1
|
Zhang H, Dong S, Shan H, Yang C, Wang F. Application of the DEB-TKTD model with multi-omics data: Prediction of life history traits of Chinese mitten crab (Eriocheir sinensis) under different salinities. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2025; 290:117635. [PMID: 39742640 DOI: 10.1016/j.ecoenv.2024.117635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 12/26/2024] [Accepted: 12/27/2024] [Indexed: 01/03/2025]
Abstract
Saline-alkaline aquaculture plays a crucial role in the ecological restoration of saline soils, yet high water salinity can significantly restrict the growth of cultured organisms. The Chinese mitten crab (Eriocheir sinensis) is typically farmed in freshwater, to evaluate the effects of salinity stress on these crabs, this study conducted laboratory aquaculture experiments at salinities of ≤ 0.5 (freshwater), 6, 12, and 18 ‰. Regular data on crab survival and growth were collected over 35 days. Subsequently, tissues including the eyestalk, posterior gill, hepatopancreas, and ovary were sampled from crabs in both the freshwater control group and the 18 ‰ salinity treatment group for transcriptional and metabolomic analysis. The omics data were used to ascertain the physiological mode of action (pMoA) affected by salinity in the crabs. A dynamic energy budget toxicokinetic-toxicodynamic (DEB-TKTD) model was built based on these pMoAs to predict the life history traits of crabs across different salinities, including survival, growth, and reproduction. The omics results indicated that at 18 ‰, the osmoregulatory capacity and oxidative stress resistance were enhanced, and vitellogenin synthesis was stimulated. This suggests that the two pMoAs involved increasing maintenance costs and reallocating energy between soma and reproduction. DEB-TKTD model predictions fit well with the observed data, with high R2 values (0.9704 for survival, 0.9842 for carapace width, and 0.9283 for reproduction) and low NRMSE (0.0093, 0.1175, and 0.0778, respectively). The predictions indicate that after 60 days, survival rates under salinities of 6, 12, and 18 ‰ decreased by 35.7 %, 56.7 %, and 66.2 %, respectively, compared to freshwater conditions. Growth in carapace width was similarly affected, with reductions of 21.5 %, 42.3 %, and 62.5 %, respectively. The maturation process was accelerated for crabs in saline conditions, with puberty achieved at 45, 36, and 31 days, compared to the freshwater group that had not matured. Furthermore, the LC50 for salinity decreased from 9.07 ‰ (95 % CI: 7.33-10.15 ‰) at 35 days to 4.59 ‰ (95 % CI: 3.12-5.83 ‰) at 60 days. The findings of this study indicate the significant impact of salinity on the survival, growth, and maturation of Chinese mitten crabs by altering maintenance costs and energy allocation. The DEB-TKTD model, informed by omics data, accurately predicts the life history traits of crabs under saline stress. This approach provides an innovative tool for ecological toxicological research in the aquaculture environment.
Collapse
Affiliation(s)
- Hanzun Zhang
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, Shandong 266003, China
| | - Shipeng Dong
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, Shandong 266003, China
| | - Hongwei Shan
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, Shandong 266003, China
| | - Chao Yang
- Faculty of Information Science and Engineering, Ocean University of China, Qingdao, Shandong 266100, China.
| | - Fang Wang
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao, Shandong 266003, China; Function Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong 266237, China.
