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For: Zhang Z, Macalpine DM, Kapler GM. Developmental regulation of DNA replication: replication fork barriers and programmed gene amplification in Tetrahymena thermophila. Mol Cell Biol 1997;17:6147-56. [PMID: 9315675 PMCID: PMC232465 DOI: 10.1128/mcb.17.10.6147] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
Number Cited by Other Article(s)
1
Meng X, Dang HQ, Kapler GM. Developmentally Programmed Switches in DNA Replication: Gene Amplification and Genome-Wide Endoreplication in Tetrahymena. Microorganisms 2023;11:microorganisms11020491. [PMID: 36838456 PMCID: PMC9967165 DOI: 10.3390/microorganisms11020491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 12/29/2022] [Accepted: 02/09/2023] [Indexed: 02/18/2023]  Open
2
Üstüntanır Dede AF, Arslanyolu M. Construction and dynamic characterization of a Tetrahymena thermophila macronuclear artificial chromosome. Gene 2020;748:144697. [PMID: 32325092 DOI: 10.1016/j.gene.2020.144697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 04/15/2020] [Accepted: 04/17/2020] [Indexed: 11/18/2022]
3
Han X, Yan G, Ma Y, Miao W, Wang G. Sequencing and characterization of the macronuclear rDNA minichromosome of the protozoan Tetrahymena pyriformis. Int J Biol Macromol 2020;147:576-581. [PMID: 31931068 DOI: 10.1016/j.ijbiomac.2020.01.063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Revised: 12/06/2019] [Accepted: 01/06/2020] [Indexed: 10/25/2022]
4
Coordinating Replication with Transcription. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2017;1042:455-487. [PMID: 29357070 DOI: 10.1007/978-981-10-6955-0_20] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
5
Sandoval PY, Lee PH, Meng X, Kapler GM. Checkpoint Activation of an Unconventional DNA Replication Program in Tetrahymena. PLoS Genet 2015. [PMID: 26218270 PMCID: PMC4517752 DOI: 10.1371/journal.pgen.1005405] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
6
Lee PH, Meng X, Kapler GM. Developmental regulation of the Tetrahymena thermophila origin recognition complex. PLoS Genet 2015;11:e1004875. [PMID: 25569357 PMCID: PMC4287346 DOI: 10.1371/journal.pgen.1004875] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Accepted: 11/05/2014] [Indexed: 01/06/2023]  Open
7
Gao S, Xiong J, Zhang C, Berquist BR, Yang R, Zhao M, Molascon AJ, Kwiatkowski SY, Yuan D, Qin Z, Wen J, Kapler GM, Andrews PC, Miao W, Liu Y. Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation. Genes Dev 2013;27:1662-79. [PMID: 23884606 DOI: 10.1101/gad.218966.113] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
8
Transcription-replication encounters, consequences and genomic instability. Nat Struct Mol Biol 2013;20:412-8. [PMID: 23552296 DOI: 10.1038/nsmb.2543] [Citation(s) in RCA: 210] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Accepted: 02/07/2013] [Indexed: 12/16/2022]
9
Houseley J, Tollervey D. Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery. Nucleic Acids Res 2011;39:8778-91. [PMID: 21768125 PMCID: PMC3203602 DOI: 10.1093/nar/gkr589] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2011] [Revised: 06/30/2011] [Accepted: 06/30/2011] [Indexed: 11/12/2022]  Open
10
Dalgaard JZ, Eydmann T, Koulintchenko M, Sayrac S, Vengrova S, Yamada-Inagawa T. Random and site-specific replication termination. Methods Mol Biol 2009;521:35-53. [PMID: 19563100 DOI: 10.1007/978-1-60327-815-7_3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
11
Mayán-Santos MD, Martínez-Robles ML, Hernández P, Schvartzman JB, Krimer DB. A redundancy of processes that cause replication fork stalling enhances recombination at two distinct sites in yeast rDNA. Mol Microbiol 2008;69:361-75. [PMID: 18485068 DOI: 10.1111/j.1365-2958.2008.06278.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
12
