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Webster KA, Ponte B, Vasquez-Gross H, Petereit J, Hutchinson J, Riddle MR. Differential expression of sex regulatory genes in gonads of Astyanax mexicanus surface fish and cavefish. BMC Ecol Evol 2025; 25:57. [PMID: 40437379 PMCID: PMC12117805 DOI: 10.1186/s12862-025-02376-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2024] [Accepted: 04/11/2025] [Indexed: 06/01/2025] Open
Abstract
BACKGROUND Astyanax mexicanus is a single species of fish that consists of river-dwelling (surface) and cave-dwelling morphotypes. Little is known about how sexual determination, differentiation or reproduction have evolved in the surface morphs or cavefish, though divergence in reproductive strategy is expected as the latter have adapted to the novel cave environment. Evolution of the gonad transcriptome may underlie the differences in gamete morphology, fertility, and fecundity previously reported between morphotypes. RESULTS We compared the ovary and testis transcriptome of surface fish and cavefish at juvenile and adult stages. We found that samples clustered by developmental stage, sex, and morphotype identity. Several key genes that are typically associated with the female gonad in other vertebrates showed a reversal in sexual dimorphism or were not differentially expressed between sexes in A. mexicanus. In contrast, gene expression typically associated with male gonads was largely conserved and consistent with vertebrate testicular expression profiles. Transcriptional and physiological differences between surface fish and cavefish morphotypes were observed in gonads from both sexes. Cavefish ovaries exhibited unique upregulation of neuron development and differentiation genes, and extensive innervation of the ovarian epithelium, while cavefish testes showed increased expression of angiogenesis regulating genes, and greater vasculature density compared to surface fish testes. CONCLUSIONS These results reveal significant gene expression differences between A. mexicanus surface fish and cavefish morphotypes that may have functional consequences in gonad morphogenesis and fertility. Our findings provide a foundation for investigating the evolution of sex regulatory pathways and reproductive strategies in animals adapting to new and challenging environments in which nutrient availability, temperature, and mate selection are suboptimal.
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Affiliation(s)
| | | | - Hans Vasquez-Gross
- Nevada Bioinformatics Center (RRID:SCR_017802), University of Nevada, Reno, Reno, NV, USA
| | - Juli Petereit
- Nevada Bioinformatics Center (RRID:SCR_017802), University of Nevada, Reno, Reno, NV, USA
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Cardoso AL, Moreira CDN, Nascimento YJDCD, Frade LFDS, Noronha RCR, Amado LL, Martins C. Genomic and cellular contributions to establish the fish Hyphessobrycon heterorhabdus as an Amazonian model for ecotoxicology. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2025; 44:146-158. [PMID: 39887273 DOI: 10.1093/etojnl/vgae014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 09/02/2024] [Accepted: 09/04/2024] [Indexed: 02/01/2025]
Abstract
The Amazon has environmental characteristics that make it unique, and the species that inhabit it have physiological features that demonstrate their adaptation to an Amazonian context. Amazonian ecosystems have been undergoing transformations that result from inadequate human actions, which have placed biodiversity at the limits of their biological abilities. Therefore, it is essential to identify organisms that reflect the conditions of the Amazon environment, considering the physiology of these species, and that they are established as bioindicators for this region. The fish Hyphessobrycon heterorhabdus is distributed throughout the lower and middle Amazon basin. Aiming to contribute to the establishment of this species as a bioindicator, we carried out for the first time its karyotyping, Illumina sequencing and assembly of the nuclear genome and mitogenome, in addition to establishing a cell line for this species. Individuals of H. heterorhabdus have 48 chromosomes, a number that is held in the cell line. Sequencing and genomic assembly generated a draft genome that is useful for recovering species-specific coding and regulatory genomic sequences. The established cell line was responsive to environmental variables, reflecting in vivo observations. Thus, it was possible to present a set of resources (standard karyotype, centromeric marker, draft genome, mitogenome, and cell line) and their applications and relevance in ecotoxicology. The toolkit should contribute to further studies on the response of organisms to the natural conditions of the Amazon and the impacts that this region has been receiving.
