Modular Brain Networks

Dynamic modular dysregulation in multilayer networks underlies cognitive and clinical deficits in first-episode schizophrenia

Schizophrenia has been identified to exhibit significant abnormalities in brain functional networks, which are likely to underpin the cognitive and functional impairments observed in patients. Graph theoretical analysis revealed the disrupted modularity in schizophrenia, however, the dynamic network abnormalities in schizophrenia remains unclear. We collected the resting-state functional magnetic resonance imaging data from 82 first-episode schizophrenia (FES) patients and 55 healthy control (HC) subjects. Dynamic functional connectivity matrices were constructed and a multilayer network model was employed to run the dynamic modularity analysis. We also performed correlation analyses to investigate the relationship between flexibility, cognitive function and clinical symptoms. Our findings indicate that FES patients exhibit higher multilayer modularity. The node flexibility of FES patients were found elevated in several brain regions, which were included in the default mode network, fronto-parietal network, salience network and visual network. The node flexibility metrics in aberrant brain regions were found to demonstrate significant correlations with cognitive function and negative symptoms in patients with FES. These findings suggest a pathological imbalance in brain network dynamics, where abnormal modular organization might contribute to the cognitive impairment and functional deficits in schizophrenia.

Altered neural avalanche spreading in people with drug-resistant epilepsy✰

OBJECTIVE

To characterize a peculiar "EEG endophenotype" of drug-resistant epilepsy (DRE) through the graph theory characterization of avalanche spatiotemporal spreading properties.

METHODS

We performed avalanche analysis and computed avalanche transition matrices (ATMs) on 19-channel scalp EEG of 120 people with epilepsy (60 DRE and 60 non-DRE) who assumed two anti-seizure medications, comparing such results with a group of 40 healthy subjects (HS). Network topologies of ATMs were characterized through graph theory metrics. We performed an analysis of variance to compare aperiodic metrics between HS, DRE and non-DRE. Logistic regression was performed to test and compare the ability of graph theory metrics on ATM and clinical features to correctly discriminate the PwE group according to the clinical outcome (DRE or non-DRE).

RESULTS

DRE exhibited a peculiar altered avalanche spreading as proved by the higher mean betweenness centrality, the longer characteristic path length and the lower small-world index (more regular and less plastic network topology) of ATMs than non-DRE and HS (p-values from <0.001 to 0.05). Graph metrics on ATMs significantly improved the yield of detecting DRE and contributed the most to the model accuracy (0.83) than clinical features. Resting-state EEG activity of HS and PwE did not deviate from the characteristics of a system operating at criticality.

CONCLUSIONS

ATMs detect alterations of resting-state networks peculiar to the DRE condition.

SIGNIFICANCE

These findings could open new scenarios for the future identification of promising biomarkers of DRE through scalp EEG.

Hierarchy of Chaotic Dynamics in Random Modular Networks

We introduce a model of randomly connected neural populations and study its dynamics by means of the dynamical mean-field theory and simulations. Our analysis uncovers a rich phase diagram, featuring high- and low-dimensional chaotic phases, separated by a crossover region characterized by low values of the maximal Lyapunov exponent and participation ratio dimension, but with high values of the Lyapunov dimension that change significantly across the region. Counterintuitively, chaos can be attenuated by either adding noise to strongly modular connectivity or by introducing modularity into random connectivity. Extending the model to include a multilevel, hierarchical connectivity reveals that a loose balance between activities across levels drives the system towards the edge of chaos.

Altered integrated and segregated states in cocaine use disorder

Introduction

Cocaine use disorder (CUD) is a chronic brain condition that severely impairs cognitive function and behavioral control. The neural mechanisms underlying CUD, particularly its impact on brain integration-segregation dynamics, remain unclear.

Methods

In this study, we integrate dynamic functional connectivity and graph theory to compare the brain state properties of healthy controls and CUD patients.

Results

We find that CUD influences both integrated and segregated states, leading to distinct alterations in connectivity patterns and network properties. CUD disrupts connectivity involving the default mode network, frontoparietal network, and subcortical structures. In addition, integrated states show distinct sensorimotor connectivity alterations, while segregated states exhibit significant alterations in frontoparietal-subcortical connectivity. Regional connectivity alterations among both states are significantly associated with MOR and H3 receptor distributions, with integrated states showing more receptor-connectivity couplings. Furthermore, CUD alters the positive-negative correlation balance, increases functional complexity at threshold 0, and reduces mean betweenness centrality and modularity in the critical subnetworks. Segregated states in CUD exhibit lower normalized clustering coefficients and functional complexity at a threshold of 0.3. We also identify network properties in integrated states that are reliably correlated with cocaine consumption patterns.

Discussion

Our findings reveal temporal effects of CUD on brain integration and segregation, providing novel insights into the dynamic neural mechanisms underlying cocaine addiction.

EEG-Based Micro-Expression Recognition: Flexible Brain Network Reconfiguration Supporting Micro-Expressions Under Positive Emotion

Purpose

Micro-expression recognition is valuable in clinical, security, judicial, economic, educational, and human-computer interaction fields. Electroencephalography (EEG)-based micro-expression recognition has gained attention for its objectivity and resistance to interference, unlike image-based methods. However, the neural mechanisms of micro-expressions remain unclear, limiting the development of EEG-based recognition technology.

Methods

We explored the brain reorganization mechanisms of micro-expressions (compared with macro-expressions and neutral expressions) under positive emotions across global networks, functional network modules, and hub brain regions using EEG, graph theory analysis, and functional connectivity.

Results

In global network, micro-expressions demonstrated higher network efficiency, clustering coefficient, and local efficiency, along with shorter average path lengths. In functional network modules, micro-expressions enhanced connectivity between the bilateral superior frontal gyrus (SFG), anterior cingulate cortex, and ventromedial prefrontal cortex (cognitive control), as well as between the left orbitofrontal cortex (OFC), temporal pole (TP), and inferior frontal gyrus (emotional processing). In hub brain regions, micro-expressions increased the hub centrality, information transmission efficiency, and local clustering of bilateral SFG, left OFC, left TP, and left Broca's area.

Conclusion

Micro-expressions require more efficient global communication and specialized emotion and cognitive control modules. Key hub regions supporting positive micro-expressions include the bilateral SFG (inhibitory control), left OFC and TP (emotion processing), and left Broca's area (language processing).

Neural basis of adolescent THC-induced potentiation of opioid responses later in life

Use of one addictive drug typically influences the behavioral response to other drugs, either administered at the same time or a subsequent time point. The nature of the drugs being used, as well as the timing and dosing, also influence how these drugs interact. Here, we tested the effects of adolescent THC exposure on the development of morphine-induced behavioral adaptations following repeated morphine exposure during adulthood. We found that adolescent THC administration paradoxically prevented the development of anxiety-related behaviors that emerge during a forced abstinence period following morphine administration but facilitated reinstatement of morphine CPP. Following forced abstinence, we then mapped the whole-brain response to a moderate dose of morphine and found that adolescent THC administration led to an overall increase in brain-wide neuronal activity and increased the functional connectivity between frontal cortical regions and the ventral tegmental area. Last, we show using rabies virus-based circuit mapping that adolescent THC exposure triggers a long-lasting elevation in connectivity from the frontal cortex regions onto ventral tegmental dopamine cells. Our study adds to the rich literature on the interaction between drugs, including THC and opioids, and provides potential neural substates by which adolescent THC exposure influences responses to morphine later in life.

Depthwise cortical iron relates to functional connectivity and fluid cognition in healthy aging

Age-related differences in fluid cognition have been associated with both the merging of functional brain networks, defined from resting-state functional magnetic resonance imaging (rsfMRI), and with elevated cortical iron, assessed by quantitative susceptibility mapping (QSM). Limited information is available, however, regarding the depthwise profile of cortical iron and its potential relation to functional connectivity. Here, using an adult lifespan sample (n = 138; 18-80 years), we assessed relations among graph theoretical measures of functional connectivity, column-based depthwise measures of cortical iron, and fluid cognition (i.e., tests of memory, perceptual-motor speed, executive function). Increased age was related both to less segregated functional networks and to increased cortical iron, especially for superficial depths. Functional network segregation mediated age-related differences in memory, whereas depthwise iron mediated age-related differences in general fluid cognition. Lastly, higher mean parietal iron predicted lower network segregation for adults younger than 45 years of age. These findings suggest that functional connectivity and depthwise cortical iron have distinct, complementary roles in the relation between age and fluid cognition in healthy adults.