| |
Collapse
|
2
|
Overduin SL, Killen SS, Zimmer AM, McCuaig JD, Cotgrove L, Aragao I, Rozanitis KJ, Konhauser KO, Alessi DS, Blewett TA. Social context affects tissue-specific copper distribution and behaviour of threespine stickleback (Gasterosteus aculeatus). ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2025; 289:117432. [PMID: 39642649 DOI: 10.1016/j.ecoenv.2024.117432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Revised: 11/20/2024] [Accepted: 11/26/2024] [Indexed: 12/09/2024]
Abstract
Many species exhibit social living which offers ecological advantages such as increased foraging opportunities, more efficient locomotion and reduced predation risk. Additionally, exposure to multiple individuals of the same species can decrease an individual's stress and metabolic demand, termed social buffering. If disruption to an animal's social structure occurs and prevents social buffering, an elevated metabolic rate and thus ventilation frequency and gill permeability are likely. A potential consequence of this physiological response could be the increased accumulation of toxicants. The objective of this study was to investigate whether inducing social stress in marine threespine stickleback (Gasterosteus aculeatus) through social isolation during a sublethal water-borne copper (Cu) exposure would affect Cu uptake and whether that would translate to differences in behaviour and biochemical functioning. We hypothesized that isolating threespine stickleback during a Cu exposure would increase Cu uptake and sublethal toxicity compared to a grouped exposure. Wild-caught fish were exposed to control, low Cu or high Cu conditions (0 - 150 µg/L of Cu, nominally), either in isolation or groups of six for 96 h. Isolated stickleback travelled three times less distance, took six times longer to consume food and exhibited moderately increased gill sodium-potassium ATPase activity than group exposed fish, with no effect of Cu. Isolated stickleback also demonstrated significantly higher Cu levels in their gill and liver tissue compared to the group exposed fish. However, this Cu distribution was also present within the control fish, which had not been exposed to Cu, suggesting that the social context affects endogenous Cu distribution under stressful conditions. Our results illustrate the differences in physiology and behaviour that can arise when social contexts are manipulated and stress the importance of considering sociality when conducting toxicity tests with social organisms.
Collapse
Affiliation(s)
- Sienna L Overduin
- Department of Biological Sciences, University of Alberta, Edmonton T6G 2E9, Canada; Bamfield Marine Sciences Centre, Bamfield, BC V0R 1B0, Canada.
| | - Shaun S Killen
- School of Biodiversity, One Health, and Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom
| | - Alex M Zimmer
- Department of Biological Sciences, University of Alberta, Edmonton T6G 2E9, Canada
| | - Jenelle D McCuaig
- Department of Biological Sciences, University of Alberta, Edmonton T6G 2E9, Canada; Bamfield Marine Sciences Centre, Bamfield, BC V0R 1B0, Canada
| | - Lucy Cotgrove
- School of Biodiversity, One Health, and Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom
| | - Isabel Aragao
- Department of Biological Sciences, University of Alberta, Edmonton T6G 2E9, Canada; Bamfield Marine Sciences Centre, Bamfield, BC V0R 1B0, Canada
| | - Kelly J Rozanitis
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton T6G 2E3, Canada
| | - Kurt O Konhauser
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton T6G 2E3, Canada
| | - Daniel S Alessi
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton T6G 2E3, Canada
| | - Tamzin A Blewett
- Department of Biological Sciences, University of Alberta, Edmonton T6G 2E9, Canada; Bamfield Marine Sciences Centre, Bamfield, BC V0R 1B0, Canada
| |
Collapse
|
3
|
Leprêtre M, Degli Esposti D, Sugier K, Espeyte A, Gaillard JC, Delorme N, Duflot A, Bonnard I, Coulaud R, Boulangé-Lecomte C, Xuereb B, Palos Ladeiro M, Geffard A, Geffard O, Armengaud J, Chaumot A. Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species. Sci Data 2023; 10:643. [PMID: 37735452 PMCID: PMC10514328 DOI: 10.1038/s41597-023-02545-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 09/05/2023] [Indexed: 09/23/2023] Open
Abstract
Proteogenomic methodologies have enabled the identification of protein sequences in wild species without annotated genomes, shedding light on molecular mechanisms affected by pollution. However, proteomic resources for sentinel species are limited, and organ-level investigations are necessary to expand our understanding of their molecular biology. This study presents proteomic resources obtained from proteogenomic analyses of key organs (hepatopancreas, gills, hemolymph) from three established aquatic sentinel invertebrate species of interest in ecotoxicological/ecological research and environmental monitoring: Gammarus fossarum, Dreissena polymorpha, and Palaemon serratus. Proteogenomic analyses identified thousands of proteins for each species, with over 90% of them being annotated to putative function. Functional analysis validated the relevance of the proteomic atlases by revealing similarities in functional annotation of catalogues of proteins across analogous organs in the three species, while deep contrasts between functional profiles are delimited across different organs in the same organism. These organ-level proteomic atlases are crucial for future research on these sentinel animals, aiding in the evaluation of aquatic environmental risks and providing a valuable resource for ecotoxicological studies.
