applications of metal-specific bioreporters and identify some directions for future research and development.
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Affiliation(s)
- Anu Hynninen
- Department of Applied Chemistry and Microbiology, University of Helsinki, 56, 00014, Helsinki, Finland
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37
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Date A, Pasini P, Daunert S. Fluorescent and bioluminescent cell-based sensors: strategies for their preservation. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2014; 117:57-75. [PMID: 20091290 DOI: 10.1007/10_2009_22] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
Luminescent whole-cell biosensing systems have been developed for a variety of analytes of environmental, clinical, and biological interest. These analytical tools allow for sensitive, rapid, simple, and inexpensive quantitative detection of target analytes. Furthermore, they can be designed to be nonspecific, semispecific, or highly specific/selective. A notable feature of such sensing systems employing living cells is that they provide information on the analyte bioavailability and activity. These characteristics, along with their suitability to miniaturization, make cell-based sensors ideal for field applications. However, a major limitation to on-site use is their "shelf-life." To address this problem, various methods for preservation of sensing cells have been reported, including freeze-drying, immobilization in different types of matrices, and formation of spores. Among these, the use of spores emerged as a promising strategy for long-term storage of whole-cell sensing systems at room temperature as well as in extreme environmental conditions.
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Affiliation(s)
- Amol Date
- Department of Chemistry, University of Kentucky, Lexington, KY, 40506-0055, USA
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38
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Jung I, Seo HB, Lee JE, Chan Kim B, Gu MB. A dip-stick type biosensor using bioluminescent bacteria encapsulated in color-coded alginate microbeads for detection of water toxicity. Analyst 2014; 139:4696-701. [DOI: 10.1039/c4an00308j] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The use of genetically engineered bioluminescent bacteria, in which bioluminescence is induced by different modes of toxic action, represents an alternative to acute toxicity tests using living aquatic organisms (plants, vertebrates, or invertebrates) in an aqueous environment.
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Affiliation(s)
- Insup Jung
- School of Life Sciences and Biotechnology
- Korea University
- Seoul, 136-701, Republic of Korea
| | - Ho Bin Seo
- School of Life Sciences and Biotechnology
- Korea University
- Seoul, 136-701, Republic of Korea
| | - Ji-eun Lee
- School of Life Sciences and Biotechnology
- Korea University
- Seoul, 136-701, Republic of Korea
| | - Byoung Chan Kim
- Center for Environment, Health and Welfare Research
- Korea Institute of Science and Technology (KIST)
- Department of Energy and Environmental Engineering
- Korea University of Science and Technology (UST)
- Seoul 136-791, Republic of Korea
| | - Man Bock Gu
- School of Life Sciences and Biotechnology
- Korea University
- Seoul, 136-701, Republic of Korea
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39
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Serum complement enhances the responses of genotoxin- and oxidative stress-sensitive Escherichia coli bioreporters. Biosens Bioelectron 2013; 46:175-82. [PMID: 23545153 DOI: 10.1016/j.bios.2013.02.038] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2012] [Revised: 12/27/2012] [Accepted: 02/19/2013] [Indexed: 11/21/2022]
Abstract
Bacterial bioreporters are limited in their abilities to detect large polar molecules due to their membrane selectivity. In this study, the activity of serum complement was used to bypass this undesired selectivity. Initially, the serum complement activity was assessed using the responses of a bacterial bioreporter harboring a recA::luxCDABE transcriptional fusion when exposed to the chemotherapy drug, mitomycin C (MMC). Using 50 °C-treated serum, the limit of detection for this bacterial sensor was lowered by nearly 450-fold, from 31 μg/L to 0.07 μg/L MMC. Real-time quantitative PCR demonstrated that serum-treated cultures responded more strongly to 100 μg/L MMC, with 3.1-fold higher recA expression levels. Subsequent experiments with other bioreporter strains also found enhanced sensitivities and responses. Finally, combining each of the above findings, tests were performed to demonstrate the potential application of the recA::luxCDABE bioreporter within a lab-on-a-CD platform as a point-of-care diagnostic to measure chemotherapeutic drug concentrations within blood.
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40
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Xu T, Close DM, Sayler GS, Ripp S. Genetically modified whole-cell bioreporters for environmental assessment. ECOLOGICAL INDICATORS 2013; 28:125-141. [PMID: 26594130 PMCID: PMC4649933 DOI: 10.1016/j.ecolind.2012.01.020] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Living whole-cell bioreporters serve as environmental biosentinels that survey their ecosystems for harmful pollutants and chemical toxicants, and in the process act as human and other higher animal proxies to pre-alert for unfavorable, damaging, or toxic conditions. Endowed with bioluminescent, fluorescent, or colorimetric signaling elements, bioreporters can provide a fast, easily measured link to chemical contaminant presence, bioavailability, and toxicity relative to a living system. Though well tested in the confines of the laboratory, real-world applications of bioreporters are limited. In this review, we will consider bioreporter technologies that have evolved from the laboratory towards true environmental applications, and discuss their merits as well as crucial advancements that still require adoption for more widespread utilization. Although the vast majority of environmental monitoring strategies rely upon bioreporters constructed from bacteria, we will also examine environmental biosensing through the use of less conventional eukaryotic-based bioreporters, whose chemical signaling capacity facilitates a more human-relevant link to toxicity and health-related consequences.