Prediction of Verbal Abilities From Brain Connectivity Data Across the Lifespan Using a Machine Learning Approach

Compared to nonverbal cognition such as executive or memory functions, language-related cognition generally appears to remain more stable until later in life. Nevertheless, different language-related processes, for example, verbal fluency versus vocabulary knowledge, appear to show different trajectories across the life span. One potential explanation for differences in verbal functions may be alterations in the functional and structural network architecture of different large-scale brain networks. For example, differences in verbal abilities have been linked to the communication within and between the frontoparietal (FPN) and default mode network (DMN). It, however, remains open whether brain connectivity within these networks may be informative for language performance at the individual level across the life span. Further information in this regard may be highly desirable as verbal abilities allow us to participate in daily activities, are associated with quality of life, and may be considered in preventive and interventional setups to foster cognitive health across the life span. So far, mixed prediction results based on resting-state functional connectivity (FC) and structural connectivity (SC) data have been reported for language abilities across different samples, age groups, and machine-learning (ML) approaches. Therefore, the current study set out to investigate the predictability of verbal fluency and vocabulary knowledge based on brain connectivity data in the DMN, FPN, and the whole brain using an ML approach in a lifespan sample (N = 717; age range: 18-85) from the 1000BRAINS study. Prediction performance was, thereby, systematically compared across (i) verbal [verbal fluency and vocabulary knowledge] and nonverbal abilities [processing speed and visual working memory], (ii) modalities [FC and SC data], (iii) feature sets [DMN, FPN, DMN-FPN, and whole brain], and (iv) samples [total, younger, and older aged group]. Results from the current study showed that verbal abilities could not be reliably predicted from FC and SC data across feature sets and samples. Thereby, no predictability differences emerged between verbal fluency and vocabulary knowledge across input modalities, feature sets, and samples. In contrast to verbal functions, nonverbal abilities could be moderately predicted from connectivity data, particularly SC, in the total and younger age group. Satisfactory prediction performance for nonverbal cognitive functions based on currently chosen connectivity data was, however, not encountered in the older age group. Current results, hence, emphasized that verbal functions may be more difficult to predict from brain connectivity data in domain-general cognitive networks and the whole brain compared to nonverbal abilities, particularly executive functions, across the life span. Thus, it appears warranted to more closely investigate differences in predictability between different cognitive functions and age groups.

Visual mental imagery in typical imagers and in aphantasia: A millimeter-scale 7-T fMRI study

Most of us effortlessly describe visual objects, whether seen or remembered. Yet, around 4% of people report congenital aphantasia: they struggle to visualize objects despite being able to describe their visual appearance. What neural mechanisms create this disparity between subjective experience and objective performance? Aphantasia can provide novel insights into conscious processing and awareness. We used ultra-high field 7T fMRI to establish the neural circuits involved in visual mental imagery and perception, and to elucidate the neural mechanisms associated with the processing of internally generated visual information in the absence of imagery experience in congenital aphantasia. Ten typical imagers and 10 aphantasic individuals performed imagery and perceptual tasks in five domains: object shape, object color, written words, faces, and spatial relationships. In typical imagers, imagery tasks activated left-hemisphere frontoparietal areas, the relevant domain-preferring areas in the ventral temporal cortex partly overlapping with the perceptual domain-preferring areas, and a domain-general area in the left fusiform gyrus (the Fusiform Imagery Node). The results were valid for each individual participant. In aphantasic individuals, imagery activated similar visual areas, but there was reduced functional connectivity between the Fusiform Imagery Node and frontoparietal areas. Our results unveil the domain-general and domain-specific circuits of visual mental imagery, their functional disorganization in aphantasia, and support the general hypothesis that conscious visual experience - whether perceived or imagined - depends on the integrated activity of high-level visual cortex and frontoparietal networks.

Impaired brain ability of older adults to transit and persist to latent states with well-organized structures at wakeful rest

The intrinsic brain functional network organization continuously changes with aging. By integrating spatial and temporal information, the process of how brain networks temporally reconfigure and remain well-organized spatial structure largely reflects the brain function, thereby holds the potential to capture its age-related declines. In this study, we examined the spatiotemporal brain dynamics from resting-state functional Magnetic Resonance Imaging (fMRI) data of healthy young and older adults using a Hidden Markov Model (HMM). Six brain states were generated by HMM, with the young group showing higher fractional occupancy and mean dwell time in states 1, 3, and 4 (SY1, SY2 and SY3), and the older group in states 2, 5, and 6 (SO1, SO2 and SO3). Importantly, comparisons of transition probabilities revealed that the older group showed a reduced brain ability to transition into states dominated by the younger group, as well as a diminished capacity to persist in them. Moreover, graph analysis revealed that these young-specific states exhibited higher modularity and k-coreness. Collectively, these findings suggested that the older group showed impaired brain ability of both transition into and sustain well spatially organized states. This emphasized that the temporal changes in brain state organization, rather than its static mode, could be a key biomarker for detecting age-related functional decline. These insights may pave the way for targeted interventions aimed at mitigating cognitive decline in the aging population.

Intrinsic brain mapping of cognitive abilities: A multiple-dataset study on intelligence and its components

This study investigates how functional brain network features contribute to general intelligence and its cognitive components by analyzing three independent cohorts of healthy participants. Cognitive scores were derived from 1) the Wechsler Adult Intelligence Scale (WAIS-IV), 2) the Raven Standard Progressive Matrices (RPM), and 3) the NIH and Penn cognitive batteries from the Human Connectome Project. Factor analysis on the NIH and Penn cognitive batteries yielded latent variables that closely resembled the content of the WAIS-IV indices and RPM. We employed graph theory and a multi-resolution network analysis by varying the modularity parameter (γ) to investigate hierarchical brain-behavior relationships across different scales of brain organization. Brain-behavior associations were quantified using multi-level robust regression analyses to accommodate variability and confounds at the subject-level, node-level, and resolution-level. Our findings reveal consistent brain-behavior relationships across the datasets. Nodal efficiency in fronto-parietal sensorimotor regions consistently played a pivotal role in fluid reasoning, whereas efficiency in visual networks was linked to executive functions and memory. A broad, low-resolution 'task-positive' network emerged as predictive of full-scale IQ scores, indicating a hierarchical brain-behavior coding. Conversely, increased cross-network connections involving default mode and subcortical-limbic networks were associated with reductions in both general and specific cognitive performance. These outcomes highlight the relevance of network efficiency and integration, as well as of the hierarchical organization in supporting specific aspects of intelligence, while recognizing the inherent complexity of these relationships. Our multi-resolution network approach offers new insights into the interplay between multilayer network properties and the structure of cognitive abilities, advancing the understanding of the neural substrates of the intelligence construct.

Network topology and metabolic alterations in early- and mid-stage Parkinson's disease: insights from fluorodeoxyglucose PET imaging

OBJECTIVES

Parkinson's disease (PD) is a neurodegenerative disorder with distinct metabolic alterations in the brain, which are detectable via 18 F-FDG PET. This study aims to delineate glucose metabolism patterns and network topology changes across early- and mid-stage PD patients.

METHODS

A total of 80 PD patients (Hoehn-Yahr stages 1-3) were retrospectively analyzed, including 40 early-stage and 40 mid-stage cases, along with 40 age-matched healthy controls. All participants underwent 18 F-FDG PET imaging. The brain metabolic activity was quantified, and network topology was assessed using graph theory metrics. Statistical comparisons between PD stages and control groups were performed to identify significant differences in metabolic patterns and network alterations.

RESULTS

Early-stage PD patients exhibited hypermetabolism in regions such as the pons and thalamus, with significant differences in metabolic activity compared with controls. Mid-stage PD patients showed more extensive hypermetabolism in the pons, right cerebellum, and putamen, alongside hypometabolism in the cuneus and calcarine regions. Hub node connectivity analysis revealed decreased connectivity in temporal and occipital lobes for both stages, while the limbic and frontal lobes showed enhanced connectivity. Compared with early-stage PD, mid-stage PD had reduced connectivity in the limbic system but increased in the frontal and occipital lobes.