Collapse
Affiliation(s)
- Maxime Leprêtre
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France.
| | - Davide Degli Esposti
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Kevin Sugier
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Anabelle Espeyte
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Jean-Charles Gaillard
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, F-30200, Bagnols-sur-Cèze, France
| | - Nicolas Delorme
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Aurélie Duflot
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Isabelle Bonnard
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, UFR Sciences Exactes et Naturelles, Campus Moulin de la Housse, BP 1039, 51687, Reims, France
| | - Romain Coulaud
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Céline Boulangé-Lecomte
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Benoît Xuereb
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Mélissa Palos Ladeiro
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, UFR Sciences Exactes et Naturelles, Campus Moulin de la Housse, BP 1039, 51687, Reims, France
| | - Alain Geffard
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, UFR Sciences Exactes et Naturelles, Campus Moulin de la Housse, BP 1039, 51687, Reims, France
| | - Olivier Geffard
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Jean Armengaud
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, F-30200, Bagnols-sur-Cèze, France
| | - Arnaud Chaumot
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France.
| |
Collapse
|
4
|
An S, Yan Z, Song Y, Fu Q, Ge F, Wu Z, An W, Han W. Decoupling of N and P aggravated upward along food chains in an urban river ecosystem. CHEMOSPHERE 2023; 313:137555. [PMID: 36526137 DOI: 10.1016/j.chemosphere.2022.137555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 12/01/2022] [Accepted: 12/11/2022] [Indexed: 06/17/2023]
Abstract
Anthropogenic input of nutrient has profoundly influenced water quality and aquatic organisms, however, large and unbalanced nitrogen (N) and phosphorus (P) inputs (decoupling) can lead to a range of ecological health problems such as eutrophication. Whether and how the decoupling varies along the aquatic food chain remains poorly addressed. Here we chose an urban river ecosystem in the cosmopolis region of Beijing, with reclaimed water as the entire replenishment water source over 20 years, to demonstrate the decoupling pattern of N vs P across trophic levels. Results showed that organism C, N and P concentration increased, but N:P ratio decreased upward along the food chains, suggesting that this decoupling of N and P increased as trophic level ascends. Compared with natural freshwater ecosystem, the decoupling of N and P was aggravated in the reclaimed water river. Moreover, the homeostasis of N and P were higher at higher relative to lower trophic levels, and higher in macro-food chain relative to planktonic food chain. This study, for the first time, revealed the increasing decoupling of N vs P upward along the major food chains in an urban aquatic ecosystem, and could improve the understanding of nutrient cycling at the food chain level under human disturbance, and provide useful information for ecological restoration and eutrophication control of urban wetlands replenished with reclaimed water.
Collapse
Affiliation(s)
- Shenqun An
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Zhengbing Yan
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Ying Song
- Beijing Drainage Group Co., Ltd, Beijing, 100124, China
| | - Qiang Fu
- Beijing Drainage Group Co., Ltd, Beijing, 100124, China
| | - Feiyang Ge
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Zehao Wu
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Wei An
- Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Wenxuan Han
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China.
| |
Collapse
|
5
|
Responses of Micropterus salmoides under Ammonia Stress and the Effects of a Potential Ammonia Antidote. Animals (Basel) 2023; 13:ani13030397. [PMID: 36766286 PMCID: PMC9913073 DOI: 10.3390/ani13030397] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 01/14/2023] [Accepted: 01/16/2023] [Indexed: 01/26/2023] Open
Abstract
Ammonia is a common environmental limiting factor in aquaculture. To investigate the effects of ammonia stress and explore the protective effect of N-carbamylglutamate (NCG) on Micropterus salmoides (M. salmoides), tissue sections and parameters related to oxidative stress and the inflammatory response in M. salmoides were carried out during the ammonia stress test and feeding test. The results demonstrated that the LC50 for 24 h, 48 h, 72 h, and 96 h under ammonia stress in M. salmoides were 25.78 mg/L, 24.40 mg/L, 21.90 mg/L, and 19.61 mg/L, respectively. Under ammonia stress, the structures of the tissues were damaged, and the GSH content decreased, while the MDA content increased with the increase in stress time and ammonia concentration. The NO content fluctuated significantly after the ammonia nitrogen stress. In the 15-day feeding test, with the increased NCG addition amount and feeding time, the GSH content increased while the MDA and NO contents decreased gradually in the NCG addition groups (NL group: 150 mg/kg; NM group: 450 mg/kg; NH group: 750 mg/kg) when compared with their control group (CK group: 0 mg/kg). In the ammonia toxicology test after feeding, the damage to each tissue was alleviated in the NL, NM, and NH groups, and the contents of GSH, MDA, and NO in most tissues of the NH group were significantly different from those in the CK group. The results suggested that ammonia stress caused tissue damage in M. salmoides, provoking oxidative stress and inflammatory response. The addition of NCG to the feed enhances the anti-ammonia ability of M. salmoides. Moreover, the gill and liver might be the target organs of ammonia toxicity, and the brain and kidney might be the primary sites where NCG exerts its effects. Our findings could help us to find feasible ways to solve the existing problem of environmental stress in M. salmoides culture.