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Affiliation(s)
- Tingting Xu
- The University of Tennessee Center for Environmental Biotechnology, 676 Dabney Hall, Knoxville, TN 37996, USA
| | - Dan M. Close
- The Joint Institute for Biological Sciences, Oak Ridge National Laboratory, PO Box 2008, MS6342 Oak Ridge, TN 37831, USA
| | - Gary S. Sayler
- The University of Tennessee Center for Environmental Biotechnology, 676 Dabney Hall, Knoxville, TN 37996, USA
- The Joint Institute for Biological Sciences, Oak Ridge National Laboratory, PO Box 2008, MS6342 Oak Ridge, TN 37831, USA
| | - Steven Ripp
- The University of Tennessee Center for Environmental Biotechnology, 676 Dabney Hall, Knoxville, TN 37996, USA
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Makarovsky I, Lellouche J, Lellouche JP, Banin E. Improved triclosan delivery by a novel silica-based nanocomposite. Adv Healthc Mater 2013. [PMID: 23184708 DOI: 10.1002/adhm.201200275] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
In this study, we report on the design, synthesis, and full characterization of a covalently-linked, triclosan silica-based nanoparticles (T-SNPs), coated with a polyaminated shell (NH2 -T-SNPs). Various techniques are used to elucidate and rationalize the potential biological mechanism of action of these novel nanoparticles. NH2 -T-SNPs are found to be potently bactericidal with no detectable lag time for the antimicrobial activity against E. coli and S. aureus. In this context, we also prove that triclosan is the chemical agent that mediated the bactericidal activity of these chemically-modified NPs. The obtained experimental data allows us to pinpoint the actual minimal bactericidal concentrations (MBCs) of triclosan-bound NPs by quantifying intracellular triclosan concentrations. Furthermore, we conduct preliminary cytotoxicity studies, which show that triclosan bound NPs are less cytotoxic (2000 fold) in vitro compared to free-triclosan when tested with various human and mammalian cell lines. Taken together, our results further support the characterization and development of these new nanoscale materials for various biomedical applications.
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Affiliation(s)
- Igor Makarovsky
- Department of Chemistry Bar-Ilan University, Ramat-Gan, Israel
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42
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Improving the operational parameters with high electrical energy efficiency for UVC induced advanced oxidation and mineralization of Acid blue 29: Generation of eco-friendly effluent. Sep Purif Technol 2013. [DOI: 10.1016/j.seppur.2013.01.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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43
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Chapman JS, Ferguson R, Consalo C, Bliss T. Bacteriostatic effect of sequential hydrodynamic and ultrasound-induced stress. J Appl Microbiol 2013; 114:947-55. [PMID: 23360068 DOI: 10.1111/jam.12146] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2012] [Revised: 11/12/2012] [Accepted: 11/18/2012] [Indexed: 12/01/2022]
Abstract
AIMS To elucidate the mechanism of action of a nonchemical microbial control technology employing coupled hydrodynamic and ultrasound-induced stress. METHODS & RESULTS The effects of a laboratory model system using a commercial nonchemical device on Pseudomonas putida revealed growth and respiration were inhibited without a loss of viability from the treated population. Damage to cell membranes was evident using fluorescent microscopy and a reporter strain containing lux genes fused with a membrane damage stress-response promoter. Other reporter strains also indicated the possible involvement of DNA and protein repair systems. A consequence of treatment was a reduced ability to form biofilms. CONCLUSIONS The nonchemical device caused a biostatic effect on treated cells induced by sublethal damage to several cellular systems, including cell membranes. SIGNIFICANCE AND IMPACT OF THE STUDY The study demonstrates that biostasis can be an effective mechanism for microbial control in some industrial systems and provides insight into understanding and applying this device and other nonchemical microbial control technologies to real-world problems of microbial contamination.
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Affiliation(s)
- J S Chapman
- Ashland Water Technologies, Inc, Wilmington, DE 19808, USA.