CONCLUSIONS

18 F-FDG PET imaging reveals progressive metabolic disruptions and network changes in PD, offering potential biomarkers for disease staging and therapeutic targeting, while also aiding in the understanding of disease progression and guiding therapeutic interventions.

Connectional axis of individual functional variability: Patterns, structural correlates, and relevance for development and cognition

The human cerebral cortex exhibits intricate interareal functional synchronization at the macroscale, with substantial individual variability in these functional connections. However, the spatial organization of functional connectivity (FC) variability across the human connectome edges and its significance in cognitive development remain unclear. Here, we identified a connectional axis in the edge-level FC variability. The variability declined continuously along this axis from within-network to between-network connections and from the edges linking association networks to those linking the sensorimotor and association networks. This connectional axis of functional variability is associated with spatial pattern of structural connectivity variability. Moreover, the connectional variability axis evolves in youth with an flatter axis slope. We also observed that the slope of the connectional variability axis was positively related to the performance in the higher-order cognition. Together, our results reveal a connectional axis in functional variability that is linked with structural connectome variability, refines during development, and is relevant to cognition.

Over-integration of visual network in major depressive disorder and its association with gene expression profiles

Major depressive disorder (MDD) is a common psychiatric condition associated with aberrant functional connectivity in large-scale brain networks. However, it is unclear how the network dysfunction is characterized by imbalance or derangement of network modular interaction in MDD patients and whether this disruption is associated with gene expression profiles. We included 262 MDD patients and 297 healthy controls, embarking on a comprehensive analysis of intrinsic brain activity using resting-state functional magnetic resonance imaging (R-fMRI). We assessed brain network integration by calculating the Participation Coefficient (PC) and conducted an analysis of intra- and inter-modular connections to reveal the dysconnectivity patterns underlying abnormal PC manifestations. Besides, we explored the potential relationship between the above graph theory measures and clinical symptoms severity in MDD. Finally, we sought to uncover the association between aberrant graph theory measures and postmortem gene expression data sourced from the Allen Human Brain Atlas (AHBA). Relative to the controls, alterations in systemic functional connectivity were observed in MDD patients. Specifically, increased PC within the bilateral visual network (VIS) was found, accompanied by elevated functional connectivities (FCs) between VIS and both higher-order networks and Limbic network (Limbic), contrasted by diminished FCs within the VIS and between the VIS and the sensorimotor network (SMN). The clinical correlations indicated positive associations between inter-VIS FCs and depression symptom, whereas negative correlations were noted between intra-VIS FCs with depression symptom and cognitive disfunction. The transcriptional profiles explained 21-23.5% variance of the altered brain network system dysconnectivity pattern, with the most correlated genes enriched in trans-synaptic signaling and ion transport regulation. These results highlight the modular connectome dysfunctions characteristic of MDD and its linkage with gene expression profiles and clinical symptomatology, providing insight into the neurobiological underpinnings and holding potential implications for clinical management and therapeutic interventions in MDD.

Entrainment by transcranial alternating current stimulation: Insights from models of cortical oscillations and dynamical systems theory

Signature of neuronal oscillations can be found in nearly every brain function. However, abnormal oscillatory activity is linked with several brain disorders. Transcranial alternating current stimulation (tACS) is a non-invasive brain stimulation technique that can potentially modulate neuronal oscillations and influence behavior both in health and disease. Yet, a complete understanding of how interacting networks of neurons are affected by tACS remains elusive. Entrainment effects by which tACS synchronizes neuronal oscillations is one of the main hypothesized mechanisms, as evidenced in animals and humans. Computational models of cortical oscillations may shed light on the entrainment effects of tACS, but current modeling studies lack specific guidelines to inform experimental investigations. This study addresses the existing gap in understanding the mechanisms of tACS effects on rhythmogenesis within the brain by providing a comprehensive overview of both theoretical and experimental perspectives. We explore the intricate interactions between oscillators and periodic stimulation through the lens of dynamical systems theory. Subsequently, we present a synthesis of experimental findings that demonstrate the effects of tACS on both individual neurons and collective oscillatory patterns in animal models and humans. Our review extends to computational investigations that elucidate the interplay between tACS and neuronal dynamics across diverse cortical network models. To illustrate these concepts, we conclude with a simple oscillatory neuron model, showcasing how fundamental theories of oscillatory behavior derived from dynamical systems, such as phase response of neurons to external perturbation, can account for the entrainment effects observed with tACS. Studies reviewed here render the necessity of integrated experimental and computational approaches for effective neuromodulation by tACS in health and disease.

Disrupted small-world architecture and altered default mode network topology of brain functional network in college students with subclinical depression

BACKGROUND

Subclinical depression (ScD), serving as a significant precursor to depression, is a prevalent condition in college students and imposes a substantial health service burden. However, the brain network topology of ScD remains poorly understood, impeding our comprehension of the neuropathology underlying ScD.

METHODS

Functional networks of individuals with ScD (n = 26) and healthy controls (HCs) (n = 33) were constructed based on functional magnetic resonance imaging data. These networks were then optimized using a small-worldness and modular similarity-based network thresholding method to ensure the robustness of functional networks. Subsequently, graph-theoretic methods were employed to investigated both global and nodal topological metrics of these functional networks.

RESULTS

Compared to HCs, individuals with ScD exhibited significantly higher characteristic path length, clustering coefficient, and local efficiency, as well as a significantly lower global efficiency. Additionally, significantly lower nodal centrality metrics were found in the default mode network (DMN) regions (anterior cingulate cortex, superior frontal gyrus, precuneus) and occipital lobe in ScD, and the nodal efficiency of the left precuneus was negatively correlated with the severity of depression.

CONCLUSIONS

Altered global metrics indicate a disrupted small-world architecture and a typical shift toward regular configuration of functional networks in ScD, which may result in lower efficiency of information transmission in the brain of ScD. Moreover, lower nodal centrality in DMN regions suggest that DMN dysfunction is a neuroimaging characteristic shared by both ScD and major depressive disorder, and might serve as a vital factor promoting the development of depression.

Patterns of neuronal synchrony in higher-order networks

Synchrony in neuronal networks is crucial for cognitive functions, motor coordination, and various neurological disorders. While traditional research has focused on pairwise interactions between neurons, recent studies highlight the importance of higher-order interactions involving multiple neurons. Both types of interactions lead to complex synchronous spatiotemporal patterns, including the fascinating phenomenon of chimera states, where synchronized and desynchronized neuronal activity coexist. These patterns are thought to resemble pathological states such as schizophrenia and Parkinson's disease, and their emergence is influenced by neuronal dynamics as well as by synaptic connections and network structure. This review integrates the current understanding of how pairwise and higher-order interactions contribute to different synchrony patterns in neuronal networks, providing a comprehensive overview of their role in shaping network dynamics. We explore a broad range of connectivity mechanisms that drive diverse neuronal synchrony patterns, from pairwise long-range temporal interactions and time-delayed coupling to adaptive communication and higher-order, time-varying connections. We cover key neuronal models, including the Hindmarsh-Rose model, the stochastic Hodgkin-Huxley model, the Sherman model, and the photosensitive FitzHugh-Nagumo model. By investigating the emergence and stability of various synchronous states, this review highlights their significance in neurological systems and indicates directions for future research in this rapidly evolving field.

Exploring the transmission of cognitive task information through optimal brain pathways

Understanding the large-scale information processing that underlies complex human cognition is the central goal of cognitive neuroscience. While emerging activity flow models demonstrate that cognitive task information is transferred by interregional functional or structural connectivity, graph-theory-based models typically assume that neural communication occurs via the shortest path of brain networks. However, whether the shortest path is the optimal route for empirical cognitive information transmission remains unclear. Based on a large-scale activity flow mapping framework, we found that the performance of activity flow prediction with the shortest path was significantly lower than that with the direct path. The shortest path routing was superior to other network communication strategies, including search information, path ensembles, and navigation. Intriguingly, the shortest path outperformed the direct path in activity flow prediction when the physical distance constraint and asymmetric routing contribution were simultaneously considered. This study not only challenges the shortest path assumption through empirical network models but also suggests that cognitive task information routing is constrained by the spatial and functional embedding of the brain network.