Collapse
|
6
|
Gonçalves AT, Llanos-Rivera A, Ruano M, Avello V, Gallardo-Rodriguez JJ, Astuya-Villalón A. Physiological Response of Atlantic Salmon ( Salmo salar) to Long-Term Exposure to an Anesthetic Obtained from Heterosigma akashiwo. Toxins (Basel) 2022; 14:575. [PMID: 36006237 PMCID: PMC9416519 DOI: 10.3390/toxins14080575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 08/08/2022] [Accepted: 08/15/2022] [Indexed: 11/16/2022] Open
Abstract
Despite the invaluable role of anesthetics as a tool for ensuring animal welfare in stressful situations, there is currently a lack of anesthetic drugs that meet the requirements of intensive aquaculture. In response to the growing interest in anesthetic substances of natural origin, this study evaluated the physiological and health impact of an anesthetic based on an extract of the microalga Heterosigma akashiwo on juvenile salmon (Salmo salar) exposed for a period of 72 h. To simulate a condition closer to reality where fish are subjected to stimuli (e.g., transport), the animals were exposed to 50 mg L-1 of algal extract and to physical stress. Functional, physiological, and histological parameters were evaluated in blood and tissues at different sampling periods (0, 24, and 72 h). There was no mortality and the induction and recovery times observed were within the established criteria for anesthetic efficacy. The anesthetic extract did not induce any side effects, such as stress or metabolic damage, indicating that this extract is a viable option for supporting fish welfare during deleterious events. This study provides information to support that the anesthetic extract tested, derived from H. akashiwo, is a promising candidate drug for operations requiring sedation (e.g., Salmonid transport).
Collapse
Affiliation(s)
- Ana Teresa Gonçalves
- Interdisciplinary Center for Aquaculture Research, O’Higgins 1695, Concepción 4030000, Chile
- GreenCoLab—Associação Oceano Verde, Campus de Gambelas, Universidade do Algarve, 8005-139 Faro, Portugal
| | - Alejandra Llanos-Rivera
- Laboratorio de Biotoxinas de la Universidad de Concepción (LBTx-UdeC), Department of Oceanography, Faculty of Natural and Oceanographic Sciences, Universidad de Concepción, Barrio Universitario s/n, Concepción 4030000, Chile
| | - Miguel Ruano
- Fishsource Units and Science Division M&E, Sustainable Fisheries Partnership, Honolulu, HI 96816, USA
| | - Veronica Avello
- Laboratorio de Biotoxinas de la Universidad de Concepción (LBTx-UdeC), Department of Oceanography, Faculty of Natural and Oceanographic Sciences, Universidad de Concepción, Barrio Universitario s/n, Concepción 4030000, Chile
| | - Juan José Gallardo-Rodriguez
- Departamento de Ingeniería Química, Escuela Superior de Ingeniería, Universidad de Almería, Carretera Sacramento, Calle San Urbano s/n, La Cañada, 04120 Almería, Spain
| | - Allisson Astuya-Villalón
- Laboratorio de Biotoxinas de la Universidad de Concepción (LBTx-UdeC), Department of Oceanography, Faculty of Natural and Oceanographic Sciences, Universidad de Concepción, Barrio Universitario s/n, Concepción 4030000, Chile
- Centro de Investigación Oceanográfica COPAS COASTAL, Universidad de Concepción, Concepción 4030000, Chile
| |
Collapse
|
7
|
Un Nissa N, Jan M, Tantray JA, Dar NA, Jan A, Ahmad F, Paray BA, Gulnaz A. Parasitic anomalies observed in snow trout due to anthropogenic stress in water bodies. Saudi J Biol Sci 2022; 29:2921-2925. [PMID: 35531143 PMCID: PMC9073024 DOI: 10.1016/j.sjbs.2022.01.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 01/07/2022] [Accepted: 01/10/2022] [Indexed: 12/05/2022] Open
Abstract
There is interrelationship of the environmental conditions and fish health. Decrease or increase of pollution in aquatic ecosystem have direct impact on presence or absence of parasites. Fish living under optimum environmental, well-nourished conditions are more resistant to diseases than fish weakened by malnutrition caused by parasite infestation or due to deterioration of environmental conditions because ofpollution. Fish encounters common parasites in wild and in culture systems. Parasites attach to the host through suckers and hooks and make their way inside the host through different means, which include skin, through mouth along with food, by means of gills. The hosts were collected during Jan 2019 to Jan 2020 from river Veshaw. During this study it was observed that presence of parasites causes some changes in fish which can serve as indicators of deterioration in aquatic habitat. Clinical signs were noticed in fish hosts collected from sites which received waste due to anthropogenic activities. Parasitic anomalies in the host collected from polluted site was observed to include body deformaties, gastric distention, lesions in gut, increased mucus production, damage in gill filaments etc.