Extreme polyploidy in a large bacterium. Proc Natl Acad Sci U S A 2008;105:6730-4. [PMID: 18445653 DOI: 10.1073/pnas.0707522105] [Citation(s) in RCA: 104] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Tetrahymena ORC contains a ribosomal RNA fragment that participates in rDNA origin recognition. EMBO J 2007;26:5048-60. [PMID: 18007594 DOI: 10.1038/sj.emboj.7601919] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2007] [Accepted: 10/18/2007] [Indexed: 11/08/2022]  Open
14
Mirkin EV, Mirkin SM. Replication fork stalling at natural impediments. Microbiol Mol Biol Rev 2007;71:13-35. [PMID: 17347517 PMCID: PMC1847372 DOI: 10.1128/mmbr.00030-06] [Citation(s) in RCA: 400] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
15
Wang JD, Sanders GM, Grossman AD. Nutritional control of elongation of DNA replication by (p)ppGpp. Cell 2007;128:865-75. [PMID: 17350574 PMCID: PMC1850998 DOI: 10.1016/j.cell.2006.12.043] [Citation(s) in RCA: 229] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2006] [Revised: 12/04/2006] [Accepted: 12/06/2006] [Indexed: 10/23/2022]
16
Yakisich JS, Kapler GM. Deletion of the Tetrahymena thermophila rDNA replication fork barrier region disrupts macronuclear rDNA excision and creates a fragile site in the micronuclear genome. Nucleic Acids Res 2006;34:620-34. [PMID: 16449202 PMCID: PMC1356531 DOI: 10.1093/nar/gkj466] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
17
Mejía-Ramírez E, Sánchez-Gorostiaga A, Krimer DB, Schvartzman JB, Hernández P. The mating type switch-activating protein Sap1 Is required for replication fork arrest at the rRNA genes of fission yeast. Mol Cell Biol 2005;25:8755-61. [PMID: 16166653 PMCID: PMC1265749 DOI: 10.1128/mcb.25.19.8755-8761.2005] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
18
Lebofsky R, Bensimon A. DNA replication origin plasticity and perturbed fork progression in human inverted repeats. Mol Cell Biol 2005;25:6789-97. [PMID: 16024811 PMCID: PMC1190330 DOI: 10.1128/mcb.25.15.6789-6797.2005] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
19
Morrison TL, Yakisich JS, Cassidy-Hanley D, Kapler GM. TIF1 Represses rDNA replication initiation, but promotes normal S phase progression and chromosome transmission in Tetrahymena. Mol Biol Cell 2005;16:2624-35. [PMID: 15772155 PMCID: PMC1142411 DOI: 10.1091/mbc.e05-02-0107] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2005] [Accepted: 03/07/2005] [Indexed: 02/03/2023]  Open
20
Mirkin EV, Mirkin SM. Mechanisms of transcription-replication collisions in bacteria. Mol Cell Biol 2005;25:888-95. [PMID: 15657418 PMCID: PMC544003 DOI: 10.1128/mcb.25.3.888-895.2005] [Citation(s) in RCA: 141] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
21
Sánchez-Gorostiaga A, López-Estraño C, Krimer DB, Schvartzman JB, Hernández P. Transcription termination factor reb1p causes two replication fork barriers at its cognate sites in fission yeast ribosomal DNA in vivo. Mol Cell Biol 2004;24:398-406. [PMID: 14673172 PMCID: PMC303360 DOI: 10.1128/mcb.24.1.398-406.2004] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
22
Mohammad M, York RD, Hommel J, Kapler GM. Characterization of a novel origin recognition complex-like complex: implications for DNA recognition, cell cycle control, and locus-specific gene amplification. Mol Cell Biol 2003;23:5005-17. [PMID: 12832485 PMCID: PMC162205 DOI: 10.1128/mcb.23.14.5005-5017.2003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2003] [Revised: 03/14/2003] [Accepted: 04/17/2003] [Indexed: 11/20/2022]  Open
23
Codlin S, Dalgaard JZ. Complex mechanism of site-specific DNA replication termination in fission yeast. EMBO J 2003;22:3431-40. [PMID: 12840005 PMCID: PMC165654 DOI: 10.1093/emboj/cdg330] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
24
Tan M, Jahn CL, Price CM. Origin usage during euplotes ribosomal DNA amplification. EUKARYOTIC CELL 2003;2:115-22. [PMID: 12582128 PMCID: PMC141175 DOI: 10.1128/ec.2.1.115-122.2003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