A Machine learning classification framework using fused fractal property feature vectors for Alzheimer's disease diagnosis

Alzheimer's disease (AD) profoundly affects brain tissue and network structures. Analyzing the topological properties of these networks helps to understand the progression of the disease. Most studies focus on single-scale brain networks, but few address multiscale brain networks. In this study, the renormalization group approach was applied to rescale the gray matter brain networks of AD patients and cognitively normal (CN) into three scales: the original, once-renormalized, and twice-renormalized networks. Based on the fractal property of these networks at different scales, a novel framework for classifying Alzheimer's disease using fractal and renormalization group was proposed. We integrated the fractal metrics across different scales to create fused feature vectors, which served as inputs for the classification framework aimed at diagnosing Alzheimer's disease. The experimental result indicates that the original and once-renormalized networks of both CN and AD exhibit the fractal property. The classification framework performed best when using the fused feature vector, including the average connection ratio of the original and once-renormalized networks. Using the fused feature vector of the average connection ratio, the One-Dimensional Convolution Neural Network model achieved an accuracy of 92.59% and an F1 score of 91.19%. This marks an improvement of approximately 10% in accuracy and 5% in F1 score compared to results using feature fusion of the average degree, average path length, and clustering coefficient.

Recovery of activation propagation and self-sustained oscillation abilities in stroke brain networks

Healthy brain networks usually show highly efficient information communication and self-sustained oscillation abilities. However, how the brain network structure affects these dynamics after an injury (stroke) is not very clear. The recovery of structure and dynamics of stroke brain networks over time is still not known precisely. Based on the analysis of a large number of strokes' brain network data, we show that stroke changes the network properties in connection weights, average degree, clustering, community, etc. Yet, they will recover gradually over time to some extent. We then adopt a simplified reaction-diffusion model to investigate stroke patients' activation propagation and self-sustained oscillation abilities. Our results reveal that the stroke slows the adoption time across different brain scales, indicating a weakened brain's activation propagation ability. In addition, we show that the lifetime of self-sustained oscillatory patterns at 3 months post-stroke, patients' brains significantly depart from the healthy ones. Finally, we examine the properties of core networks of self-sustained oscillatory patterns, in which the directed edges denote the main pathways of activation propagation. Our results demonstrate that the lifetime and recovery of self-sustaining patterns are related to the properties of core networks, and the properties in the post-stroke greatly vary from those in the healthy group. Most importantly, the strokes' activation propagation and self-sustained oscillation abilities significantly improve at 1 year post-stroke, driven by structural connection repair. This work may help us to understand the relationship between structure and function in brain disorders.

Reduced connection strength leads to enhancement of working memory capacity in cognitive training

It has been widely observed that cognitive training can enhance the working memory capacity (WMC) of participants, yet the underlying mechanisms remain unexplained. Previous research has confirmed that abacus-based mental calculation (AMC) training can enhance the WMC of subjects and suggested its possible association with changes in functional connectivity. With fMRI data, we construct whole brain resting state connectivity of subjects who underwent long-term AMC training and other subjects from a control group. Their working memory capacity is simulated based on their whole brain resting state connectivity and reservoir computing. It is found that the AMC group has higher WMC than the control group, and especially the WMC involved in the frontoparietal network (FPN), visual network (VIS) and sensorimotor network (SMN) associated with the AMC training is even higher in the AMC group. However, the advantage of the AMC group disappears if the connection strengths between brain regions are neglected. The effects on WMC from the connection strength differences between the AMC and control groups are evaluated. The results show that the WMC of the control group is enhanced and achieved consistency with or even better than that the AMC group if the connection strength of the control group are weakened. And the advantage of FPN, VIS and SMN is reproduced too. In conclusion, our work reveals a correlation between reduction in functional connection strength and enhancements in the WMC of subjects undergoing cognitive training.

Functional Hierarchy of the Human Neocortex from Cradle to Grave

Recent evidence indicates that the organization of the human neocortex is underpinned by smooth spatial gradients of functional connectivity (FC). These gradients provide crucial insight into the relationship between the brain's topographic organization and the texture of human cognition. However, no studies to date have charted how intrinsic FC gradient architecture develops across the entire human lifespan. In this work, we model developmental trajectories of the three primary gradients of FC using a large, high-quality, and temporally-dense functional MRI dataset spanning from birth to 100 years of age. The gradient axes, denoted as sensorimotor-association (SA), visual-somatosensory (VS), and modulation-representation (MR), encode crucial hierarchical organizing principles of the brain in development and aging. By tracking their development throughout the human lifespan, we provide the first ever comprehensive low-dimensional normative reference of global FC hierarchical architecture. We observe significant age-related changes in global network features, with global markers of hierarchical organization increasing from birth to early adulthood and decreasing thereafter. During infancy and early childhood, FC organization is shaped by primary sensory processing, dense short-range connectivity, and immature association and control hierarchies. Functional differentiation of transmodal systems supported by long-range coupling drives a convergence toward adult-like FC organization during late childhood, while adolescence and early adulthood are marked by the expansion and refinement of SA and MR hierarchies. While gradient topographies remain stable during late adulthood and aging, we observe decreases in global gradient measures of FC differentiation and complexity from 30 to 100 years. Examining cortical microstructure gradients alongside our functional gradients, we observed that structure-function gradient coupling undergoes differential lifespan trajectories across multiple gradient axes.

Modularity Measures of Functional Brain Networks Predict Individual Differences in Long-Term Memory

Long-term memory (LTM) is crucial to daily functioning, and individuals show a wide range in LTM capacity. In this study, we ask: How does the brain's functional organization explain individual differences in LTM? We focused on two important, widely studied forms of LTM, general recognition and recollection memory. Inspired by recent work on graph theory and modularity of the brain, we explored how modularity measures of brain activity during encoding could predict individual differences in later LTM performance. Specifically, we examined two modularity measures that describe distinct aspects of network functioning: diversity-the extent a node connects with different modules-and locality-the extent a node has more connections within its own modules. Combining modularity measures and connectome-predictive modeling (CPM), a powerful framework for predicting individual differences in behavior from brain functional connectivity, we found that diversity and locality measures together significantly predicted individual differences in both general recognition and recollection memory. Modularity-based predictions were less strong than CPM models using only connectivity features. With regard to predictive neuroanatomy, we found that the default mode network was the most consistently selected brain network across our models. Our findings extend previous work on how the modularity of the brain is related to cognition and demonstrate that successful LTM is supported by critical connector hubs coordinating between and within networks during encoding. More broadly, they demonstrate the utility of a graph-based approach to reveal how modularity of brain networks relates to individual differences in LTM.

Community modularity structure promotes the evolution of phase clusters and chimeralike states

Community modularity structure is widely observed across various brain scales, reflecting a balance between information processing efficiency and neural wiring metabolic efficiency. Revealing the relationship between community structure and brain function facilitates our further understanding of the brain. Here, we construct an adaptive neural network (ANN) consisting of leaky integrate-and-fire neurons with adaptivity governed by spike-time-dependent plasticity rules. The ANN demonstrates diverse dynamic collective behaviors, including traveling waves dominated by initial states, phase-cluster formations, and chimeralike states. In addition to functional clustering, ANN spontaneously organizes into community structures characterized by densely interconnected modules with sparse interconnections. Neurons within modules synchronize, while those across modules remain asynchronous, forming phase-cluster states. By encoding neural rhythms, the ANN segments into asynchronous and synchronous structural modules, leading to chimeralike states. These findings provide further evidence supporting the perspective that function emerges from structure and that structure is influenced by function in complex dynamic processes.