Collapse
Affiliation(s)
- Nighat Un Nissa
- Department of Zoology, University of Kashmir, Srinagar 190006, India
| | - Masarat Jan
- Centre of Research for Development, University of Kashmir, Srinagar 190006, India
| | | | - Nazir Ahmad Dar
- Department of Biochemistry, University of Kashmir, Srinagar 190006, India
| | - Arizo Jan
- Faculty of Fisheries, Rangil, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, India
| | - Fayaz Ahmad
- Department of Zoology, University of Kashmir, Srinagar 190006, India
| | - Bilal Ahamad Paray
- Department of Zoology, College of Science, King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia
| | - Aneela Gulnaz
- College of Pharmacy, Woosuk University, Wanju-gun 55338, Republic of Korea
| |
Collapse
|
8
|
Michael K, Kreiss CM, Hu MY, Koschnick N, Bickmeyer U, Dupont S, Pörtner HO, Lucassen M. Adjustments of molecular key components of branchial ion and pH regulation in Atlantic cod (Gadus morhua) in response to ocean acidification and warming. Comp Biochem Physiol B Biochem Mol Biol 2016; 193:33-46. [DOI: 10.1016/j.cbpb.2015.12.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Revised: 12/08/2015] [Accepted: 12/08/2015] [Indexed: 10/22/2022]
|
9
|
Evaluation of potential candidate genes involved in salinity tolerance in striped catfish (Pangasianodon hypophthalmus) using an RNA-Seq approach. Mar Genomics 2015; 25:75-88. [PMID: 26653845 DOI: 10.1016/j.margen.2015.11.010] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Revised: 11/21/2015] [Accepted: 11/21/2015] [Indexed: 12/19/2022]
Abstract
Increasing salinity levels in freshwater and coastal environments caused by sea level rise linked to climate change is now recognized to be a major factor that can impact fish growth negatively, especially for freshwater teleost species. Striped catfish (Pangasianodon hypophthalmus) is an important freshwater teleost that is now widely farmed across the Mekong River Delta in Vietnam. Understanding the basis for tolerance and adaptation to raised environmental salinity conditions can assist the regional culture industry to mitigate predicted impacts of climate change across this region. Attempt of next generation sequencing using the ion proton platform results in more than 174 million raw reads from three tissue libraries (gill, kidney and intestine). Reads were filtered and de novo assembled using a variety of assemblers and then clustered together to generate a combined reference transcriptome. Downstream analysis resulted in a final reference transcriptome that contained 60,585 transcripts with an N50 of 683 bp. This resource was further annotated using a variety of bioinformatics databases, followed by differential gene expression analysis that resulted in 3062 transcripts that were differentially expressed in catfish samples raised under two experimental conditions (0 and 15 ppt). A number of transcripts with a potential role in salinity tolerance were then classified into six different functional gene categories based on their gene ontology assignments. These included; energy metabolism, ion transportation, detoxification, signal transduction, structural organization and detoxification. Finally, we combined the data on functional salinity tolerance genes into a hypothetical schematic model that attempted to describe potential relationships and interactions among target genes to explain the molecular pathways that control adaptive salinity responses in P. hypophthalmus. Our results indicate that P. hypophthalmus exhibit predictable plastic regulatory responses to elevated salinity by means of characteristic gene expression patterns, providing numerous candidate genes for future investigations.
