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Alizamir A, Gholami A, Bahrami N, Ostadhassan M. Refractive Index of Hemoglobin Analysis: A Comparison of Alternating Conditional Expectations and Computational Intelligence Models. ACS OMEGA 2022; 7:33769-33782. [PMID: 36188321 PMCID: PMC9520688 DOI: 10.1021/acsomega.2c00746] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Accepted: 08/30/2022] [Indexed: 06/16/2023]
Abstract
Hemoglobin is one of the most important blood elements, and its optical properties will determine all other optical properties of human blood. Since the refractive index (RI) of hemoglobin plays a vital role as a non-invasive indicator of some illnesses, accurate calculation of it would be of great importance. Moreover, measurement of the RI of hemoglobin in the laboratory is time-consuming and expensive; thus, developing a smart approach to estimate this parameter is necessary. In this research, four viable strategies were used to make a quantitative correlation between the RI of hemoglobin and its influencing parameters including the concentration, wavelength, and temperature. First, alternating conditional expectations (ACE), a statistical approach, was employed to generate a correlation to predict the RI of hemoglobin. Then, three different optimized intelligent techniques-optimized neural network (ONN), optimized fuzzy inference system (OFIS), and optimized support vector regression (OSVR)-were used to model the RI. A bat-inspired (BA) algorithm was embedded in the formulation of intelligent models to obtain the optimal values of weights and biases of an artificial neural network, membership functions of the fuzzy inference system, and free parameters of support vector regression. The coefficient of determination, root-mean-square error, average absolute relative error, and symmetric mean absolute percentage error for each of the ACE, ONN, OFIS, and OSVR were found as the measure of each model's accuracy. Results showed that ACE and optimized models (ONN, OFIS, and OSVR) have promising results in the estimation of hemoglobin's RI. Collectively, ACE outperformed ONN, OFIS, and OSVR, while sensitivity analysis indicated that the concentration, wavelength, and, lastly, temperature would have the highest impact on the RI.
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Affiliation(s)
- Aida Alizamir
- Department
of Pathology, School of Medicine, Hamadan
University of Medical Science, Hamadan 6517838738, Iran
| | - Amin Gholami
- Reservoir
Division, Iranian Offshore Oil Company, Tehran 1966653943, Iran
| | - Nader Bahrami
- Financial
Transaction Department, Carsome Company, Petaling Jaya, Selangor 47800, Malaysia
| | - Mehdi Ostadhassan
- Department
of Geology, Ferdowsi University of Mashhad, Mashhad 9177948974, Iran
- Institute
of Geosciences, Marine and Land Geomechanics and Geotectonics, Christian-Albrechts-Universität, Kiel 24118, Germany
- Key
Laboratory of Continental Shale Hydrocarbon Accumulation and Efficient
Development, Ministry of Education, Northeast
Petroleum University, Daqing 163318, China
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Feng C, Zhao N, Yin G, Gan T, Yang R, Chen M, Duan J, Hu Y. A new method for detecting mixed bacteria based on multi-wavelength transmission spectroscopy technology. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 270:120852. [PMID: 35026531 DOI: 10.1016/j.saa.2021.120852] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 12/22/2021] [Accepted: 12/30/2021] [Indexed: 06/14/2023]
Abstract
Previously, we successfully realized the identification of a single species of bacteria based on the multi-wavelength transmission spectrum of bacteria. The current research is focused on realizing the spectral analysis of mixed bacteria. Principal component analysis-Monte Carlo (PCA-MC) model was developed for the implementation of spectral separation of mixed bacteria by obtaining the ratio of components. And, the separated spectrum was regarded as the model input of the neural network concentration inversion model to obtain the concentration of each bacteria in the mix. Mean relative errors in component analysis of mixing S.aureus with K.pneumoniae, mixing S.aureus with S.typhimurium twice, mixing K.pneumoniae with S.typhimurium are 3%, 2%, 3.9% and 6.1%, respectively. The coefficient of determination (R2) of validation set and test set are 0.9947 and 0.9954 in concentration inversion model. The results show that this method can quickly and accurately determine the component ratio and concentration information in the mixed bacteria. A new method was proposed to separate the spectrum of mixed bacteria effectively and measure its concentration quickly, which makes a big step forward in the detection and online monitoring of waterborne microbial contamination based on multi-wavelength transmission spectroscopy.
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Affiliation(s)
- Chun Feng
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; University of Science and Technology of China, Hefei 230026, China
| | - Nanjing Zhao
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; Key Laboratory of Optical Monitoring Technology for Environment, Anhui Province, Hefei 230031, China.
| | - Gaofang Yin
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; Key Laboratory of Optical Monitoring Technology for Environment, Anhui Province, Hefei 230031, China.