25
Chen Y, Zhao M, Li ZP, He ML. The function of the nuclear matrix attachment region of silkworm rDNA as an autonomously replicating sequence in plasmid and chromosomal replication origin in yeast. Biochem Biophys Res Commun 2002;299:723-9. [PMID: 12470638 DOI: 10.1016/s0006-291x(02)02746-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
26
Saha S, Nicholson A, Kapler GM. Cloning and biochemical analysis of the tetrahymena origin binding protein TIF1: competitive DNA binding in vitro and in vivo to critical rDNA replication determinants. J Biol Chem 2001;276:45417-26. [PMID: 11577092 DOI: 10.1074/jbc.m106162200] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
27
Marsh TC, Cole ES, Romero DP. The transition from conjugal development to the first vegetative cell division is dependent on RAD51 expression in the ciliate Tetrahymena thermophila. Genetics 2001;157:1591-8. [PMID: 11290715 PMCID: PMC1461587 DOI: 10.1093/genetics/157.4.1591] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
28
Ward TR, Hoang ML, Prusty R, Lau CK, Keil RL, Fangman WL, Brewer BJ. Ribosomal DNA replication fork barrier and HOT1 recombination hot spot: shared sequences but independent activities. Mol Cell Biol 2000;20:4948-57. [PMID: 10848619 PMCID: PMC85945 DOI: 10.1128/mcb.20.13.4948-4957.2000] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
29
Mohammad M, Saha S, Kapler GM. Three different proteins recognize a multifunctional determinant that controls replication initiation, fork arrest and transcription in Tetrahymena. Nucleic Acids Res 2000;28:843-51. [PMID: 10637338 PMCID: PMC102555 DOI: 10.1093/nar/28.3.843] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
30
Saha S, Kapler GM. Allele-specific protein-DNA interactions between the single-stranded DNA-binding protein, ssA-TIBF, and DNA replication determinants in Tetrahymena. J Mol Biol 2000;295:423-39. [PMID: 10623536 DOI: 10.1006/jmbi.1999.3365] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
31
Hyrien O. Mechanisms and consequences of replication fork arrest. Biochimie 2000;82:5-17. [PMID: 10717381 DOI: 10.1016/s0300-9084(00)00344-8] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
32
Rothstein R, Michel B, Gangloff S. Replication fork pausing and recombination or “gimme a break”. Genes Dev 2000. [DOI: 10.1101/gad.14.1.1] [Citation(s) in RCA: 122] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
33
Karrer KM. Tetrahymena genetics: two nuclei are better than one. Methods Cell Biol 1999;62:127-86. [PMID: 10503190 DOI: 10.1016/s0091-679x(08)61529-0] [Citation(s) in RCA: 84] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
34
Maric C, Levacher B, Hyrien O. Developmental regulation of replication fork pausing in Xenopus laevis ribosomal RNA genes. J Mol Biol 1999;291:775-88. [PMID: 10452888 DOI: 10.1006/jmbi.1999.3017] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
35
Reischmann KP, Zhang Z, Kapler GM. Long range cooperative interactions regulate the initiation of replication in the Tetrahymena thermophila rDNA minichromosome. Nucleic Acids Res 1999;27:3079-89. [PMID: 10454603 PMCID: PMC148533 DOI: 10.1093/nar/27.15.3079] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
36
Hurst ST, Rivier DH. Identification of a compound origin of replication at the HMR-E locus in Saccharomyces cerevisiae. J Biol Chem 1999;274:4155-9. [PMID: 9933610 DOI: 10.1074/jbc.274.7.4155] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
37
Yue M, Reischmann KP, Kapler GM. Conserved cis- and trans-acting determinants for replication initiation and regulation of replication fork movement in tetrahymenid species. Nucleic Acids Res 1998;26:4635-44. [PMID: 9753731 PMCID: PMC147887 DOI: 10.1093/nar/26.20.4635] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
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