Hallmarks of Brain Plasticity

Cerebral plasticity is the ability of the brain to change and adapt in response to experience or learning. Its hallmarks are developmental flexibility, complex interactions between genetic and environmental influences, and structural-functional changes comprising neurogenesis, axonal sprouting, and synaptic remodeling. Studies on brain plasticity have important practical implications. The molecular characteristics of changes in brain plasticity may reveal disease course and the rehabilitative potential of the patient. Neurological disorders are linked with numerous cerebral non-coding RNAs (ncRNAs), in particular, microRNAs; the discovery of their essential role in gene regulation was recently recognized and awarded a Nobel Prize in Physiology or Medicine in 2024. Herein, we review the association of brain plasticity and its homeostasis with ncRNAs, which make them putative targets for RNA-based diagnostics and therapeutics. New insight into the concept of brain plasticity may provide additional perspectives on functional recovery following brain damage. Knowledge of this phenomenon will enable physicians to exploit the potential of cerebral plasticity and regulate eloquent networks with timely interventions. Future studies may reveal pathophysiological mechanisms of brain plasticity at macro- and microscopic levels to advance rehabilitation strategies and improve quality of life in patients with neurological diseases.

Binary and weighted network analysis and its applications to functional connectivity in subjective memory complaints: A resting-state fMRI approach

INTRODUCTION

Despite normal cognitive abilities, subjective memory complaints (SMC) are common in older adults and are linked to mild memory impairment. SMC may be a sign of subtle cognitive decline and underlying pathological changes, according to research; however, there is not enough data to support the use of resting-state functional connectivity to identify early changes in the brain network before cognitive symptoms manifest.

MATERIALS AND METHODS

In this study, the topological structure and regional connectivity of the brain functional network in SMC individuals were analyzed using graph theoretical analysis in both weighted and binarized network models, alongside healthy controls. Resting-state functional magnetic resonance imaging data was collected from 24 SMCs and 39 cognitively normal people. Analysis of both binary and weighted graph theory was done using the Dosenbach Atlas as a basis based on area under curves (AUCs) for the graph network parameters, which comprised of six node metrics and nine global measures. We then performed group comparisons using statistical analyses based on Network-Based Statistics functional connectomes. Finally, the relationship between global graph measures and cognition was examined using neuropsychological tests such as the Mini-Mental State Examination (MMSE) and the Alzheimer Disease Assessment Scale (ADAS score).

RESULTS

The topologic properties of brain functional connectomes at both global and nodal levels were tested. The SMC patients showed increased functional connectivity in clustering coefficient global (P < 0.00001), global efficiency (P < 0.00001), and normalized characteristic path length or Lambda (P < 0.00001), while there was decreased functional connectivity in Modularity (P < 0.04542), characteristic path length (0.00001), and small-worldness or Sigma (P < 0.00001) in binary networks model. In contrast, SMC patients only exhibited decreased functional connectivity in Assortativity identified by weighted networks model. Furthermore, some brain regions located in the default mode network, sensorimotor, occipital, and cingulo-opercular network in SMC patients showed altered nodal centralities. No significant correlation was found between global metrics and MMSE scores in both groups using binary metrics. However, in cognitively normal individuals, negative correlation was observed with weighted metrics in global and local efficiency and Lambda. While In SMC patients, a significant positive correlation was found between ADAS scores and local efficiency in both binary and weighted metrics.

CONCLUSION

The findings suggest that functional impairments in SMC patients might be associated with disruptions in the global and regional topological organization of the brain's functional connectome, offering new and significant insights into the pathophysiological mechanisms underlying SMC.

A Taxonomy of Neuroscientific Strategies Based on Interaction Orders

In recent decades, neuroscience has advanced with increasingly sophisticated strategies for recording and analysing brain activity, enabling detailed investigations into the roles of functional units, such as individual neurons, brain regions and their interactions. Recently, new strategies for the investigation of cognitive functions regard the study of higher order interactions-that is, the interactions involving more than two brain regions or neurons. Although methods focusing on individual units and their interactions at various levels offer valuable and often complementary insights, each approach comes with its own set of limitations. In this context, a conceptual map to categorize and locate diverse strategies could be crucial to orient researchers and guide future research directions. To this end, we define the spectrum of orders of interaction, namely, a framework that categorizes the interactions among neurons or brain regions based on the number of elements involved in these interactions. We use a simulation of a toy model and a few case studies to demonstrate the utility and the challenges of the exploration of the spectrum. We conclude by proposing future research directions aimed at enhancing our understanding of brain function and cognition through a more nuanced methodological framework.

Catalyst for change: Psilocybin's antidepressant mechanisms-A systematic review

BACKGROUND

Recent clinical trials suggest promising antidepressant effects of psilocybin, despite methodological challenges. While various studies have investigated distinct mechanisms and proposed theoretical opinions, a comprehensive understanding of psilocybin's neurobiological and psychological antidepressant mechanisms is lacking.

AIMS

Systematically review potential antidepressant neurobiological and psychological mechanisms of psilocybin.

METHODS

Search terms were generated based on existing evidence of psilocybin's effects related to antidepressant mechanisms. Following Preferred Reporting Items for Systematic Reviews and Meta-Analysis guidelines, 15 studies were systematically reviewed, exploring various therapeutic change principles such as brain dynamics, emotion regulation, cognition, self-referential processing, connectedness, and interpersonal functioning.

RESULTS

Within a supportive setting, psilocybin promoted openness, cognitive and neural flexibility, and greater ability and acceptance of emotional experiences. A renewed sense of connectedness to the self, others, and the world emerged as a key experience. Imaging studies consistently found altered brain dynamics, characterized by reduced global and within default mode network connectivity, alongside increased between-network connectivity.

CONCLUSIONS

Together, these changes may create a fertile yet vulnerable window for change, emphasizing the importance of a supportive set, setting, and therapeutic guidance. The results suggest that psilocybin, within a supportive context, may induce antidepressant effects by leveraging the interplay between neurobiological mechanisms and common psychotherapeutic factors. This complements the view of purely pharmacological effects, supporting a multileveled approach that reflects various relevant dimensions of therapeutic change, including neurobiological, psychological, and environmental factors.

Stable construction and analysis of MDD modular networks based on multi-center EEG data

BACKGROUND

The modular structure can reflect the activity pattern of the brain, and exploring it may help us understand the pathogenesis of major depressive disorder (MDD). However, little is known about how to build a stable modular structure in MDD patients and how modules are separated and integrated.

METHOD

We used four independent resting state Electroencephalography (EEG) datasets. Different coupling methods, window lengths, and optimized community detection algorithms were used to find a reliable and robust modular structure, and the module differences of MDD were analyzed from the perspectives of global module attributes and local topology in multiple frequency bands.

RESULTS

The combination of the Phase Lag Index (PLI) and the Louvain algorithm can achieve better results and can achieve stability at smaller window lengths. Compared with Healthy Controls (HC), MDD had higher Modularity (Q) values and the number of modules in low-frequency bands. In addition, MDD showed significant structural changes in the frontal and parietal-occipital lobes, which were confirmed by further correlation analysis.

CONCLUSION

Our results provided a reliable validation of the modular structure construction method in MDD patients and contributed strong evidence for the changes in emotional cognition and visual system function in MDD patients from a new perspective. These results would afford valuable insights for further exploration of the pathogenesis of MDD.

Dynamics of specialization in neural modules under resource constraints

The brain is structurally and functionally modular, although recent evidence has raised questions about the extent of both types of modularity. Using a simple, toy artificial neural network setup that allows for precise control, we find that structural modularity does not in general guarantee functional specialization (across multiple measures of specialization). Further, in this setup (1) specialization only emerges when features of the environment are meaningfully separable, (2) specialization preferentially emerges when the network is strongly resource-constrained, and (3) these findings are qualitatively similar across several different variations of network architectures. Finally, we show that functional specialization varies dynamically across time, and these dynamics depend on both the timing and bandwidth of information flow in the network. We conclude that a static notion of specialization is likely too simple a framework for understanding intelligence in situations of real-world complexity, from biology to brain-inspired neuromorphic systems.