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Affiliation(s)
- Adauto Lima Cardoso
- Laboratório de Ecotoxicologia, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
- Laboratório de Pesquisa em Monitoramento Ambiental Marinho, Instituto de Geociências, Universidade Federal do Pará, Belém, PA, Brazil
- Integrative Genomics Laboratory, Institute of Biosciences, São Paulo State University, Botucatu, SP, Brazil
| | - Camila do Nascimento Moreira
- Integrative Genomics Laboratory, Institute of Biosciences, São Paulo State University, Botucatu, SP, Brazil
- Centro de Estudos e Células Tronco, Terapia Celular e Genética Toxicológica, Universidade Federal de Mato Grosso do Sul, MS, Brazil
| | - Yure Jefferson da Cruz do Nascimento
- Laboratório de Ecotoxicologia, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
- Laboratório de Pesquisa em Monitoramento Ambiental Marinho, Instituto de Geociências, Universidade Federal do Pará, Belém, PA, Brazil
| | - Luan Felipe da Silva Frade
- Laboratório de Genética e Biologia Celular, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
| | - Renata Coelho Rodrigues Noronha
- Laboratório de Genética e Biologia Celular, Centro de Estudos Avançados da Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
| | - Lílian Lund Amado
- Laboratório de Ecotoxicologia, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil
- Laboratório de Pesquisa em Monitoramento Ambiental Marinho, Instituto de Geociências, Universidade Federal do Pará, Belém, PA, Brazil
| | - Cesar Martins
- Integrative Genomics Laboratory, Institute of Biosciences, São Paulo State University, Botucatu, SP, Brazil
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van der Weele CM, Hospes KC, Rowe KE, Jeffery WR. Hypoxia-sonic hedgehog axis as a driver of primitive hematopoiesis development and evolution in cavefish. Dev Biol 2024; 516:138-147. [PMID: 39173434 PMCID: PMC11402556 DOI: 10.1016/j.ydbio.2024.08.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/09/2024] [Accepted: 08/15/2024] [Indexed: 08/24/2024]
Abstract
The teleost Astyanax mexicanus consists of surface dwelling (surface fish) and cave dwelling (cavefish) forms. Cavefish have evolved in subterranean habitats characterized by reduced oxygen levels (hypoxia) and exhibit a subset of phenotypic traits controlled by increased Sonic hedgehog (Shh) signaling along the embryonic midline. The enhancement of primitive hematopoietic domains, which are formed bilaterally in the anterior and posterior lateral plate mesoderm, are responsible for the development of more larval erythrocytes in cavefish relative to surface fish. In this study, we determine the role of hypoxia and Shh signaling in the development and evolution of primitive hematopoiesis in cavefish. We show that hypoxia treatment during embryogenesis increases primitive hematopoiesis and erythrocyte development in surface fish. We also demonstrate that upregulation of Shh midline signaling by the Smoothened agonist SAG increases primitive hematopoiesis and erythrocyte development in surface fish, whereas Shh downregulation via treatment with the Smoothened inhibitor cyclopamine decreases these traits in cavefish. Together these results suggest that hematopoietic enhancement is regulated by hypoxia and Shh signaling. Lastly, we demonstrate that hypoxia enhances expression of Shh signaling along the midline of surface fish embryos. We conclude that hypoxia-mediated Shh plasticity may be a driving force for the adaptive evolution of primitive hematopoiesis and erythrocyte development in cavefish.
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Affiliation(s)
| | - Katrina C Hospes
- Department of Biology, University of Maryland, College Park, MD, 20742, USA
| | - Katherine E Rowe
- Department of Biology, University of Maryland, College Park, MD, 20742, USA
| | - William R Jeffery
- Department of Biology, University of Maryland, College Park, MD, 20742, USA.
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van der Weele CM, Hospes KC, Rowe KE, Jeffery WR. Hypoxia-Sonic Hedgehog Axis as a Driver of Primitive Hematopoiesis Development and Evolution in Cavefish. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.06.09.598120. [PMID: 38895301 PMCID: PMC11185782 DOI: 10.1101/2024.06.09.598120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]
Abstract
The teleost Astyanax mexicanus consists of surface dwelling (surface fish) and cave dwelling (cavefish) forms. Cavefish have evolved in subterranean habitats characterized by reduced oxygen levels (hypoxia) and show constructive and regressive phenotypic traits controlled by increased Sonic hedgehog (Shh) signaling along the embryonic midline. The enhancement of primitive hematopoietic domains, which are formed bilaterally in the anterior and posterior lateral plate mesoderm, are responsible for the development of more larval erythrocytes in cavefish relative to surface fish. In this study, we determine the role of hypoxia and Shh signaling in the development and evolution of primitive hematopoiesis in cavefish. We show that hypoxia treatment during embryogenesis increases primitive hematopoiesis and erythrocyte development in surface fish. We also demonstrate that upregulation of Shh midline signaling by treatment with the Smoothened agonist SAG increases primitive hematopoiesis and erythrocyte development in surface fish, whereas Shh downregulation via treatment with the Smoothened inhibitor cyclopamine decreases these traits in cavefish. Together these results suggest that hematopoietic enhancement is regulated by hypoxia and the Shh signaling system. Lastly, we demonstrate that hypoxia treatment enhances expression of Shh signaling along the midline of surface fish embryos. Thus, we conclude that a hypoxia-Shh axis may drive the adaptive evolution of primitive hematopoiesis and erythrocyte development in cavefish. Highlights Hypoxia increases hematopoiesis and erythrocytes in surface fishShh upregulation increases hematopoiesis and erythrocytes in surface fishShh inhibition decreases hematopoiesis and erythrocytes in cavefishHypoxia upregulates Shh along the embryonic midline in surface fish.
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