Collapse
|
10
|
Dezfuli BS, Giari L, Simoni E, Menegatti R, Shinn AP, Manera M. Gill histopathology of cultured European sea bass, Dicentrarchus labrax (L.), infected with Diplectanum aequans (Wagener 1857) Diesing 1958 (Diplectanidae: Monogenea). Parasitol Res 2006; 100:707-13. [PMID: 17061113 DOI: 10.1007/s00436-006-0343-4] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2006] [Accepted: 09/13/2006] [Indexed: 10/24/2022]
Abstract
The mortality of juvenile European sea bass, Dicentrarchus labrax (L.), in the spring of the last 5 years in the northern coast of the Adriatic Sea has been attributed to heavy infections of the gill monogenean Diplectanum aequans (Wagener 1857) Diesing 1858. The histopathological examination of 38 sets of gills from hosts measuring 16.46 +/- 0.26 cm in total length (mean+/-S.E.) and weighing 45.98 +/- 2.37 g (mean+/-S.E.) were conducted using light and transmission electron microscopy. Twenty-eight (73.6%) D. labrax specimens were infected (34.61 +/- 4.42, mean intensity+/-S.E.; 5-100, range) with the majority of D. aequans attaching to the median and apical portions of the primary gill filaments. The sites of attachment were marked by the common presence of haemorrhages and a white mucoid exudate. In histological sections, the opisthaptors of the parasites were observed to penetrate deeply, lying in close proximity to the basal membrane of primary lamella where they induced a hyperplastic response. Disruption and fusion of the secondary lamellae were common in all infected specimens with several individuals also exhibiting a marked erosion and inflammation of the epithelium of the primary and secondary lamellae. In infected fish, cellular changes in the epithelium underlying the bodies of worms were noted typified by an elevation in the number of mucous and rodlet cells and a reduction in the number of chloride cells.
Collapse
Affiliation(s)
- Bahram S Dezfuli
- Department of Biology, University of Ferrara, Via Borsari, 46-44100, Ferrara, Italy.
| | | | | | | | | | | |
Collapse
|
11
|
Shmukler BE, Kurschat CE, Ackermann GE, Jiang L, Zhou Y, Barut B, Stuart-Tilley AK, Zhao J, Zon LI, Drummond IA, Vandorpe DH, Paw BH, Alper SL. Zebrafish slc4a2/ae2 anion exchanger: cDNA cloning, mapping, functional characterization, and localization. Am J Physiol Renal Physiol 2005; 289:F835-49. [PMID: 15914778 DOI: 10.1152/ajprenal.00122.2005] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Although the zebrafish has been used increasingly for the study of pronephric kidney development, studies of renal ion transporters and channels of the zebrafish remain few. We report the cDNA cloning and characterization of the AE2 anion exchanger ortholog from zebrafish kidney, slc4a2/ae2. The ae2 gene in linkage group 2 encodes a polypeptide of 1,228 aa exhibiting 64% aa identity with mouse AE2a. The exon-intron boundaries of the zebrafish ae2 gene are nearly identical to those of the rodent and human genes. Whole-mount in situ hybridization detects ae2 mRNA in prospective midbrain as early as the five-somite stage, then later in the pronephric primordia and the forming pronephric duct, where it persists through 72 h postfertilization (hpf). Zebrafish Ae2 expressed in Xenopus laevis oocytes mediates Na(+)-independent, electroneutral (36)Cl(-)/Cl(-) exchange moderately sensitive to inhibition by DIDS, is inhibited by acidic intracellular pH and by acidic extracellular pH, but activated by (acidifying) ammonium and by hypertonicity. Zebrafish Ae2 also mediates Cl(-)/HCO(3)(-) exchange in X. laevis oocytes and accumulates in or near the plasma membrane in transfected HEK-293 cells. In 24-48 hpf zebrafish embryos, the predominant but not exclusive localization of Ae2 polypeptide is the apical membrane of pronephric duct epithelial cells. Thus Ae2 resembles its mammalian orthologs in function, mechanism, and acute regulation but differs in its preferentially apical expression in kidney. These results will inform tests of the role of Ae2 in zebrafish kidney development and function.
Collapse
Affiliation(s)
- Boris E Shmukler
- Molecular Medicine and Renal Units, Beth Israel Deaconess Med. Ctr. E/RW763, 330 Brookline Ave., Boston, MA 02215, USA
| | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|