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Li F, Lei C, Shen Q, Li L, Wang M, Guo M, Huang Y, Nie Z, Yao S. Analysis of copper nanoparticles toxicity based on a stress-responsive bacterial biosensor array. NANOSCALE 2013; 5:653-662. [PMID: 23223666 DOI: 10.1039/c2nr32156d] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The rapid development in nanoparticle production and application during the past decade requires an easy, rapid, and predictive screening method for nanoparticles toxicity assay. In this study, the toxicological effects and the source of toxicity of copper nanoparticles (CuNPs) are investigated based on a stress-responsive bacterial biosensor array. According to the responses of the biosensing strains, it is found that CuNPs induce not only oxidative stress in E. coli, but also protein damage, DNA damage, and cell membrane damage, and ultimately cause cell growth inhibition. Through enzyme detoxification analysis, the toxicological effects of CuNPs are traced to H(2)O(2) generation from CuNPs. Rapid copper release from CuNPs and Cu(I) production are observed. The oxidation of the released Cu(I) has a close relation to H(2)O(2) production, as tris-(hydroxypropyltriazolylmethyl) amine, the specific Cu(I) chelator, can largely protect the cells from the toxicity of CuNPs. In addition, the TEM study shows that CuNPs can be adsorbed and incepted fast by the cells. Comparatively, copper microparticles are relatively stable in the system and practically non-toxic, which indicates the importance of toxic estimation of materials at the nanoscale. In addition, the Cu(II) ion can induce protein damage, membrane damage, and slight DNA damage only at a relatively high concentration. The current study reveals the preliminary mechanism of toxicity of CuNPs, and suggests that the stress-responsive bacterial biosensor array can be used as a simple and promising tool for rapid screening in vitro toxicity of nanoparticles and studying the primary mechanism of the toxicity.
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Affiliation(s)
- Fenfang Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, PR China
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Applerot G, Lellouche J, Lipovsky A, Nitzan Y, Lubart R, Gedanken A, Banin E. Understanding the antibacterial mechanism of CuO nanoparticles: revealing the route of induced oxidative stress. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2012; 8:3326-3337. [PMID: 22888058 DOI: 10.1002/smll.201200772] [Citation(s) in RCA: 296] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2012] [Revised: 06/15/2012] [Indexed: 06/01/2023]
Abstract
To date, there is still a lack of definite knowledge regarding the interaction of CuO nanoparticles with bacteria and the possible permeation of the nanoparticles into bacterial cells. This study was aimed at shedding light on the size-dependent (from the microscale down to the small nanoscale) antibacterial activity of CuO. The potent antibacterial activity of CuO nanoparticles was found to be due to ROS-generation by the nanoparticles attached to the bacterial cells, which in turn provoked an enhancement of the intracellular oxidative stress. This paradigm was confirmed by several assays such as lipid peroxidation and reporter strains of oxidative stress. Furthermore, electron microscopy indicated that the small nanoparticles of CuO penetrated the cells. Collectively, the results reported herein may reconcile conflicting concepts in the literature concerning the antibacterial mechanism of CuO nanoparticles, as well as highlight the potential for developing sustainable CuO nanoparticles-based devices for inhibiting bacterial infections.
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Affiliation(s)
- Guy Applerot
- Department of Chemistry and Kanbar Laboratory for Nanomaterials, Bar-Ilan University Center for Advanced Materials & Nanotechnology, Bar-Ilan University, Ramat-Gan 52900, Israel
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Demidova EV, Goryachkovskaya TN, Malup TK, Bannikova SV, Semenov AI, Vinokurov NA, Kolchanov NA, Popik VM, Peltek SE. Studying the non-thermal effects of terahertz radiation on E. coli/pKatG-GFP biosensor cells. Bioelectromagnetics 2012; 34:15-21. [PMID: 22674118 DOI: 10.1002/bem.21736] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2011] [Accepted: 04/26/2012] [Indexed: 11/11/2022]
Abstract
Studies of the impact of terahertz radiation on living objects present a significant interest since its use for security systems is currently considered promising. We studied the non-thermal impact of terahertz radiation on E. coli/pKatG-gfp biosensor cells. The Novosibirsk free electron laser (NovoFEL), which currently has the world's highest average and peak power, was used as the source of terahertz radiation. We demonstrated that exposure to terahertz radiation at the wavelengths of 130, 150, and 200 µm and a power of 1.4 W/cm(2) induces changes in green fluorescent protein (GFP) fluorescence values and thus induces the expression of GFP in E. coli/pKatG-gfp biosensor cells. Possible mechanisms of the E. coli response to non-thermal exposure to terahertz radiation are discussed.