Topological features of brain functional networks are reorganized during chronic tinnitus: A graph-theoretical study

This study aimed to investigate the topological properties of brain functional networks in patients with tinnitus of varying durations. A total of 51 tinnitus patients (divided into recent-onset tinnitus (ROT) and persistent tinnitus (PT) groups) and 27 healthy controls (HC) were recruited. All participants underwent resting-state functional MRI and audiological assessments. Graph theory was used to examine brain network topology. The results showed that the ROT group exhibited lower clustering coefficient, gamma, sigma and local efficiency compared to both the HC and PT groups (all P < 0.05). Significant reductions in nodal clustering coefficient and local efficiency were found in the left caudate nucleus and left olfactory cortex, while increased nodal centralities were observed in the left orbital middle frontal gyrus and left postcentral gyrus in ROT patients (all P < 0.05). Furthermore, the ROT group had decreased nodal clustering in the right lenticular putamen and reduced nodal efficiency in the left olfactory cortex compared to both PT patients and HCs (all P < 0.05). Additionally, PT patients showed weaker functional connectivity between the subcortical and occipital lobe modules, as well as between the prefrontal and intra-frontal modules, compared to ROT patients. However, intra-module connectivity in the subcortical module was stronger in PT patients than in HCs. These findings suggest that recent-onset tinnitus is associated with alterations in brain network topology, but many of these changes are restored with the persistence of tinnitus.

Low-dimensional controllability of brain networks

Identifying the driver nodes of a network has crucial implications in biological systems from unveiling causal interactions to informing effective intervention strategies. Despite recent advances in network control theory, results remain inaccurate as the number of drivers becomes too small compared to the network size, thus limiting the concrete usability in many real-life applications. To overcome this issue, we introduced a framework that integrates principles from spectral graph theory and output controllability to project the network state into a smaller topological space formed by the Laplacian network structure. Through extensive simulations on synthetic and real networks, we showed that a relatively low number of projected components can significantly improve the control accuracy. By introducing a new low-dimensional controllability metric we experimentally validated our method on N = 6134 human connectomes obtained from the UK-biobank cohort. Results revealed previously unappreciated influential brain regions, enabled to draw directed maps between differently specialized cerebral systems, and yielded new insights into hemispheric lateralization. Taken together, our results offered a theoretically grounded solution to deal with network controllability and provided insights into the causal interactions of the human brain.

Contextualizing predictive minds

The structure of human memory seems to be optimized for efficient prediction, planning, and behavior. We propose that these capacities rely on a tripartite structure of memory that includes concepts, events, and contexts-three layers that constitute the mental world model. We suggest that the mechanism that critically increases adaptivity and flexibility is the tendency to contextualize. This tendency promotes local, context-encoding abstractions, which focus event- and concept-based planning and inference processes on the task and situation at hand. As a result, cognitive contextualization offers a solution to the frame problem-the need to select relevant features of the environment from the rich stream of sensorimotor signals. We draw evidence for our proposal from developmental psychology and neuroscience. Adopting a computational stance, we present evidence from cognitive modeling research which suggests that context sensitivity is a feature that is critical for maximizing the efficiency of cognitive processes. Finally, we turn to recent deep-learning architectures which independently demonstrate how context-sensitive memory can emerge in a self-organized learning system constrained by cognitively-inspired inductive biases.

Cortical Morphological Networks Differ Between Gyri and Sulci

This study explored how the human cortical folding pattern composed of convex gyri and concave sulci affected single-subject morphological brain networks, which are becoming an important method for studying the human brain connectome. We found that gyri-gyri networks exhibited higher morphological similarity, lower small-world parameters, and lower long-term test-retest reliability than sulci-sulci networks for cortical thickness- and gyrification index-based networks, while opposite patterns were observed for fractal dimension-based networks. Further behavioral association analysis revealed that gyri-gyri networks and connections between gyral and sulcal regions significantly explained inter-individual variance in Cognition and Motor domains for fractal dimension- and sulcal depth-based networks. Finally, the clinical application showed that only sulci-sulci networks exhibited morphological similarity reductions in major depressive disorder for cortical thickness-, fractal dimension-, and gyrification index-based networks. Taken together, these findings provide novel insights into the constraint of the cortical folding pattern to the network organization of the human brain.

Regression and alignment for functional data and network topology

In the brain, functional connections form a network whose topological organization can be described by graph-theoretic network diagnostics. These include characterizations of the community structure, such as modularity and participation coefficient, which have been shown to change over the course of childhood and adolescence. To investigate if such changes in the functional network are associated with changes in cognitive performance during development, network studies often rely on an arbitrary choice of preprocessing parameters, in particular the proportional threshold of network edges. Because the choice of parameter can impact the value of the network diagnostic, and therefore downstream conclusions, we propose to circumvent that choice by conceptualizing the network diagnostic as a function of the parameter. As opposed to a single value, a network diagnostic curve describes the connectome topology at multiple scales-from the sparsest group of the strongest edges to the entire edge set. To relate these curves to executive function and other covariates, we use scalar-on-function regression, which is more flexible than previous functional data-based models used in network neuroscience. We then consider how systematic differences between networks can manifest in misalignment of diagnostic curves, and consequently propose a supervised curve alignment method that incorporates auxiliary information from other variables. Our algorithm performs both functional regression and alignment via an iterative, penalized, and nonlinear likelihood optimization. The illustrated method has the potential to improve the interpretability and generalizability of neuroscience studies where the goal is to study heterogeneity among a mixture of function- and scalar-valued measures.

Reorganization of Dynamic Network in Stroke Patients and Its Potential for Predicting Motor Recovery

Objective: The investigation of brain functional network dynamics offers a promising approach to understanding network reorganization poststroke. This study aims to explore the dynamic network configurations associated with motor recovery in stroke patients and assess their predictive potential using multilayer network analysis. Methods: Resting-state functional magnetic resonance imaging data were collected from patients with subacute stroke within 2 weeks of onset and from matched healthy controls (HCs). Group-independent component analysis and a sliding window approach were utilized to construct dynamic functional networks. A multilayer network model was applied to quantify the switching rates of individual nodes, subnetworks, and the global network across the dynamic network. Correlation analyses assessed the relationship between switching rates and motor function recovery, while linear regression models evaluated the predictive potential of global network switching rate on motor recovery outcomes. Results: Stroke patients exhibited a significant increase in the switching rates of specific brain regions, including the medial frontal gyrus, precentral gyrus, inferior parietal lobule, anterior cingulate, superior frontal gyrus, and postcentral gyrus, compared to HCs. Additionally, elevated switching rates were observed in the frontoparietal network, default mode network, cerebellar network, and in the global network. These increased switching rates were positively correlated with baseline Fugl-Meyer assessment (FMA) scores and changes in FMA scores at 90 days poststroke. Importantly, the global network's switching rate emerged as a significant predictor of motor recovery in stroke patients. Conclusions: The reorganization of dynamic network configurations in stroke patients reveals crucial insights into the mechanisms of motor recovery. These findings suggest that metrics of dynamic network reorganization, particularly global network switching rate, may offer a robust predictor of motor recovery.

dFCExpert: Learning Dynamic Functional Connectivity Patterns with Modularity and State Experts

Characterizing brain dynamic functional connectivity (dFC) patterns from functional Magnetic Resonance Imaging (fMRI) data is of paramount importance in neuroscience and medicine. Recently, many graph neural network (GNN) models, combined with transformers or recurrent neural networks (RNNs), have shown great potential for modeling the dFC patterns. However, these methods face challenges in effectively characterizing the modularity organization of brain networks and capturing varying dFC state patterns. To address these limitations, we propose dFCExpert, a novel method designed to learn robust representations of dFC patterns in fMRI data with modularity experts and state experts. Specifically, the modularity experts optimize multiple experts to characterize the brain modularity organization during graph feature learning process by combining GNN and mixture of experts (MoE), with each expert focusing on brain nodes within the same functional network module. The state experts aggregate temporal dFC features into a set of distinctive connectivity states using a soft prototype clustering method, providing insight into how these states support different brain activities or are differentially affected by brain disorders. Experiments on two large-scale fMRI datasets demonstrate the superiority of our method over existing alternatives. The learned dFC representations not only show improved interpretability but also hold promise for enhancing clinical diagnosis. The code can be accessed at MLDataAnalytics/dFCExpert on GitHub.