| | - Tingting Gan
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; Key Laboratory of Optical Monitoring Technology for Environment, Anhui Province, Hefei 230031, China
| | - Ruifang Yang
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; Key Laboratory of Optical Monitoring Technology for Environment, Anhui Province, Hefei 230031, China
| | - Min Chen
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; University of Science and Technology of China, Hefei 230026, China
| | - Jingbo Duan
- Key Laboratory of Environmental Optics and Technology, Anhui Institute of Optics and Fine, Mechanics, Chinese Academy of Sciences, Hefei 230031, China; Key Laboratory of Optical Monitoring Technology for Environment, Anhui Province, Hefei 230031, China
| | - Yuxia Hu
- Anhui Jianzhu University, Anhui Province, Hefei 230031, China
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Paul R, Zhou Y, Nikfar M, Razizadeh M, Liu Y. Quantitative absorption imaging of red blood cells to determine physical and mechanical properties. RSC Adv 2020; 10:38923-38936. [PMID: 33240491 PMCID: PMC7685304 DOI: 10.1039/d0ra05421f] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Accepted: 09/28/2020] [Indexed: 12/18/2022] Open
Abstract
Red blood cells or erythrocytes, constituting 40 to 45 percent of the total volume of human blood are vesicles filled with hemoglobin with a fluid-like lipid bilayer membrane connected to a 2D spectrin network. The shape, volume, hemoglobin mass, and membrane stiffness of RBCs are important characteristics that influence their ability to circulate through the body and transport oxygen to tissues. In this study, we show that a simple two-LED set up in conjunction with standard microscope imaging can accurately determine the physical and mechanical properties of single RBCs. The Beer-Lambert law and undulatory motion dynamics of the membrane have been used to measure the total volume, hemoglobin mass, membrane tension coefficient, and bending modulus of RBCs. We also show that this method is sensitive enough to distinguish between the mechanical properties of RBCs during morphological changes from a typical discocyte to echinocytes and spherocytes. Measured values of the tension coefficient and bending modulus are 1.27 × 10-6 J m-2 and 7.09 × 10-2 J for discocytes, 4.80 × 10-6 J m-2 and 7.70 × 10-20 J for echinocytes, and 9.85 × 10-6 J m-2 and 9.69 × 10-20 J for spherocytes, respectively. This quantitative light absorption imaging reduces the complexity related to the quantitative imaging of the biophysical and mechanical properties of a single RBC that may lead to enhanced yet simplified point of care devices for analyzing blood cells.
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Affiliation(s)
- Ratul Paul
- Department of Mechanical Engineering and Mechanics, Lehigh UniversityBethlehemPennsylvania 18015USA
| | - Yuyuan Zhou
- Department of Bioengineering, Lehigh UniversityBethlehemPennsylvania 18015USA
| | - Mehdi Nikfar
- Department of Mechanical Engineering and Mechanics, Lehigh UniversityBethlehemPennsylvania 18015USA
| | - Meghdad Razizadeh
- Department of Mechanical Engineering and Mechanics, Lehigh UniversityBethlehemPennsylvania 18015USA
| | - Yaling Liu
- Department of Mechanical Engineering and Mechanics, Lehigh UniversityBethlehemPennsylvania 18015USA
- Department of Bioengineering, Lehigh UniversityBethlehemPennsylvania 18015USA
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Alade IO, Bagudu A, Oyehan TA, Rahman MAA, Saleh TA, Olatunji SO. Estimating the refractive index of oxygenated and deoxygenated hemoglobin using genetic algorithm - support vector regression model. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 163:135-142. [PMID: 30119848 DOI: 10.1016/j.cmpb.2018.05.029] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Revised: 04/30/2018] [Accepted: 05/14/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND OBJECTIVES The refractive index of hemoglobin plays important role in hematology due to its strong correlation with the pathophysiology of different diseases. Measurement of the real part of the refractive index remains a challenge due to strong absorption of the hemoglobin especially at relevant high physiological concentrations. So far, only a few studies on direct measurement of refractive index have been reported and there are no firm agreements on the reported values of refractive index of hemoglobin due to measurement artifacts. In addition, it is time consuming, laborious and expensive to perform several experiments to obtain the refractive index of hemoglobin. In this work, we proposed a very rapid and accurate computational intelligent approach using Genetic Algorithm/Support Vector Regression models to estimate the real part of the refractive index for oxygenated and deoxygenated hemoglobin samples. METHODS These models utilized experimental data of wavelengths and hemoglobin concentrations in building highly accurate Genetic Algorithm/Support Vector Regression model (GA-SVR). RESULTS The developed methodology showed high accuracy as indicated by the low root mean square error values of 4.65 × 10-4 and 4.62 × 10-4 for oxygenated and deoxygenated hemoglobin, respectively. In addition, the models exhibited 99.85 and 99.84% correlation coefficients (r) for the oxygenated and deoxygenated hemoglobin, thus, validating the strong agreement between the predicted and the experimental results CONCLUSIONS: Due to the accuracy and relative simplicity of the proposed models, we envisage that these models would serve as important references for future studies on optical properties of blood.
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Affiliation(s)
- Ibrahim Olanrewaju Alade
- Department of Physics, Faculty of Science, Universiti Putra Malaysia, UPM, 43400 Serdang, Malaysia; College of Industrial Management, King Fahd University of Petroleum & Minerals (KFUPM), Dhahran 31261, Saudi Arabia
| | - Aliyu Bagudu
- College of Computer Science and Information Technology, King Fahd University of Petroleum & Minerals (KFUPM), Dhahran 31261, Saudi Arabia
| | - Tajudeen A Oyehan
- Geosciences Department, College of Petroleum & Geosciences, King Fahd University of Petroleum & Minerals (KFUPM), Dhahran 31261, Saudi Arabia
| | | | - Tawfik A Saleh
- Chemistry Department, King Fahd University of Petroleum & Minerals (KFUPM), Dhahran 31261, Saudi Arabia.
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Oyehan TA, Alade IO, Bagudu A, Sulaiman KO, Olatunji SO, Saleh TA. Predicting of the refractive index of haemoglobin using the Hybrid GA-SVR approach. Comput Biol Med 2018; 98:85-92. [DOI: 10.1016/j.compbiomed.2018.04.024] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Revised: 04/11/2018] [Accepted: 04/27/2018] [Indexed: 11/16/2022]
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