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Affiliation(s)
- Elizaveta V Demidova
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
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The evolution of the bacterial luciferase gene cassette (lux) as a real-time bioreporter. SENSORS 2012; 12:732-52. [PMID: 22368493 PMCID: PMC3279237 DOI: 10.3390/s120100732] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2011] [Revised: 12/30/2011] [Accepted: 01/09/2012] [Indexed: 01/23/2023]
Abstract
The bacterial luciferase gene cassette (lux) is unique among bioluminescent bioreporter systems due to its ability to synthesize and/or scavenge all of the substrate compounds required for its production of light. As a result, the lux system has the unique ability to autonomously produce a luminescent signal, either continuously or in response to the presence of a specific trigger, across a wide array of organismal hosts. While originally employed extensively as a bacterial bioreporter system for the detection of specific chemical signals in environmental samples, the use of lux as a bioreporter technology has continuously expanded over the last 30 years to include expression in eukaryotic cells such as Saccharomyces cerevisiae and even human cell lines as well. Under these conditions, the lux system has been developed for use as a biomedical detection tool for toxicity screening and visualization of tumors in small animal models. As the technologies for lux signal detection continue to improve, it is poised to become one of the first fully implantable detection systems for intra-organismal optical detection through direct marriage to an implantable photon-detecting digital chip. This review presents the basic biochemical background that allows the lux system to continuously autobioluminesce and highlights the important milestones in the use of lux-based bioreporters as they have evolved from chemical detection platforms in prokaryotic bacteria to rodent-based tumorigenesis study targets. In addition, the future of lux imaging using integrated circuit microluminometry to image directly within a living host in real-time will be introduced and its role in the development of dose/response therapeutic systems will be highlighted.
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48
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Sunya S, Gorret N, Delvigne F, Uribelarrea JL, Molina-Jouve C. Real-time monitoring of metabolic shift and transcriptional induction of yciG::luxCDABE E. coli reporter strain to a glucose pulse of different concentrations. J Biotechnol 2011; 157:379-90. [PMID: 22209969 DOI: 10.1016/j.jbiotec.2011.12.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2011] [Revised: 11/20/2011] [Accepted: 12/12/2011] [Indexed: 10/14/2022]
Abstract
Ineffective mixing entailing heterogeneity issue within industrial bioreactors has been reported to affect microbial physiology and consequently bioprocess performances. Alteration of these performances results from microorganism ability to modulate their physiology at metabolic and/or transcriptional levels in order to survive in a given environment. Until now, dynamics of both metabolic and transcriptional microbial response to external stimuli have been investigated using mainly ex situ measurements with sampling and/or quenching constraints. This work showed an in situ bioluminescence approach for real-time monitoring of characteristic stress responses of Escherichia coli containing yciG::luxCDABE reporter to glucose pulses in well-controlled steady-state chemostat cultures. Reproducibility of in situ bioluminescence profiles was assessed. A dramatic transient increase in the bioluminescence intensity (sharp peak) was observed for a complete depletion of sugars and for a sudden decrease in the dilution rate. This response was connected to a sudden change of the metabolic activity. On the contrary a bell curve of bioluminescence intensity, dose-dependent, was related to an induction of transcriptional activity. Real-time monitoring of the bioluminescence signal with time-span less than a second gave access to the characteristic times of the metabolic shift and transcriptional induction of the stress response.
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Affiliation(s)
- Sirichai Sunya
- Université de Toulouse, INSA, UPS, INP, LISBP, 135 Avenue de Rangueil, F-31077 Toulouse, France
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49
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Mitchell RJ, Gu MB. Use of protein stability to develop dual luciferase toxicity bioreporter strains. BIOTECHNOL BIOPROC E 2011. [DOI: 10.1007/s12257-011-0184-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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50
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Dams RI, Biswas A, Olesiejuk A, Fernandes T, Christofi N. Silver nanotoxicity using a light-emitting biosensor Pseudomonas putida isolated from a wastewater treatment plant. JOURNAL OF HAZARDOUS MATERIALS 2011; 195:68-72. [PMID: 21906877 DOI: 10.1016/j.jhazmat.2011.08.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2010] [Revised: 07/29/2011] [Accepted: 08/04/2011] [Indexed: 05/31/2023]
Abstract
The effect of silver ions, nano- and micro-particles on a luminescent biosensor bacterium Pseudomonas putida originally isolated from activated sludge was assessed. The bacterium carrying a stable chromosomal copy of the lux operon (luxCDABE) was able to detect toxicity of ionic and particulate silver over short term incubations ranging from 30 to 240 min. The IC(50) values obtained at different time intervals showed that highest toxicity (lowest IC(50)) was obtained after 90 min incubation for all toxicants and this is considered the optimum incubation for testing. The data show that ionic silver is the most toxic followed by nanosilver particles with microsilver particles being least toxic. Release of nanomaterials is likely to have an effect on the activated sludge process as indicated by the study using a common sludge bacterium involved in biodegradation of organic wastes.
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Affiliation(s)
- R I Dams
- Centre for Nano Safety, Edinburgh Napier University, Scotland, UK.
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