Diverging network architecture of the C. elegans connectome and signaling network

The connectome describes the complete set of synaptic contacts through which neurons communicate. While the architecture of the C. elegans connectome has been extensively characterized, much less is known about the organization of causal signaling networks arising from functional interactions between neurons. Understanding how effective communication pathways relate to or diverge from the underlying structure is a central question in neuroscience. Here, we analyze the modular architecture of the C. elegans signal propagation network, measured via calcium imaging and optogenetics, and compare it to the underlying anatomical wiring measured by electron microscopy. Compared to the connectome, we find that signaling modules are not aligned with the modular boundaries of the anatomical network, highlighting an instance where function deviates from structure. An exception to this is the pharynx which is delineated into a separate community in both anatomy and signaling. We analyze the cellular compositions of the signaling architecture and find that its modules are enriched for specific cell types and functions, suggesting that the network modules are neurobiologically relevant. Lastly, we identify a "rich club" of hub neurons in the signaling network. The membership of the signaling rich club differs from the rich club detected in the anatomical network, challenging the view that structural hubs occupy positions of influence in functional (signaling) networks. Our results provide new insight into the interplay between brain structure, in the form of a complete synaptic-level connectome, and brain function, in the form of a system-wide causal signal propagation atlas.

A generative model of the connectome with dynamic axon growth

Connectome generative models, otherwise known as generative network models, provide insight into the wiring principles underpinning brain network organization. While these models can approximate numerous statistical properties of empirical networks, they typically fail to explicitly characterize an important contributor to brain organization-axonal growth. Emulating the chemoaffinity-guided axonal growth, we provide a novel generative model in which axons dynamically steer the direction of propagation based on distance-dependent chemoattractive forces acting on their growth cones. This simple dynamic growth mechanism, despite being solely geometry-dependent, is shown to generate axonal fiber bundles with brain-like geometry and features of complex network architecture consistent with the human brain, including lognormally distributed connectivity weights, scale-free nodal degrees, small-worldness, and modularity. We demonstrate that our model parameters can be fitted to individual connectomes, enabling connectome dimensionality reduction and comparison of parameters between groups. Our work offers an opportunity to bridge studies of axon guidance and connectome development, providing new avenues for understanding neural development from a computational perspective.

Predicting modular functions and neural coding of behavior from a synaptic wiring diagram

A long-standing goal in neuroscience is to understand how a circuit's form influences its function. Here, we reconstruct and analyze a synaptic wiring diagram of the larval zebrafish brainstem to predict key functional properties and validate them through comparison with physiological data. We identify modules of strongly connected neurons that turn out to be specialized for different behavioral functions, the control of eye and body movements. The eye movement module is further organized into two three-block cycles that support the positive feedback long hypothesized to underlie low-dimensional attractor dynamics in oculomotor control. We construct a neural network model based directly on the reconstructed wiring diagram that makes predictions for the cellular-resolution coding of eye position and neural dynamics. These predictions are verified statistically with calcium imaging-based neural activity recordings. This work demonstrates how connectome-based brain modeling can reveal previously unknown anatomical structure in a neural circuit and provide insights linking network form to function.

Changes in Functional and Structural Brain Connectivity Following Bilateral Hand Transplantation

As a surgical treatment following amputation or loss of an upper limb, nearly 200 hand transplantations have been completed to date. We report here a magnetic resonance imaging (MRI) investigation of functional and structural brain connectivity for a bilateral hand transplant patient (female, 60 years of age), with a preoperative baseline and three postoperative testing sessions each separated by approximately six months. We used graph theoretical analyses to estimate connectivity within and between modules (networks of anatomical nodes), particularly a sensorimotor network (SMN), from resting-state functional MRI and structural diffusion-weighted imaging (DWI). For comparison, corresponding MRI measures of connectivity were obtained from 10 healthy, age-matched controls, at a single testing session. The patient's within-module functional connectivity (both SMN and non-SMN modules), and structural within-SMN connectivity, were higher preoperatively than that of the controls, indicating a response to amputation. Postoperatively, the patient's within-module functional connectivity decreased towards the control participants' values, across the 1.5 years postoperatively, particularly for hand-related nodes within the SMN module, suggesting a return to a more canonical functional organization. Whereas the patient's structural connectivity values remained relatively constant postoperatively, some evidence suggested that structural connectivity supported the postoperative changes in within-module functional connectivity.

The impact of EEG electrode density on the mapping of cortical activity networks in infants

OBJECTIVE

Electroencephalography (EEG) is widely used for assessing infant's brain activity, and multi-channel recordings support studies on functional cortical networks. Here, we aimed to assess how the number of recording electrodes affects the quality and level of details accessible in studying infant's cortical networks.

METHODS

Dense array EEG recordings with 124 channels from N=20 infants were used as the reference, and lower electrode numbers were subsampled to simulate recording setups with 63, 31, and 19 electrodes, respectively. Cortical activity networks were computed for each recording setup and different frequencies using amplitude and phase correlation measures. The effects of the recording setup were systematically assessed on global, nodal, and edge levels.

RESULTS

Compared to the reference 124-channel recording setup, lowering electrode density affected network measures in a modality- and frequency-specific manner. The global network features were essentially comparable with 63 or 31 channels. However, the analytic reliability of the local network measures, both at nodal and edge levels, was proportional to the electrode density. The low-frequency amplitude correlations were most robust to the number of recording electrodes, whereas higher frequency phase correlation networks were most sensitive to the density of recording electrodes.

CONCLUSIONS

Our findings suggest strong and predictable effects of recording setup on the network analyses. Higher electrode number supports studies on networks with phase correlations, higher frequency, and finer spatial details.

SIGNIFICANCE

The relationship between the recording setup and reliability of network analyses is essential for the prospective design of research data collection, as well as for guiding analytic strategies when using already collected EEG data from infants.

Functional Segregation-Integration Preference Configures the Cognitive Decline Against Cerebral Small Vessel Disease: An MRI Study

INTRODUCTION

Cerebral small vessel disease (CSVD) is highly prevalent in elder individuals, and its variable cognitive outcomes indicate some cognitive reserve mechanisms. Contribution from functional network features is still unclear. Here we explore how functional segregation-integration preference influences the cognitive changes against CSVD.

MATERIALS AND METHODS

A total of, 271 CSVD patients were included, all underwent MRI scans including routine and resting-state functional MRI (rs-fMRI). Hierarchical balance index (HB) was obtained from the rs-fMRI connectivity using eigenmode-based approach. Individuals were classified into segregated and integrated groups according to negative and positive HB. A composite CSVD lesion score was calculated from imaging findings. Global and five specific cognitive functions were assessed.

RESULTS

Hierarchical regression analysis revealed negative contribution from lesion load to global and all cognitive domains (β = -0.22~-0.35, ∆R2 = 0.046~0.112, all p < 0.001). Inclusion of HB did not show significant contribution (all p > 0.05), but interaction between HB and lesion score was significantly associated with global (β = -0.27, ∆R2 = 0.013, p = 0.034) and execution score (β = -0.34, ∆R2 = 0.023, p = 0.002). Integrated patients show significant better global cognitive (23.9 ± 3.9 vs. 25.5 ± 3.1, p = 0.044) and executive ability (0.235 ± 0.678 vs. 0.535 ± 0.688, p = 0.049) at mild damage stage, visuospatial (-0.001 ± 0.804 vs. 0.379 ± 0.249, p = 0.034) and language ability (-0.133 ± 0.849 vs. 0.218 ± 0.704, p = 0.037) at moderate damage stage. Cross-overs of cognitive scores were observed. Significant better execution (-0.277 ± 0.717 vs. -0.675 ± 0.883, p = 0.027) was found in severe damage stage for segregated patients.

CONCLUSION

Thus, we concluded that integrated network contributes to cognitive resilience in mild and moderate but not in severe damage stages.

Age-related decline in cognitive flexibility and inadequate preparation: evidence from task-state network analysis

Behavioral evidence showed decreased cognitive flexibility in older adults. However, task-based network mechanisms of cognitive flexibility in aging (CFA) remain unclear. Here, we provided the first task-state network evidence that CFA was associated with inadequate preparation for switching trials by revealing age-related changes in functional integration. We examined functional integration in a letter-number switch task that distinguished between the cue and target stages. Both young and older adults showed decreased functional integration from the cue stage to the target stage, indicating that control-related processes were executed as the task progressed. However, compared to young adults, older adults showed less cue-to-target reduction in functional integration, which was primarily driven by higher network integration in the target stage. Moreover, less cue-to-target reductions were correlated with age-related decreases in task performance in the switch task. To sum up, compared to young adults, older adults pre-executed less control-related processes in the cue stage and more control-related processes in the target stage. Therefore, the decline in cognitive flexibility in older adults was associated with inadequate preparation for the impending demands of cognitive switching. This study offered novel insights into network mechanisms underlying CFA. Furthermore, we highlighted that training the function of brain networks, in conjunction with providing more preparation time for older adults, may be beneficial to their cognitive flexibility.

Trade-offs among brain structural network characteristics across the cognitive decline process in cerebral small vessel disease

Objectives

To investigate the potential trade-offs among brain structural network characteristics across different stages of cognitive impairment in cerebral small vessel disease (CSVD) based on diffusion tensor imaging (DTI).

Methods

A total of 264 CSVD patients, including 95 patients with non-cognitive impairment (NCI), 142 with mild cognitive impairment (MCI), 27 with vascular dementia (VaD), and 30 healthy controls (HC) underwent cognitive test and brain diffusion magnetic resonance imaging (MRI). The brain structural network was constructed using connections between 90 cortical and subcortical regions. Network characteristics, including sparsity, redundancy, global efficiency (Eg), and local efficiency (Eloc), were calculated.

Results

Sparsity and redundancy significantly declined in the NCI group compared to the HC group. Eg was significantly reduced in the MCI group compared to the NCI group. All network characteristics declined in the VaD group compared to the MCI group. In the NCI group, both sparsity and redundancy were significantly positively correlated with Montreal Cognitive Assessment (MoCA). In the MCI group, there was significant positive correlation between Eg and MoCA. In the VaD group, there was significant negative correlation between Eloc and MoCA. When controlling for sparsity, Eloc exhibited a significant negative correlation with Eg in all three CSVD groups, while redundancy displayed a significant negative correlation with Eg specifically in MCI group.

Conclusion

Our study provides evidence for the heterogeneous alterations in brain structural network across different stages of cognitive impairment in CSVD. The disconnection of brain structural network at NCI stage is mainly the loss of redundant connections. The decline of Eg is the vital factor for cognitive impairment at MCI stage. The decline of all network characteristics is the prominent manifestation at VaD stage. Throughout the cognitive decline process in CSVD, there are trade-offs among the brain network wiring cost, integration, and segregation.

Segregation of the regional radiomics similarity network exhibited an increase from late childhood to early adolescence: A developmental investigation

Brain development is characterized by an increase in structural and functional segregation, which supports the specialization of cognitive processes within the context of network neuroscience. In this study, we investigated age-related changes in morphological segregation using individual Regional Radiomics Similarity Networks (R2SNs) constructed with a longitudinal dataset of 494 T1-weighted MR scans from 309 typically developing children aged 6.2 to 13 years at baseline. Segertation indices were defined as the relative difference in connectivity strengths within and between modules and cacluated at the global, system and local levels. Linear mixed-effect models revealed longitudinal increases in both global and system segregation indices, particularly within the limbic and dorsal attention network, and decreases within the ventral attention network. Superior performance in working memory and inhibitory control was associated with higher system-level segregation indices in default, frontoparietal, ventral attention, somatomotor and subcortical systems, and lower local segregation indices in visual network regions, regardless of age. Furthermore, gene enrichment analysis revealed correlations between age-related changes in local segregation indices and regional expression levels of genes related to developmental processes. These findings provide novel insights into typical brain developmental changes using R2SN-derived segregation indices, offering a valuable tool for understanding human brain structural and cognitive maturation.

No sex difference in maturation of brain morphology during the perinatal period

Accumulating evidence have documented sex differences in brain anatomy from early childhood to late adulthood. However, whether sex difference of brain structure emerges in the neonatal brain and how sex modulates the development of cortical morphology during the perinatal stage remains unclear. Here, we utilized T2-weighted MRI from the Developing Human Connectome Project (dHCP) database, consisting of 41 male and 40 female neonates born between 35 and 43 postmenstrual weeks (PMW). Neonates of each sex were arranged in a continuous ascending order of age to capture the progressive changes in cortical thickness and curvature throughout the developmental continuum. The maturational covariance network (MCN) was defined as the coupled developmental fluctuations of morphology measures between cortical regions. We constructed MCNs based on the two features, respectively, to illustrate their developmental interdependencies, and then compared the network topology between sexes. Our results showed that cortical structural development exhibited a localized pattern in both males and females, with no significant sex differences in the developmental trajectory of cortical morphology, overall organization, nodal importance, and modular structure of the MCN. Furthermore, by merging male and female neonates into a unified cohort, we identified evident dependencies influences in structural development between different brain modules using the Granger causality analysis (GCA), emanating from high-order regions toward primary cortices. Our findings demonstrate that the maturational pattern of cortical morphology may not differ between sexes during the perinatal period, and provide evidence for the developmental causality among cortical structures in perinatal brains.

Adaptive rewiring: a general principle for neural network development

The nervous system, especially the human brain, is characterized by its highly complex network topology. The neurodevelopment of some of its features has been described in terms of dynamic optimization rules. We discuss the principle of adaptive rewiring, i.e., the dynamic reorganization of a network according to the intensity of internal signal communication as measured by synchronization or diffusion, and its recent generalization for applications in directed networks. These have extended the principle of adaptive rewiring from highly oversimplified networks to more neurally plausible ones. Adaptive rewiring captures all the key features of the complex brain topology: it transforms initially random or regular networks into networks with a modular small-world structure and a rich-club core. This effect is specific in the sense that it can be tailored to computational needs, robust in the sense that it does not depend on a critical regime, and flexible in the sense that parametric variation generates a range of variant network configurations. Extreme variant networks can be associated at macroscopic level with disorders such as schizophrenia, autism, and dyslexia, and suggest a relationship between dyslexia and creativity. Adaptive rewiring cooperates with network growth and interacts constructively with spatial organization principles in the formation of topographically distinct modules and structures such as ganglia and chains. At the mesoscopic level, adaptive rewiring enables the development of functional architectures, such as convergent-divergent units, and sheds light on the early development of divergence and convergence in, for example, the visual system. Finally, we discuss future prospects for the principle of adaptive rewiring.

Sex Differences in Hierarchical and Modular Organization of Functional Brain Networks: Insights from Hierarchical Entropy and Modularity Analysis

Existing studies have demonstrated significant sex differences in the neural mechanisms of daily life and neuropsychiatric disorders. The hierarchical organization of the functional brain network is a critical feature for assessing these neural mechanisms. But the sex differences in hierarchical organization have not been fully investigated. Here, we explore whether the hierarchical structure of the brain network differs between females and males using resting-state fMRI data. We measure the hierarchical entropy and the maximum modularity of each individual, and identify a significant negative correlation between the complexity of hierarchy and modularity in brain networks. At the mean level, females show higher modularity, whereas males exhibit a more complex hierarchy. At the consensus level, we use a co-classification matrix to perform a detailed investigation of the differences in the hierarchical organization between sexes and observe that the female group and the male group exhibit different interaction patterns of brain regions in the dorsal attention network (DAN) and visual network (VIN). Our findings suggest that the brains of females and males employ different network topologies to carry out brain functions. In addition, the negative correlation between hierarchy and modularity implies a need to balance the complexity in the hierarchical organization of the brain network, which sheds light on future studies of brain functions.

Shaping dynamical neural computations using spatiotemporal constraints

Dynamics play a critical role in computation. The principled evolution of states over time enables both biological and artificial networks to represent and integrate information to make decisions. In the past few decades, significant multidisciplinary progress has been made in bridging the gap between how we understand biological versus artificial computation, including how insights gained from one can translate to the other. Research has revealed that neurobiology is a key determinant of brain network architecture, which gives rise to spatiotemporally constrained patterns of activity that underlie computation. Here, we discuss how neural systems use dynamics for computation, and claim that the biological constraints that shape brain networks may be leveraged to improve the implementation of artificial neural networks. To formalize this discussion, we consider a natural artificial analog of the brain that has been used extensively to model neural computation: the recurrent neural network (RNN). In both the brain and the RNN, we emphasize the common computational substrate atop which dynamics occur-the connectivity between neurons-and we explore the unique computational advantages offered by biophysical constraints such as resource efficiency, spatial embedding, and neurodevelopment.